RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 EIF5BO60841 1220 aaKnown RBP8.12□□□□□ -1.11
SCN1A-217ENST00000637988 CASC1Q6TDU7 716 aa8.11□□□□□ -1.11
SCN1A-217ENST00000637988 SENP3Q9H4L4 574 aaPredicted RBP8.1□□□□□ -1.11
SCN1A-217ENST00000637988 KRI1Q8N9T8 703 aaKnown RBP8.1□□□□□ -1.11
SCN1A-217ENST00000637988 PLEKHD1A6NEE1 506 aa8.09□□□□□ -1.11
SCN1A-217ENST00000637988 TMC1Q8TDI8 760 aa8.09□□□□□ -1.11
SCN1A-217ENST00000637988 NCLP19338 710 aaKnown RBP8.09□□□□□ -1.11
SCN1A-217ENST00000637988 CLSTN1O94985 981 aa8.09□□□□□ -1.11
SCN1A-217ENST00000637988 NCBP3Q53F19 620 aaKnown RBP8.09□□□□□ -1.11
SCN1A-217ENST00000637988 CFAP53Q96M91 514 aa8.09□□□□□ -1.11
SCN1A-217ENST00000637988 CCDC180Q9P1Z9 1646 aa8.09□□□□□ -1.11
SCN1A-217ENST00000637988 MTUS2Q5JR59 1369 aa8.08□□□□□ -1.12
SCN1A-217ENST00000637988 KDM2AQ9Y2K7 1162 aa8.07□□□□□ -1.12
SCN1A-217ENST00000637988 CDCA8Q53HL2 280 aa8.07□□□□□ -1.12
SCN1A-217ENST00000637988 POGKQ9P215 609 aa8.06□□□□□ -1.12
SCN1A-217ENST00000637988 KANK1Q14678 1352 aa8.04□□□□□ -1.12
SCN1A-217ENST00000637988 PPM1GO15355 546 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-217ENST00000637988 PNNQ9H307 717 aaKnown RBP8.04□□□□□ -1.12
SCN1A-217ENST00000637988 FOXD1Q16676 465 aa8.04□□□□□ -1.12
SCN1A-217ENST00000637988 ISY1Q9ULR0 285 aaKnown RBP8.04□□□□□ -1.12
SCN1A-217ENST00000637988 RSF1Q96T23 1441 aaPredicted RBP8.04□□□□□ -1.12
SCN1A-217ENST00000637988 CCDC9Q9Y3X0 531 aaKnown RBP8.04□□□□□ -1.12
SCN1A-217ENST00000637988 CSRNP3Q8WYN3 585 aa8.03□□□□□ -1.12
SCN1A-217ENST00000637988 G3V3G9 751 aa8.03□□□□□ -1.12
SCN1A-217ENST00000637988 DCAF8Q5TAQ9 597 aa8.03□□□□□ -1.12
SCN1A-217ENST00000637988 CHIC2Q9UKJ5 165 aa8.03□□□□□ -1.12
SCN1A-217ENST00000637988 OS9Q13438 667 aaPredicted RBP8.01□□□□□ -1.13
SCN1A-217ENST00000637988 ANP32EQ9BTT0 268 aa8.01□□□□□ -1.13
SCN1A-217ENST00000637988 CHMP4BQ9H444 224 aaKnown RBP8□□□□□ -1.13
SCN1A-217ENST00000637988 SALL2Q9Y467 1007 aaPredicted RBP8□□□□□ -1.13
SCN1A-217ENST00000637988 FGD1P98174 961 aa8□□□□□ -1.13
SCN1A-217ENST00000637988 MAPK8IP3Q9UPT6 1336 aa8□□□□□ -1.13
SCN1A-217ENST00000637988 PRM3Q9NNZ6 103 aa8□□□□□ -1.13
SCN1A-217ENST00000637988 NUDCQ9Y266 331 aa7.99□□□□□ -1.13
SCN1A-217ENST00000637988 TRIM44Q96DX7 344 aaPredicted RBP7.99□□□□□ -1.13
SCN1A-217ENST00000637988 MEX3CQ5U5Q3 659 aaKnown RBP7.99□□□□□ -1.13
SCN1A-217ENST00000637988 GOLGA6L22H0YM25 854 aa7.98□□□□□ -1.13
SCN1A-217ENST00000637988 MLECQ14165 292 aa7.98□□□□□ -1.13
SCN1A-217ENST00000637988 GOLGA6L6A8MZA4 724 aa7.98□□□□□ -1.13
SCN1A-217ENST00000637988 FTSJ3Q8IY81 847 aaKnown RBP7.98□□□□□ -1.13
SCN1A-217ENST00000637988 FAM9BQ8IZU0 186 aa7.98□□□□□ -1.13
SCN1A-217ENST00000637988 KNSTRNQ9Y448 316 aa7.97□□□□□ -1.13
SCN1A-217ENST00000637988 PHF23Q9BUL5 403 aaPredicted RBP7.97□□□□□ -1.13
SCN1A-217ENST00000637988 CLIP1P30622 1438 aa7.96□□□□□ -1.14
SCN1A-217ENST00000637988 BECN1Q14457 450 aa7.96□□□□□ -1.14
SCN1A-217ENST00000637988 LAS1LQ9Y4W2 734 aaKnown RBP7.96□□□□□ -1.14
SCN1A-217ENST00000637988 CSB-PGBD3P0DP91 1061 aa7.95□□□□□ -1.14
SCN1A-217ENST00000637988 KCNJ4P48050 445 aa7.95□□□□□ -1.14
SCN1A-217ENST00000637988 NAP1L2Q9ULW6 460 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-217ENST00000637988 L1TD1Q5T7N2 865 aaKnown RBP7.94□□□□□ -1.14
SCN1A-217ENST00000637988 CFDP1Q9UEE9 299 aaPredicted RBP7.94□□□□□ -1.14
SCN1A-217ENST00000637988 HNRNPUQ00839 825 aaKnown RBP eCLIP7.93□□□□□ -1.14
SCN1A-217ENST00000637988 TAOK2Q9UL54 1235 aa7.93□□□□□ -1.14
SCN1A-217ENST00000637988 PAK3O75914 559 aaPredicted RBP7.93□□□□□ -1.14
SCN1A-217ENST00000637988 KIAA2012Q0VF49 1180 aa7.93□□□□□ -1.14
SCN1A-217ENST00000637988 EID1Q9Y6B2 187 aa7.93□□□□□ -1.14
SCN1A-217ENST00000637988 RTF1Q92541 710 aaKnown RBP7.93□□□□□ -1.14
SCN1A-217ENST00000637988 BAZ1BQ9UIG0 1483 aaKnown RBP7.93□□□□□ -1.14
SCN1A-217ENST00000637988 NRDCO43847 1150 aa7.93□□□□□ -1.14
SCN1A-217ENST00000637988 CCDC136Q96JN2 1154 aa7.92□□□□□ -1.14
SCN1A-217ENST00000637988 GLIPR1L2Q4G1C9 344 aa7.92□□□□□ -1.14
SCN1A-217ENST00000637988 CHMP4AQ9BY43 222 aa7.92□□□□□ -1.14
SCN1A-217ENST00000637988 RGL3Q3MIN7 710 aa7.92□□□□□ -1.14
SCN1A-217ENST00000637988 GNL2Q13823 731 aaKnown RBP7.91□□□□□ -1.14
SCN1A-217ENST00000637988 SRPK2P78362 688 aaKnown RBP7.91□□□□□ -1.14
SCN1A-217ENST00000637988 EIF4G1Q04637 1599 aaKnown RBP7.9□□□□□ -1.14
SCN1A-217ENST00000637988 MS4A1P11836 297 aa7.9□□□□□ -1.14
SCN1A-217ENST00000637988 NACADO15069 1562 aa7.9□□□□□ -1.14
SCN1A-217ENST00000637988 CHAF1AQ13111 956 aaPredicted RBP7.9□□□□□ -1.14
SCN1A-217ENST00000637988 ZNF330Q9Y3S2 320 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-217ENST00000637988 CWC22Q9HCG8 908 aaKnown RBP7.88□□□□□ -1.15
SCN1A-217ENST00000637988 MRS2Q9HD23 443 aa7.88□□□□□ -1.15
SCN1A-217ENST00000637988 FKBP8Q14318 412 aa7.87□□□□□ -1.15
SCN1A-217ENST00000637988 MSH5O43196 834 aa7.87□□□□□ -1.15
SCN1A-217ENST00000637988 GTF2E1P29083 439 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-217ENST00000637988 RRP7BPQ9NSQ0 103 aa7.87□□□□□ -1.15
SCN1A-217ENST00000637988 PTMAP06454 111 aaKnown RBP7.87□□□□□ -1.15
SCN1A-217ENST00000637988 CNKSR2Q8WXI2 1034 aa7.87□□□□□ -1.15
SCN1A-217ENST00000637988 TAF7LQ5H9L4 462 aa7.87□□□□□ -1.15
SCN1A-217ENST00000637988 SOX12O15370 315 aa7.86□□□□□ -1.15
SCN1A-217ENST00000637988 MCCP23508 829 aa7.86□□□□□ -1.15
SCN1A-217ENST00000637988 DDRGK1Q96HY6 314 aa7.86□□□□□ -1.15
SCN1A-217ENST00000637988 EVA1CP58658 441 aa7.86□□□□□ -1.15
SCN1A-217ENST00000637988 CFAP44Q96MT7 982 aa7.86□□□□□ -1.15
SCN1A-217ENST00000637988 U2SURPO15042 1029 aaKnown RBP7.85□□□□□ -1.15
SCN1A-217ENST00000637988 HDGFL2Q7Z4V5 671 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-217ENST00000637988 CARMIL2Q6F5E8 1435 aa7.85□□□□□ -1.15
SCN1A-217ENST00000637988 GOLGA6L4A6NEF3 574 aa7.85□□□□□ -1.15
SCN1A-217ENST00000637988 TRIM34Q9BYJ4 488 aa7.85□□□□□ -1.15
SCN1A-217ENST00000637988 ANO8Q9HCE9 1232 aaPredicted RBP7.85□□□□□ -1.15
SCN1A-217ENST00000637988 CTDP1Q9Y5B0 961 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-217ENST00000637988 GORABQ5T7V8 394 aa7.84□□□□□ -1.15
SCN1A-217ENST00000637988 ZCCHC6Q5VYS8 1495 aaKnown RBP7.84□□□□□ -1.15
SCN1A-217ENST00000637988 TCEAL9Q9UHQ7 104 aa7.84□□□□□ -1.15
SCN1A-217ENST00000637988 KAT6BQ8WYB5 2073 aa7.84□□□□□ -1.15
SCN1A-217ENST00000637988 HDAC5Q9UQL6 1122 aa7.84□□□□□ -1.16
SCN1A-217ENST00000637988 KIF27Q86VH2 1401 aa7.83□□□□□ -1.16
SCN1A-217ENST00000637988 FRAT2O75474 233 aaPredicted RBP7.83□□□□□ -1.16
SCN1A-217ENST00000637988 CALD1Q05682 793 aaKnown RBP7.83□□□□□ -1.16
SCN1A-217ENST00000637988 DDX10Q13206 875 aaKnown RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms