RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 STX17P56962 302 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 CTDSPL2Q05D32 466 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 MAP3K12Q12852 859 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 MFSD6Q6ZSS7 791 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 WASF1Q92558 559 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 BAG1Q99933 345 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 AGXT2Q9BYV1 514 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 GREM2Q9H772 168 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 ZNF652Q9Y2D9 606 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 GNPATO15228 680 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 CIAO1O76071 339 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 CASP7P55210 303 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 NBPF5PQ86XG9 351 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 DIS3L2Q8IYB7 885 aaKnown RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 CCDC12Q8WUD4 166 aaPredicted RBP12.05□□□□□ -0.48
COL3A1-202ENST00000317840 DPF2Q92785 391 aa12.05□□□□□ -0.48
COL3A1-202ENST00000317840 TPM1P09493 284 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 EVCP57679 992 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 ANTXR2P58335 489 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 LONRF3Q496Y0 759 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 MAGEB6Q8N7X4 407 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 TMEM232C9JQI7 657 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 TULP1O00294 542 aaPredicted RBP12.04□□□□□ -0.48
COL3A1-202ENST00000317840 USP21Q9UK80 565 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 WWC3Q9ULE0 1092 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 HPS5Q9UPZ3 1129 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 MEGF6O75095 1541 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 LOC102724428A0A0B4J2F2 783 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 MBD4O95243 580 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 SIK1P57059 783 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 RTN1Q16799 776 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 DESI2Q9BSY9 194 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 LZTFL1Q9NQ48 299 aa12.04□□□□□ -0.48
COL3A1-202ENST00000317840 ZMYM6O95789 1325 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 XBP1P17861 261 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 MCAMP43121 646 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 TBC1D10CQ8IV04 446 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 MIGA1Q8NAN2 632 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 CCDC87Q9NVE4 849 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 SALL1Q9NSC2 1324 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 JCADQ9P266 1359 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 CDC27P30260 824 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 CLCN6P51797 869 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 AXDND1Q5T1B0 1012 aaPredicted RBP12.03□□□□□ -0.48
COL3A1-202ENST00000317840 SHC4Q6S5L8 630 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 CYB5R4Q7L1T6 521 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 DHX58Q96C10 678 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 TMX4Q9H1E5 349 aaPredicted RBP12.03□□□□□ -0.48
COL3A1-202ENST00000317840 ARMT1Q9H993 441 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 ANKIB1Q9P2G1 1089 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 MORC2Q9Y6X9 1032 aaPredicted RBP12.03□□□□□ -0.48
COL3A1-202ENST00000317840 MROH7-TTC4A0A0A0MT08 1334 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 IKBKBO14920 756 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 CUTAO60888 179 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 SLC5A1P13866 664 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 RFC4P35249 363 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 PHKA1P46020 1223 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 WTAPQ15007 396 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 KRBA2Q6ZNG9 492 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 SENP2Q9HC62 589 aa12.03□□□□□ -0.48
COL3A1-202ENST00000317840 UBE2Q2LH0YL09 131 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 FOXN1O15353 648 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 ARHGAP6O43182 974 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 CRKLP46109 303 aaKnown RBP12.02□□□□□ -0.48
COL3A1-202ENST00000317840 FILIP1LQ4L180 1135 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 GRAMD1CQ8IYS0 662 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 TMEM87BQ96K49 555 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 EPC1Q9H2F5 836 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 CABP5Q9NP86 173 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 SEC31BQ9NQW1 1179 aa12.02□□□□□ -0.48
COL3A1-202ENST00000317840 PDE6AP16499 860 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 GPS2Q13227 327 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 TERF2Q15554 542 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 LRP10Q7Z4F1 713 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 LRRN4CLQ8ND94 238 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 SERTAD1Q9UHV2 236 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 hCG_1642624A0A1W2PR95 340 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 TUBB4AP04350 444 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 POSTNQ15063 836 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 SETDB2Q96T68 719 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 PPP2R2CQ9Y2T4 447 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 SLC4A4Q9Y6R1 1079 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 LTN1O94822 1766 aa12.02□□□□□ -0.49
COL3A1-202ENST00000317840 SOS2Q07890 1332 aaPredicted RBP12.02□□□□□ -0.49
COL3A1-202ENST00000317840 SEC31AO94979 1220 aaKnown RBP12.01□□□□□ -0.49
COL3A1-202ENST00000317840 ADD2P35612 726 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 NOSTRINQ8IVI9 506 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 AK7Q96M32 723 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 SRRTQ9BXP5 876 aaKnown RBP12.01□□□□□ -0.49
COL3A1-202ENST00000317840 OVOS2A0A0G2JMS6 1433 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 NFAT5O94916 1531 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 CCDC196A0A1B0GTZ2 297 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 KIF4BQ2VIQ3 1234 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 CCDC152Q4G0S7 254 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 GIGYF2Q6Y7W6 1299 aaKnown RBP12.01□□□□□ -0.49
COL3A1-202ENST00000317840 BPIFA3Q9BQP9 254 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 SH2B2O14492 632 aaPredicted RBP12.01□□□□□ -0.49
COL3A1-202ENST00000317840 NCAPHQ15003 741 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.01□□□□□ -0.49
COL3A1-202ENST00000317840 PIH1D3Q9NQM4 214 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms