RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 KRT2P35908 639 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 TXKP42681 527 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 PSMD6Q15008 389 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 KRT79Q5XKE5 535 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 NELFCDQ8IXH7 590 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 FNBP4Q8N3X1 1017 aaPredicted RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 JAKMIP2Q96AA8 810 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 CRNKL1Q9BZJ0 848 aaKnown RBP9.75□□□□□ -0.85
RTN3-202ENST00000339997 RAD50Q92878 1312 aa9.75□□□□□ -0.85
RTN3-202ENST00000339997 ZFYP08048 801 aaPredicted RBP9.74□□□□□ -0.85
RTN3-202ENST00000339997 MICAL1Q8TDZ2 1067 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 ZNF652Q9Y2D9 606 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 ABCA8O94911 1581 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 HARSP12081 509 aaKnown RBP9.74□□□□□ -0.85
RTN3-202ENST00000339997 KRT40Q6A162 431 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 TYW1BQ6NUM6 668 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 BRAPQ7Z569 592 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 MTMR6Q9Y217 621 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 RNF123Q5XPI4 1314 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 ARHGAP6O43182 974 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 NSRP1Q9H0G5 558 aaKnown RBP9.74□□□□□ -0.85
RTN3-202ENST00000339997 SAP30BPQ9UHR5 308 aaKnown RBP9.74□□□□□ -0.85
RTN3-202ENST00000339997 SERTAD1Q9UHV2 236 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 A0A0D9SFI3 127 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 ZBTB22O15209 634 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 CHMP2AO43633 222 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 USP19O94966 1318 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 BAG3O95817 575 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 MAGEA1P43355 309 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 PSMC4P43686 418 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 IFI16Q16666 785 aaKnown RBP9.74□□□□□ -0.85
RTN3-202ENST00000339997 LRRC8AQ8IWT6 810 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 ARFGAP2Q8N6H7 521 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 BCAS4Q8TDM0 211 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 VPS54Q9P1Q0 977 aa9.74□□□□□ -0.85
RTN3-202ENST00000339997 ALDH1L1O75891 902 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 VPS41P49754 854 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 CCDC170Q8IYT3 715 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 FERMT2Q96AC1 680 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 RSRC1Q96IZ7 334 aaKnown RBP9.73□□□□□ -0.85
RTN3-202ENST00000339997 CDC5LQ99459 802 aaKnown RBP9.73□□□□□ -0.85
RTN3-202ENST00000339997 POLR3AO14802 1390 aaPredicted RBP9.73□□□□□ -0.85
RTN3-202ENST00000339997 RPSAP08865 295 aaKnown RBP9.73□□□□□ -0.85
RTN3-202ENST00000339997 ADCY1Q08828 1119 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 DAAM2Q86T65 1068 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 RDH13Q8NBN7 331 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 NIP7Q9Y221 180 aaKnown RBP eCLIP9.73□□□□□ -0.85
RTN3-202ENST00000339997 CCDC141Q6ZP82 1450 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 GPAA1O43292 621 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 CALCOCO2Q13137 446 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 CAPN12Q6ZSI9 719 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 TAB3Q8N5C8 712 aaPredicted RBP9.73□□□□□ -0.85
RTN3-202ENST00000339997 KIAA0556O60303 1618 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 SYNRGQ9UMZ2 1314 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 MAGEB6P1A0A0J9YX57 407 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 EXOC5O00471 708 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 BUB1O43683 1085 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 CCT5P48643 541 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 ETF1P62495 437 aaKnown RBP9.73□□□□□ -0.85
RTN3-202ENST00000339997 GNGT1P63211 74 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 TRIM68Q6AZZ1 485 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 TMTC2Q8N394 836 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 ANKRD42Q8N9B4 389 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 SUCLG2Q96I99 432 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 SMC6Q96SB8 1091 aa9.73□□□□□ -0.85
RTN3-202ENST00000339997 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.72□□□□□ -0.85
RTN3-202ENST00000339997 FCHSD1Q86WN1 690 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 TBC1D31Q96DN5 1066 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 CCDC77Q9BR77 488 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 CNNM2Q9H8M5 875 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 ASXL1Q8IXJ9 1541 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 MAP3K19Q56UN5 1328 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 KCNQ3O43525 872 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 PDE6BP35913 854 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 TNNC1P63316 161 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 KRT71Q3SY84 523 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 TNNI3KQ59H18 835 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 NBPF6Q5VWK0 638 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 NAA35Q5VZE5 725 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 NBPF5PQ86XG9 351 aaPredicted RBP9.72□□□□□ -0.85
RTN3-202ENST00000339997 NBPF4Q96M43 638 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 ANTXR1Q9H6X2 564 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 KIAA1468Q9P260 1216 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 FPGT-TNNI3KV9GXZ4 949 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 SPATA31E1Q6ZUB1 1445 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 ANKRD36BQ8N2N9 1353 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 UQCRFS1P1P0C7P4 283 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 PFKFB1P16118 471 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 VSIG1Q86XK7 387 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 C2CD5Q86YS7 1000 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 SMYD4Q8IYR2 804 aaPredicted RBP9.72□□□□□ -0.85
RTN3-202ENST00000339997 ARHGEF2Q92974 986 aaKnown RBP9.72□□□□□ -0.85
RTN3-202ENST00000339997 EPC1Q9H2F5 836 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 GPCPD1Q9NPB8 672 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 CLGNO14967 610 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 SPOPO43791 374 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 A1BGP04217 495 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 MAP2K2P36507 400 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 NDUFA8P51970 172 aa9.72□□□□□ -0.85
RTN3-202ENST00000339997 ZNF131P52739 623 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms