RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 COPRSQ9NQ92 184 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 A0A1B0GUL7 405 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 SGSM2O43147 1006 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 PPP1R12BO60237 982 aaPredicted RBP10.28□□□□□ -0.76
VPS4B-201ENST00000238497 RASA3Q14644 834 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 ARMC9Q7Z3E5 817 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 STAP2Q9UGK3 403 aa10.27□□□□□ -0.76
VPS4B-201ENST00000238497 SMC3Q9UQE7 1217 aa10.27□□□□□ -0.76
VPS4B-201ENST00000238497 AKAP2Q9Y2D5 859 aa10.27□□□□□ -0.76
VPS4B-201ENST00000238497 FAM205AQ6ZU69 1335 aa10.27□□□□□ -0.76
VPS4B-201ENST00000238497 AK2P54819 239 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 KIF23Q02241 960 aaPredicted RBP10.27□□□□□ -0.77
VPS4B-201ENST00000238497 DIXDC1Q155Q3 683 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 WDR66Q8TBY9 1149 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 CCDC102AQ96A19 550 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 WBP1LQ9NX94 342 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 SNX14Q9Y5W7 946 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 AOX1Q06278 1338 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 IRS2Q9Y4H2 1338 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 A0A0D9SFI3 127 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 CIAO1O76071 339 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 LDHBP07195 334 aaKnown RBP10.27□□□□□ -0.77
VPS4B-201ENST00000238497 L1TD1Q5T7N2 865 aaKnown RBP10.27□□□□□ -0.77
VPS4B-201ENST00000238497 DZIP1Q86YF9 867 aaKnown RBP10.27□□□□□ -0.77
VPS4B-201ENST00000238497 XAGE2Q96GT9 111 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 PDRG1Q9NUG6 133 aa10.27□□□□□ -0.77
VPS4B-201ENST00000238497 RBM8AQ9Y5S9 174 aaKnown RBP10.27□□□□□ -0.77
VPS4B-201ENST00000238497 PITPNM2Q9BZ72 1349 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 FIBPO43427 364 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 TRPA1O75762 1119 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 XRCC6P12956 609 aaKnown RBP eCLIP10.26□□□□□ -0.77
VPS4B-201ENST00000238497 FGFR2P21802 821 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 PRDX5P30044 214 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 TNFAIP1Q13829 316 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 NBPF12Q5TAG4 269 aaPredicted RBP10.26□□□□□ -0.77
VPS4B-201ENST00000238497 CCDC102BQ68D86 513 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 CHST3Q7LGC8 479 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 EVI5LQ96CN4 794 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 ZNF70Q9UC06 446 aaPredicted RBP10.26□□□□□ -0.77
VPS4B-201ENST00000238497 AK9Q5TCS8 1911 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 MAP2K2P36507 400 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 TCP10Q12799 353 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 SUPT20HL1Q3ZLR7 823 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 TRIM44Q96DX7 344 aaPredicted RBP10.26□□□□□ -0.77
VPS4B-201ENST00000238497 DBNLQ9UJU6 430 aaKnown RBP10.26□□□□□ -0.77
VPS4B-201ENST00000238497 FBXO3Q9UK99 471 aa10.26□□□□□ -0.77
VPS4B-201ENST00000238497 CIZ1Q9ULV3 898 aaPredicted RBP10.26□□□□□ -0.77
VPS4B-201ENST00000238497 TNNI2P48788 182 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 ANP32BQ92688 251 aaKnown RBP10.25□□□□□ -0.77
VPS4B-201ENST00000238497 SLC10A4Q96EP9 437 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 SERPINA10Q9UK55 444 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 DENND2AQ9ULE3 1009 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 CYP46A1Q9Y6A2 500 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 RAB11FIP4Q86YS3 637 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 ZSCAN29Q8IWY8 852 aaPredicted RBP10.25□□□□□ -0.77
VPS4B-201ENST00000238497 TMEM39BQ9GZU3 492 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 COL9A3Q14050 684 aaPredicted RBP10.25□□□□□ -0.77
VPS4B-201ENST00000238497 TNNI3KQ59H18 835 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 DDX11Q96FC9 970 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 RAI14Q9P0K7 980 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 FPGT-TNNI3KV9GXZ4 949 aa10.25□□□□□ -0.77
VPS4B-201ENST00000238497 APPP05067 770 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 MMP14P50281 582 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 HAND2P61296 217 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 TTC39AQ5SRH9 613 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 ZNF589Q86UQ0 364 aaPredicted RBP10.24□□□□□ -0.77
VPS4B-201ENST00000238497 GAS2L3Q86XJ1 694 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 TAF6LQ9Y6J9 622 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 MAST3O60307 1309 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 SALL3Q9BXA9 1300 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 FKBP1AP62942 108 aaKnown RBP10.24□□□□□ -0.77
VPS4B-201ENST00000238497 CEBPZQ03701 1054 aaKnown RBP10.24□□□□□ -0.77
VPS4B-201ENST00000238497 FAM173BQ6P4H8 233 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 PI16Q6UXB8 463 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 ADAMTSL1Q8N6G6 1762 aa10.24□□□□□ -0.77
VPS4B-201ENST00000238497 RASGRF1Q13972 1273 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 CDAN1Q8IWY9 1227 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 GRPEL1Q9HAV7 217 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 LRP2BPQ9P2M1 347 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 LARGE1O95461 756 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 HSPA4P34932 840 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 IREB2P48200 963 aaKnown RBP10.23□□□□□ -0.77
VPS4B-201ENST00000238497 FKBP1BP68106 108 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 CCDC158Q5M9N0 1113 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 LSG1Q9H089 658 aaKnown RBP10.23□□□□□ -0.77
VPS4B-201ENST00000238497 CWC22Q9HCG8 908 aaKnown RBP10.23□□□□□ -0.77
VPS4B-201ENST00000238497 TTC41PQ6P2S7 1318 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 SYCE3A1L190 88 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 PICALMQ13492 652 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 SPDYE2Q495Y8 402 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 BLOC1S2Q6QNY1 142 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 MIGA2Q7L4E1 593 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 CLMNQ96JQ2 1002 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 USP40Q9NVE5 1235 aa10.23□□□□□ -0.77
VPS4B-201ENST00000238497 HSPA8P11142 646 aaKnown RBP10.22□□□□□ -0.77
VPS4B-201ENST00000238497 MTX1Q13505 466 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 CREB3L3Q68CJ9 461 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 RAD50Q92878 1312 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 RASAL3Q86YV0 1011 aa10.22□□□□□ -0.77
VPS4B-201ENST00000238497 MTMR14Q8NCE2 650 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms