RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 ANKRD23Q86SG2 305 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 NBPF11Q86T75 865 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 ZNF333Q96JL9 665 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 IDI2Q9BXS1 227 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 PICK1Q9NRD5 415 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 CPA4Q9UI42 421 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 KCNH4Q9UQ05 1017 aa15.76■□□□□ 0.11
CD44-203ENST00000278386 MKI67P46013 3256 aaKnown RBP15.76■□□□□ 0.11
CD44-203ENST00000278386 PDHXO00330 501 aa15.75■□□□□ 0.11
CD44-203ENST00000278386 ZBTB22O15209 634 aa15.75■□□□□ 0.11
CD44-203ENST00000278386 MYCP01106 439 aaPredicted RBP15.75■□□□□ 0.11
CD44-203ENST00000278386 G3BP1Q13283 466 aaKnown RBP eCLIP15.75■□□□□ 0.11
CD44-203ENST00000278386 FOCADQ5VW36 1801 aa15.74■□□□□ 0.11
CD44-203ENST00000278386 PNMA6EA0A0J9YXQ4 647 aa15.74■□□□□ 0.11
CD44-203ENST00000278386 MECOMQ03112 1051 aa15.74■□□□□ 0.11
CD44-203ENST00000278386 SLC4A8Q2Y0W8 1093 aa15.74■□□□□ 0.11
CD44-203ENST00000278386 PI16Q6UXB8 463 aa15.74■□□□□ 0.11
CD44-203ENST00000278386 SCYL3Q8IZE3 742 aa15.74■□□□□ 0.11
CD44-203ENST00000278386 PARK7Q99497 189 aaKnown RBP15.74■□□□□ 0.11
CD44-203ENST00000278386 DDX4Q9NQI0 724 aaKnown RBP15.74■□□□□ 0.11
CD44-203ENST00000278386 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.74■□□□□ 0.11
CD44-203ENST00000278386 LOC285556D6RIA3 1793 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 DDTLA6NHG4 134 aaPredicted RBP15.73■□□□□ 0.11
CD44-203ENST00000278386 EN2P19622 333 aaPredicted RBP15.73■□□□□ 0.11
CD44-203ENST00000278386 GSTO1P78417 241 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 OS9Q13438 667 aaPredicted RBP15.73■□□□□ 0.11
CD44-203ENST00000278386 ZKSCAN2Q63HK3 967 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 GADL1Q6ZQY3 521 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 SH3BP5LQ7L8J4 393 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 TMEM57Q8N5G2 664 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 SPATA5Q8NB90 893 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 SH3TC2Q8TF17 1288 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 RAI14Q9P0K7 980 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 HMG20BQ9P0W2 317 aa15.73■□□□□ 0.11
CD44-203ENST00000278386 GNRH1P01148 92 aa15.72■□□□□ 0.11
CD44-203ENST00000278386 ARID4AP29374 1257 aaPredicted RBP15.72■□□□□ 0.11
CD44-203ENST00000278386 PSMC4P43686 418 aa15.72■□□□□ 0.11
CD44-203ENST00000278386 HNRNPUQ00839 825 aaKnown RBP eCLIP15.72■□□□□ 0.11
CD44-203ENST00000278386 C17orf99Q6UX52 265 aa15.72■□□□□ 0.11
CD44-203ENST00000278386 FTSJ3Q8IY81 847 aaKnown RBP15.72■□□□□ 0.11
CD44-203ENST00000278386 FAM163AQ96GL9 167 aaPredicted RBP15.72■□□□□ 0.11
CD44-203ENST00000278386 ZHX2Q9Y6X8 837 aa15.72■□□□□ 0.11
CD44-203ENST00000278386 SIPA1L1O43166 1804 aa15.72■□□□□ 0.11
CD44-203ENST00000278386 ADGRA2Q96PE1 1338 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 PHF20L1A8MW92 1017 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 CXCL11O14625 94 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 FMNL1O95466 1100 aaPredicted RBP15.71■□□□□ 0.11
CD44-203ENST00000278386 LDHCP07864 332 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 MCAMP43121 646 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 PRMT2P55345 433 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 MOGSQ13724 837 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 TBC1D9Q6ZT07 1266 aa15.71■□□□□ 0.11
CD44-203ENST00000278386 GPR75-ASB3A0A0A6YYF3 556 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 A0A0G2JLL6 359 aaPredicted RBP15.7■□□□□ 0.1
CD44-203ENST00000278386 UQCRFS1P1P0C7P4 283 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 SLURP2P0DP57 97 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 CYP2C8P10632 490 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 PTPRAP18433 802 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 RHBDL3P58872 404 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 TTC39AQ5SRH9 613 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 FASTKD5Q7L8L6 764 aaKnown RBP15.7■□□□□ 0.1
CD44-203ENST00000278386 PRRT2Q7Z6L0 340 aaPredicted RBP15.7■□□□□ 0.1
CD44-203ENST00000278386 RAET1EQ8TD07 263 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 ZNF384Q8TF68 577 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 NSUN4Q96CB9 384 aaKnown RBP15.7■□□□□ 0.1
CD44-203ENST00000278386 TRIM47Q96LD4 638 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 NOL10Q9BSC4 688 aaKnown RBP15.7■□□□□ 0.1
CD44-203ENST00000278386 C1orf115Q9H7X2 142 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 LRP2BPQ9P2M1 347 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.7■□□□□ 0.1
CD44-203ENST00000278386 SRRDQ9UH36 339 aa15.7■□□□□ 0.1
CD44-203ENST00000278386 COL2A1P02458 1487 aaPredicted RBP15.7■□□□□ 0.1
CD44-203ENST00000278386 MYPNQ86TC9 1320 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 TRIM75PA6NK02 468 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 FAM196BA6NMK8 535 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 CTNND1O60716 968 aaKnown RBP15.69■□□□□ 0.1
CD44-203ENST00000278386 OSBPP22059 807 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 HOXD10P28358 340 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 CTGFP29279 349 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 GPAT2Q6NUI2 795 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 ITPRIPQ8IWB1 547 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 TEX11Q8IYF3 940 aa15.69■□□□□ 0.1
CD44-203ENST00000278386 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.69■□□□□ 0.1
CD44-203ENST00000278386 MYH1P12882 1939 aa15.68■□□□□ 0.1
CD44-203ENST00000278386 TNNI3KQ59H18 835 aa15.68■□□□□ 0.1
CD44-203ENST00000278386 CCDC84Q86UT8 332 aaPredicted RBP15.68■□□□□ 0.1
CD44-203ENST00000278386 SMCR8Q8TEV9 937 aaPredicted RBP15.68■□□□□ 0.1
CD44-203ENST00000278386 GCC1Q96CN9 775 aa15.68■□□□□ 0.1
CD44-203ENST00000278386 OSBPL5Q9H0X9 879 aaPredicted RBP15.68■□□□□ 0.1
CD44-203ENST00000278386 SNRKQ9NRH2 765 aa15.68■□□□□ 0.1
CD44-203ENST00000278386 AFG3L2Q9Y4W6 797 aa15.68■□□□□ 0.1
CD44-203ENST00000278386 FPGT-TNNI3KV9GXZ4 949 aa15.68■□□□□ 0.1
CD44-203ENST00000278386 MAP4K4O95819 1239 aaPredicted RBP15.67■□□□□ 0.1
CD44-203ENST00000278386 BCRP11274 1271 aa15.67■□□□□ 0.1
CD44-203ENST00000278386 FCGRTP55899 365 aa15.67■□□□□ 0.1
CD44-203ENST00000278386 CCDC158Q5M9N0 1113 aa15.67■□□□□ 0.1
CD44-203ENST00000278386 DBNDD2Q9BQY9 259 aa15.67■□□□□ 0.1
CD44-203ENST00000278386 NPM3O75607 178 aaKnown RBP15.66■□□□□ 0.1
CD44-203ENST00000278386 SURF6O75683 361 aaKnown RBP15.66■□□□□ 0.1
CD44-203ENST00000278386 GRK4P32298 578 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms