RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 ARAFP10398 606 aa9.9□□□□□ -0.82
CXCR4-201ENST00000241393 RLBP1P12271 317 aa9.9□□□□□ -0.82
CXCR4-201ENST00000241393 ADH6P28332 368 aa9.9□□□□□ -0.82
CXCR4-201ENST00000241393 CTBSQ01459 385 aa9.9□□□□□ -0.82
CXCR4-201ENST00000241393 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.9□□□□□ -0.82
CXCR4-201ENST00000241393 DZIP1LQ8IYY4 767 aaKnown RBP9.9□□□□□ -0.82
CXCR4-201ENST00000241393 CHRDQ9H2X0 955 aa9.9□□□□□ -0.82
CXCR4-201ENST00000241393 NRXN3Q9Y4C0 1643 aa9.9□□□□□ -0.82
CXCR4-201ENST00000241393 CDK12Q9NYV4 1490 aaPredicted RBP9.9□□□□□ -0.83
CXCR4-201ENST00000241393 CALD1Q05682 793 aaKnown RBP9.9□□□□□ -0.83
CXCR4-201ENST00000241393 SYT9Q86SS6 491 aa9.9□□□□□ -0.83
CXCR4-201ENST00000241393 UBE2OQ9C0C9 1292 aaKnown RBP9.9□□□□□ -0.83
CXCR4-201ENST00000241393 ZFYVE1Q9HBF4 777 aa9.9□□□□□ -0.83
CXCR4-201ENST00000241393 ZFATQ9P243 1243 aa9.9□□□□□ -0.83
CXCR4-201ENST00000241393 AK5Q9Y6K8 562 aa9.9□□□□□ -0.83
CXCR4-201ENST00000241393 CPS1P31327 1500 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 KIF16BQ96L93 1317 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 LCE2BO14633 110 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 GHRHP01286 108 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 NEFMP07197 916 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 GPLD1P80108 840 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 TAGLNQ01995 201 aaKnown RBP9.89□□□□□ -0.83
CXCR4-201ENST00000241393 ALDH1L2Q3SY69 923 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 FTSJ3Q8IY81 847 aaKnown RBP9.89□□□□□ -0.83
CXCR4-201ENST00000241393 IRF7Q92985 503 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 DDX19BQ9UMR2 479 aa9.89□□□□□ -0.83
CXCR4-201ENST00000241393 LRRC7Q96NW7 1537 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 POTECB2RU33 542 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 IPO8O15397 1037 aaKnown RBP9.88□□□□□ -0.83
CXCR4-201ENST00000241393 VSIG8P0DPA2 414 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 VEGFBP49765 207 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 RIPK4P57078 832 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 EXOSC9Q06265 439 aaKnown RBP9.88□□□□□ -0.83
CXCR4-201ENST00000241393 HDAC1Q13547 482 aaPredicted RBP9.88□□□□□ -0.83
CXCR4-201ENST00000241393 KIAA0319Q5VV43 1072 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 USPL1Q5W0Q7 1092 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 TRPM4Q8TD43 1214 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 SUV39H2Q9H5I1 410 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 NPHS2Q9NP85 383 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 SMC4Q9NTJ3 1288 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 POLKQ9UBT6 870 aa9.88□□□□□ -0.83
CXCR4-201ENST00000241393 KIF4AO95239 1232 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 ATF7IPQ6VMQ6 1270 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 RAB44Q7Z6P3 723 aaPredicted RBP9.87□□□□□ -0.83
CXCR4-201ENST00000241393 EHD4Q9H223 541 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 C12orf49Q9H741 205 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 KANSL3Q9P2N6 904 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 FAM8A1Q9UBU6 413 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 SALL4Q9UJQ4 1053 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 GDF2Q9UK05 429 aaPredicted RBP9.87□□□□□ -0.83
CXCR4-201ENST00000241393 FAM177BA6PVY3 158 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 TERTO14746 1132 aaKnown RBP9.87□□□□□ -0.83
CXCR4-201ENST00000241393 POLR3DP05423 398 aaPredicted RBP9.87□□□□□ -0.83
CXCR4-201ENST00000241393 TBC1D8BQ0IIM8 1120 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 MRPL58Q14197 206 aaKnown RBP9.87□□□□□ -0.83
CXCR4-201ENST00000241393 MICALL1Q8N3F8 863 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 SSH1Q8WYL5 1049 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 IGFLR1Q9H665 355 aa9.87□□□□□ -0.83
CXCR4-201ENST00000241393 KIAA1522Q9P206 1035 aaPredicted RBP9.87□□□□□ -0.83
CXCR4-201ENST00000241393 MON2Q7Z3U7 1717 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 USP19O94966 1318 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 LOC102724428A0A0B4J2F2 783 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 XRCC5P13010 732 aaKnown RBP9.86□□□□□ -0.83
CXCR4-201ENST00000241393 TRIM27P14373 513 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 ALAS2P22557 587 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 SIK1P57059 783 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 TSNAXIP1Q2TAA8 658 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 WAPLQ7Z5K2 1190 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 GOLGA6L1Q8N7Z2 621 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 EPS8L3Q8TE67 593 aaKnown RBP9.86□□□□□ -0.83
CXCR4-201ENST00000241393 TNFRSF25Q93038 417 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 TSR2Q969E8 191 aaKnown RBP9.86□□□□□ -0.83
CXCR4-201ENST00000241393 CRELD1Q96HD1 420 aa9.86□□□□□ -0.83
CXCR4-201ENST00000241393 CHMP4BQ9H444 224 aaKnown RBP9.86□□□□□ -0.83
CXCR4-201ENST00000241393 METP08581 1390 aa9.85□□□□□ -0.83
CXCR4-201ENST00000241393 TNRQ92752 1358 aa9.85□□□□□ -0.83
CXCR4-201ENST00000241393 CYP2E1P05181 493 aaPredicted RBP9.85□□□□□ -0.83
CXCR4-201ENST00000241393 LMOD3Q0VAK6 560 aa9.85□□□□□ -0.83
CXCR4-201ENST00000241393 NFE2L2Q16236 605 aa9.85□□□□□ -0.83
CXCR4-201ENST00000241393 SETDB2Q96T68 719 aa9.85□□□□□ -0.83
CXCR4-201ENST00000241393 DNAJB12Q9NXW2 375 aaKnown RBP9.85□□□□□ -0.83
CXCR4-201ENST00000241393 LAS1LQ9Y4W2 734 aaKnown RBP9.85□□□□□ -0.83
CXCR4-201ENST00000241393 SCAMP3O14828 347 aaKnown RBP9.84□□□□□ -0.83
CXCR4-201ENST00000241393 SMNDC1O75940 238 aaKnown RBP eCLIP9.84□□□□□ -0.83
CXCR4-201ENST00000241393 GSTT1P30711 240 aa9.84□□□□□ -0.83
CXCR4-201ENST00000241393 PRKAR2BP31323 418 aa9.84□□□□□ -0.83
CXCR4-201ENST00000241393 GRIN2CQ14957 1233 aa9.84□□□□□ -0.83
CXCR4-201ENST00000241393 ARHGAP45Q92619 1136 aa9.84□□□□□ -0.83
CXCR4-201ENST00000241393 UPF2Q9HAU5 1272 aaKnown RBP9.84□□□□□ -0.83
CXCR4-201ENST00000241393 TNNQ9UQP3 1299 aa9.84□□□□□ -0.83
CXCR4-201ENST00000241393 AKAP12Q02952 1782 aa9.84□□□□□ -0.83
CXCR4-201ENST00000241393 TMEM2Q9UHN6 1383 aa9.84□□□□□ -0.83
CXCR4-201ENST00000241393 IL13P35225 146 aa9.83□□□□□ -0.84
CXCR4-201ENST00000241393 BECN1Q14457 450 aa9.83□□□□□ -0.84
CXCR4-201ENST00000241393 SMC5Q8IY18 1101 aa9.83□□□□□ -0.84
CXCR4-201ENST00000241393 NSUN5Q96P11 429 aaKnown RBP9.83□□□□□ -0.84
CXCR4-201ENST00000241393 BCO2Q9BYV7 579 aa9.83□□□□□ -0.84
CXCR4-201ENST00000241393 LIN7BQ9HAP6 207 aa9.83□□□□□ -0.84
CXCR4-201ENST00000241393 IFT57Q9NWB7 429 aa9.83□□□□□ -0.84
CXCR4-201ENST00000241393 MAP2P11137 1827 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms