RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 ZSWIM5Q9P217 1185 aa19.05■□□□□ 0.64
ZNF541-201ENST00000263351 KCNH3Q9ULD8 1083 aa19.05■□□□□ 0.64
ZNF541-201ENST00000263351 IQSEC3Q9UPP2 1182 aaPredicted RBP19.05■□□□□ 0.64
ZNF541-201ENST00000263351 H2AFXP16104 143 aaPredicted RBP19.05■□□□□ 0.64
ZNF541-201ENST00000263351 PDE6AP16499 860 aa19.05■□□□□ 0.64
ZNF541-201ENST00000263351 ETF1P62495 437 aaKnown RBP19.05■□□□□ 0.64
ZNF541-201ENST00000263351 TMEM67Q5HYA8 995 aa19.05■□□□□ 0.64
ZNF541-201ENST00000263351 FBXL16Q8N461 479 aa19.05■□□□□ 0.64
ZNF541-201ENST00000263351 TTLL11Q8NHH1 800 aa19.05■□□□□ 0.64
ZNF541-201ENST00000263351 AKAP11Q9UKA4 1901 aa19.05■□□□□ 0.64
ZNF541-201ENST00000263351 VWA3AA6NCI4 1184 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 ZBTB43O43298 467 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 KIF20AO95235 890 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 KARSQ15046 597 aaKnown RBP19.04■□□□□ 0.64
ZNF541-201ENST00000263351 SAMSN1Q9NSI8 373 aaKnown RBP19.04■□□□□ 0.64
ZNF541-201ENST00000263351 LAMB4A4D0S4 1761 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 WTIPA6NIX2 430 aaPredicted RBP19.04■□□□□ 0.64
ZNF541-201ENST00000263351 IARSP41252 1262 aaKnown RBP19.04■□□□□ 0.64
ZNF541-201ENST00000263351 RESP18Q5W5W9 173 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 TRERF1Q96PN7 1200 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 ZCCHC17Q9NP64 241 aaKnown RBP19.04■□□□□ 0.64
ZNF541-201ENST00000263351 SERTAD1Q9UHV2 236 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 PCDHB6Q9Y5E3 794 aa19.04■□□□□ 0.64
ZNF541-201ENST00000263351 ADAMTSL3P82987 1691 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 POLR3GO15318 223 aaPredicted RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 POLR2DO15514 142 aaKnown RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 TOP1P11387 765 aaKnown RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 CCDC102BQ68D86 513 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 KRBA2Q6ZNG9 492 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 VSTM4Q8IW00 320 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 AKAP2Q9Y2D5 859 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 ECM29Q5VYK3 1845 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 BAZ2BQ9UIF8 2168 aaKnown RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 LMTK3Q96Q04 1460 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 A0A0U1RQG5 324 aaPredicted RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 PSDA5PKW4 1024 aaPredicted RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 ZFYP08048 801 aaPredicted RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 NOM1Q5C9Z4 860 aaKnown RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 SMYD4Q8IYR2 804 aaPredicted RBP19.03■□□□□ 0.64
ZNF541-201ENST00000263351 MIGA1Q8NAN2 632 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 SHISA4Q96DD7 197 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 FAM53CQ9NYF3 392 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 PCDH11XQ9BZA7 1347 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 PCDH11YQ9BZA8 1340 aa19.03■□□□□ 0.64
ZNF541-201ENST00000263351 WNT7AO00755 349 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 MBD4O95243 580 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 PLA2G4AP47712 749 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 STX17P56962 302 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 MAGEB6Q8N7X4 407 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.02■□□□□ 0.64
ZNF541-201ENST00000263351 STAMQ92783 540 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 TBC1D2BQ9UPU7 963 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 PARP3Q9Y6F1 533 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 IFIT3O14879 490 aaKnown RBP19.02■□□□□ 0.64
ZNF541-201ENST00000263351 KCND1Q9NSA2 647 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 MAN1B1Q9UKM7 699 aa19.02■□□□□ 0.64
ZNF541-201ENST00000263351 PKD1L3Q7Z443 1732 aa19.02■□□□□ 0.63
ZNF541-201ENST00000263351 PNMA6AP0CW24 399 aaPredicted RBP19.01■□□□□ 0.63
ZNF541-201ENST00000263351 TPM4P67936 248 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 CPLX3Q8WVH0 158 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 CHMP4CQ96CF2 233 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 NFE2L3Q9Y4A8 694 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 IKBKBO14920 756 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 CSF1RP07333 972 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 GYS2P54840 703 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 EARS2Q5JPH6 523 aaKnown RBP19.01■□□□□ 0.63
ZNF541-201ENST00000263351 KLHL10Q6JEL2 608 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 NUP133Q8WUM0 1156 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 AIDAQ96BJ3 306 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 STRBPQ96SI9 672 aaKnown RBP19.01■□□□□ 0.63
ZNF541-201ENST00000263351 PPP2R2CQ9Y2T4 447 aa19.01■□□□□ 0.63
ZNF541-201ENST00000263351 SASH3O75995 380 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 EVX2Q03828 476 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 DIS3L2Q8IYB7 885 aaKnown RBP19■□□□□ 0.63
ZNF541-201ENST00000263351 VGLL2Q8N8G2 317 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 ZBTB38Q8NAP3 1195 aaPredicted RBP19■□□□□ 0.63
ZNF541-201ENST00000263351 PIGBQ92521 554 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 CCDC34Q96HJ3 373 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 SLC4A9Q96Q91 983 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 ATG3Q9NT62 314 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 A0A087X0B3 334 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 TCRBV5S4A2TA0A5A2 114 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 TEX33O43247 280 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 PRDM1O75626 825 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 PCCAP05165 728 aaPredicted RBP19■□□□□ 0.63
ZNF541-201ENST00000263351 MDM2Q00987 491 aaPredicted RBP19■□□□□ 0.63
ZNF541-201ENST00000263351 MYH7P12883 1935 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 DDX60Q8IY21 1712 aaKnown RBP19■□□□□ 0.63
ZNF541-201ENST00000263351 SPATA31A3Q5VYP0 1347 aa19■□□□□ 0.63
ZNF541-201ENST00000263351 GNG11P61952 73 aa18.99■□□□□ 0.63
ZNF541-201ENST00000263351 GABPB1Q06547 395 aaPredicted RBP18.99■□□□□ 0.63
ZNF541-201ENST00000263351 NLRP10Q86W26 655 aa18.99■□□□□ 0.63
ZNF541-201ENST00000263351 TEX13AQ9BXU3 409 aaPredicted RBP18.99■□□□□ 0.63
ZNF541-201ENST00000263351 IRS4O14654 1257 aaPredicted RBP18.99■□□□□ 0.63
ZNF541-201ENST00000263351 ABL1P00519 1130 aa18.99■□□□□ 0.63
ZNF541-201ENST00000263351 LCORLQ8N3X6 602 aa18.99■□□□□ 0.63
ZNF541-201ENST00000263351 TC2NQ8N9U0 490 aa18.99■□□□□ 0.63
ZNF541-201ENST00000263351 MRPL44Q9H9J2 332 aaKnown RBP18.99■□□□□ 0.63
ZNF541-201ENST00000263351 SLC12A7Q9Y666 1083 aa18.99■□□□□ 0.63
ZNF541-201ENST00000263351 SOWAHDA6NJG2 315 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms