RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 STAG1Q8WVM7 1258 aa17.95■□□□□ 0.46
CTDSP1-201ENST00000273062 MRPL44Q9H9J2 332 aaKnown RBP17.95■□□□□ 0.46
CTDSP1-201ENST00000273062 VEZTQ9HBM0 779 aa17.95■□□□□ 0.46
CTDSP1-201ENST00000273062 A1CFQ9NQ94 594 aaKnown RBP17.95■□□□□ 0.46
CTDSP1-201ENST00000273062 SAMM50Q9Y512 469 aa17.95■□□□□ 0.46
CTDSP1-201ENST00000273062 MRC1P22897 1456 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 SOS2Q07890 1332 aaPredicted RBP17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 FAM160A1Q05DH4 1040 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 MSL3Q8N5Y2 521 aaKnown RBP17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 CABS1Q96KC9 395 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 WDR17Q8IZU2 1322 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 KLHL33A6NCF5 533 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 H0YHG0 523 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 EBAG9O00559 213 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 SKAP2O75563 359 aaPredicted RBP17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 SARNPP82979 210 aaKnown RBP17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 FAM107BQ9H098 131 aa17.94■□□□□ 0.46
CTDSP1-201ENST00000273062 AOX1Q06278 1338 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 CDHR2Q9BYE9 1310 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 ERLIN1O75477 346 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 PDE6BP35913 854 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 FNTAP49354 379 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 GDAP1L1Q96MZ0 367 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 USP28Q96RU2 1077 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 SDF4Q9BRK5 362 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 TM6SF1Q9BZW5 370 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 NEDD4P46934 1319 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 A0A1B0GVL5 298 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 EME2A4GXA9 379 aaPredicted RBP17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 ATP5J2-PTCD1G3V325 749 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 PTCD1O75127 700 aaKnown RBP17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 PPFIA3O75145 1194 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 TOB2Q14106 344 aaPredicted RBP17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 MTF1Q14872 753 aa17.93■□□□□ 0.46
CTDSP1-201ENST00000273062 GCFC2P16383 781 aaKnown RBP17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 GCKRQ14397 625 aa17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 NECTIN1Q15223 517 aa17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 TEX11Q8IYF3 940 aa17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 ZNF526Q8TF50 670 aaPredicted RBP17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 UTYO14607 1347 aa17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 COL5A2P05997 1499 aaPredicted RBP17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 ARHGAP6O43182 974 aa17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 SASH1O94885 1247 aa17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 ACTN3Q08043 901 aaPredicted RBP17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 ANKRD13DQ6ZTN6 518 aa17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 ZCRB1Q8TBF4 217 aaKnown RBP17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 METTL22Q9BUU2 404 aaPredicted RBP17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 TLR7Q9NYK1 1049 aaKnown RBP17.92■□□□□ 0.46
CTDSP1-201ENST00000273062 GLI3P10071 1580 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 KIF3CO14782 793 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 NF2P35240 595 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 UBASH3AP57075 661 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 CFAP100Q494V2 611 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 CREB3L3Q68CJ9 461 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 NOA1Q8NC60 698 aaKnown RBP17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 ODF2LQ9ULJ1 636 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 ABCC6O95255 1503 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 H3BQV1 296 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 IRAK1P51617 712 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 HSP90AA4PQ58FG1 418 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 IFFO2Q5TF58 517 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 AACSQ86V21 672 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 LZTFL1Q9NQ48 299 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 CFAP45Q9UL16 551 aa17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 RBM8AQ9Y5S9 174 aaKnown RBP17.91■□□□□ 0.46
CTDSP1-201ENST00000273062 SHOX2O60902 331 aaPredicted RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 ME1P48163 572 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 SETQ01105 290 aaPredicted RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 DDR1Q08345 913 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 NEXNQ0ZGT2 675 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 PREPLQ4J6C6 727 aaPredicted RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 HSP90AB4PQ58FF6 505 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 FMR1NBQ8N0W7 255 aaPredicted RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 CNTROBQ8N137 903 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 CLASRPQ8N2M8 674 aaKnown RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 BCAS4Q8TDM0 211 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 SMARCC1Q92922 1105 aaPredicted RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 XAGE2Q96GT9 111 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 INTS13Q9NVM9 706 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 KIAA1468Q9P260 1216 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 RCOR1Q9UKL0 485 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 ZC3H4Q9UPT8 1303 aaKnown RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 NDUFA8P51970 172 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 ADKP55263 362 aaKnown RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 BAG1Q99933 345 aaPredicted RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 CCDC8Q9H0W5 538 aaPredicted RBP17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 FANCLQ9NW38 375 aa17.9■□□□□ 0.46
CTDSP1-201ENST00000273062 NBPF26B4DH59 902 aa17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 ZNF202O95125 648 aa17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 NBPF14Q5TI25 921 aa17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 NBPF10Q6P3W6 841 aaKnown RBP17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 FCHSD1Q86WN1 690 aa17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 POTEDQ86YR6 584 aa17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 NBPF15Q8N660 670 aa17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 KCNB2Q92953 911 aa17.89■□□□□ 0.46
CTDSP1-201ENST00000273062 SERPINC1P01008 464 aa17.89■□□□□ 0.45
CTDSP1-201ENST00000273062 VSTM4Q8IW00 320 aa17.89■□□□□ 0.45
CTDSP1-201ENST00000273062 EAF2Q96CJ1 260 aaPredicted RBP17.89■□□□□ 0.45
CTDSP1-201ENST00000273062 PCDH11XQ9BZA7 1347 aa17.89■□□□□ 0.45
CTDSP1-201ENST00000273062 PCDH11YQ9BZA8 1340 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms