RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 GOLPH3LQ9H4A5 285 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 RIMBP2O15034 1052 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 ADCY5O95622 1261 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 TYRO3Q06418 890 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 ANO6Q4KMQ2 910 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 KRT40Q6A162 431 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 NSUN4Q96CB9 384 aaKnown RBP13.36□□□□□ -0.27
CUX1-202ENST00000292538 PPP1R9BQ96SB3 815 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 MCM9Q9NXL9 1143 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 ELP1O95163 1332 aa13.36□□□□□ -0.27
CUX1-202ENST00000292538 UTRNP46939 3433 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 MYH3P11055 1940 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 CDKL5O76039 1030 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 GYS1P13807 737 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 ALX1Q15699 326 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 RTN1Q16799 776 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 MSL1Q68DK7 614 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 ESR2Q92731 530 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 SDF4Q9BRK5 362 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 RIOK1Q9BRS2 568 aaKnown RBP13.35□□□□□ -0.27
CUX1-202ENST00000292538 RNF41Q9H4P4 317 aaPredicted RBP13.35□□□□□ -0.27
CUX1-202ENST00000292538 ZNF219Q9P2Y4 722 aaPredicted RBP13.35□□□□□ -0.27
CUX1-202ENST00000292538 COL1A1P02452 1464 aaPredicted RBP13.35□□□□□ -0.27
CUX1-202ENST00000292538 USP5P45974 858 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 EVCP57679 992 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 ST5P78524 1137 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 GRAPQ13588 217 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 GRIK5Q16478 980 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 GRAPLQ8TC17 118 aaPredicted RBP13.35□□□□□ -0.27
CUX1-202ENST00000292538 DNAJC25Q9H1X3 360 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 PCDHA7Q9UN72 937 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 TNKSO95271 1327 aa13.35□□□□□ -0.27
CUX1-202ENST00000292538 MYO5AQ9Y4I1 1855 aaKnown RBP13.34□□□□□ -0.27
CUX1-202ENST00000292538 AKAP11Q9UKA4 1901 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 F8W031 263 aaPredicted RBP13.34□□□□□ -0.27
CUX1-202ENST00000292538 KINO60870 393 aaKnown RBP13.34□□□□□ -0.27
CUX1-202ENST00000292538 ISM2Q6H9L7 571 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 OLFM4Q6UX06 510 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 STAG1Q8WVM7 1258 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 SAP30BPQ9UHR5 308 aaKnown RBP13.34□□□□□ -0.27
CUX1-202ENST00000292538 PNPLA7Q6ZV29 1317 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 LDHBP07195 334 aaKnown RBP13.34□□□□□ -0.27
CUX1-202ENST00000292538 USP17L8P0C7I0 530 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 GPSM2P81274 684 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 MYSM1Q5VVJ2 828 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 CTR9Q6PD62 1173 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 ANKRD36CQ5JPF3 1778 aa13.34□□□□□ -0.27
CUX1-202ENST00000292538 SPECC1Q5M775 1068 aa13.33□□□□□ -0.27
CUX1-202ENST00000292538 IFIT1BQ5T764 474 aaKnown RBP13.33□□□□□ -0.27
CUX1-202ENST00000292538 CRNKL1Q9BZJ0 848 aaKnown RBP13.33□□□□□ -0.27
CUX1-202ENST00000292538 FAM217BQ9NTX9 383 aaPredicted RBP13.33□□□□□ -0.27
CUX1-202ENST00000292538 DDX19AQ9NUU7 478 aaKnown RBP13.33□□□□□ -0.27
CUX1-202ENST00000292538 PODXL2Q9NZ53 605 aa13.33□□□□□ -0.27
CUX1-202ENST00000292538 AKAP17AQ02040 695 aaKnown RBP13.33□□□□□ -0.28
CUX1-202ENST00000292538 KIF23Q02241 960 aaPredicted RBP13.33□□□□□ -0.28
CUX1-202ENST00000292538 TRIM22Q8IYM9 498 aa13.33□□□□□ -0.28
CUX1-202ENST00000292538 ZNF654Q8IZM8 581 aa13.33□□□□□ -0.28
CUX1-202ENST00000292538 NAP1L5Q96NT1 182 aaPredicted RBP13.33□□□□□ -0.28
CUX1-202ENST00000292538 RCOR1Q9UKL0 485 aa13.33□□□□□ -0.28
CUX1-202ENST00000292538 BIN1O00499 593 aa13.33□□□□□ -0.28
CUX1-202ENST00000292538 APBA3O96018 575 aa13.33□□□□□ -0.28
CUX1-202ENST00000292538 DYNLL2Q96FJ2 89 aa13.33□□□□□ -0.28
CUX1-202ENST00000292538 CLSTN2Q9H4D0 955 aa13.33□□□□□ -0.28
CUX1-202ENST00000292538 ATRNO75882 1429 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 TSPY2A6NKD2 308 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 BTBD18B2RXH4 712 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 SPTLC2O15270 562 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 TXNRD1Q16881 649 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 IQCA1Q86XH1 822 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 DRC7Q8IY82 874 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 FBXL16Q8N461 479 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 FANCBQ8NB91 859 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 TGFBRAP1Q8WUH2 860 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 MRVI1Q9Y6F6 885 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 WNK3Q9BYP7 1800 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 NDUFA8P51970 172 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 ZSCAN30Q86W11 494 aa13.32□□□□□ -0.28
CUX1-202ENST00000292538 DCP1AQ9NPI6 582 aaPredicted RBP13.32□□□□□ -0.28
CUX1-202ENST00000292538 SPEF2Q9C093 1822 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 LIFRP42702 1097 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 MAPKAPK5Q8IW41 473 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 HOMEZQ8IX15 550 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 ENAHQ8N8S7 591 aaPredicted RBP13.31□□□□□ -0.28
CUX1-202ENST00000292538 LINC00301Q8NCQ3 95 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 CLIC6Q96NY7 704 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 ZSCAN10Q96SZ4 725 aaPredicted RBP13.31□□□□□ -0.28
CUX1-202ENST00000292538 NWD2Q9ULI1 1742 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 NR5A1Q13285 461 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 ZRSR1Q15695 479 aaKnown RBP13.31□□□□□ -0.28
CUX1-202ENST00000292538 NTRK3Q16288 839 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 ANO1Q5XXA6 986 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 SGMS1Q86VZ5 419 aa13.31□□□□□ -0.28
CUX1-202ENST00000292538 SH3RF3Q8TEJ3 882 aaPredicted RBP13.31□□□□□ -0.28
CUX1-202ENST00000292538 V9GY48 417 aaPredicted RBP13.31□□□□□ -0.28
CUX1-202ENST00000292538 ZNF165P49910 485 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 DDR1Q08345 913 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 SAFBQ15424 915 aaKnown RBP eCLIP13.3□□□□□ -0.28
CUX1-202ENST00000292538 ZNF804AQ7Z570 1209 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 CATIPQ7Z7H3 387 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 PROM2Q8N271 834 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms