RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 POTEGQ6S5H5 508 aa4.85□□□□□ -1.63
SMARCB1-209ENST00000635578 ATMINO43313 823 aaPredicted RBP4.83□□□□□ -1.64
SMARCB1-209ENST00000635578 ASTLQ6HA08 431 aaPredicted RBP4.83□□□□□ -1.64
SMARCB1-209ENST00000635578 POTEJP0CG39 1038 aa4.82□□□□□ -1.64
SMARCB1-209ENST00000635578 C7P10643 843 aa4.82□□□□□ -1.64
SMARCB1-209ENST00000635578 SLC39A7Q92504 469 aa4.82□□□□□ -1.64
SMARCB1-209ENST00000635578 ATN1P54259 1190 aaPredicted RBP4.8□□□□□ -1.64
SMARCB1-209ENST00000635578 MAMSTRQ6ZN01 415 aa4.79□□□□□ -1.64
SMARCB1-209ENST00000635578 FAM163AQ96GL9 167 aaPredicted RBP4.79□□□□□ -1.64
SMARCB1-209ENST00000635578 CCDC61Q9Y6R9 512 aa4.79□□□□□ -1.64
SMARCB1-209ENST00000635578 TRPC6Q9Y210 931 aa4.78□□□□□ -1.64
SMARCB1-209ENST00000635578 KIF12Q96FN5 646 aa4.77□□□□□ -1.65
SMARCB1-209ENST00000635578 SCUBE2Q9NQ36 999 aa4.77□□□□□ -1.65
SMARCB1-209ENST00000635578 BMP2KQ9NSY1 1161 aaPredicted RBP4.77□□□□□ -1.65
SMARCB1-209ENST00000635578 MAP3K13O43283 966 aa4.76□□□□□ -1.65
SMARCB1-209ENST00000635578 MIER1Q8N108 512 aa4.76□□□□□ -1.65
SMARCB1-209ENST00000635578 LCE2DQ5TA82 110 aaPredicted RBP4.75□□□□□ -1.65
SMARCB1-209ENST00000635578 RASEFQ8IZ41 740 aa4.75□□□□□ -1.65
SMARCB1-209ENST00000635578 POTEFA5A3E0 1075 aa4.74□□□□□ -1.65
SMARCB1-209ENST00000635578 PLEKHG5O94827 1062 aa4.74□□□□□ -1.65
SMARCB1-209ENST00000635578 SEC24BO95487 1268 aa4.74□□□□□ -1.65
SMARCB1-209ENST00000635578 PROM2Q8N271 834 aa4.74□□□□□ -1.65
SMARCB1-209ENST00000635578 COLQQ9Y215 455 aaPredicted RBP4.73□□□□□ -1.65
SMARCB1-209ENST00000635578 TTLL13PA6NNM8 815 aa4.72□□□□□ -1.65
SMARCB1-209ENST00000635578 PCDH10Q9P2E7 1040 aa4.72□□□□□ -1.65
SMARCB1-209ENST00000635578 TIE1P35590 1138 aa4.71□□□□□ -1.66
SMARCB1-209ENST00000635578 PLCD3Q8N3E9 789 aa4.71□□□□□ -1.66
SMARCB1-209ENST00000635578 PCDHB13Q9Y5F0 798 aa4.7□□□□□ -1.66
SMARCB1-209ENST00000635578 TRIM35Q9UPQ4 493 aa4.69□□□□□ -1.66
SMARCB1-209ENST00000635578 IFNL1Q8IU54 200 aa4.66□□□□□ -1.66
SMARCB1-209ENST00000635578 CDAN1Q8IWY9 1227 aa4.66□□□□□ -1.66
SMARCB1-209ENST00000635578 SLAIN1Q8ND83 568 aa4.66□□□□□ -1.66
SMARCB1-209ENST00000635578 TMEM106CQ9BVX2 250 aa4.66□□□□□ -1.66
SMARCB1-209ENST00000635578 IER5LQ5T953 404 aa4.65□□□□□ -1.67
SMARCB1-209ENST00000635578 PLCG2P16885 1265 aa4.64□□□□□ -1.67
SMARCB1-209ENST00000635578 NUBP1P53384 320 aa4.64□□□□□ -1.67
SMARCB1-209ENST00000635578 FAM212AQ96EL1 285 aa4.64□□□□□ -1.67
SMARCB1-209ENST00000635578 ST18O60284 1047 aa4.63□□□□□ -1.67
SMARCB1-209ENST00000635578 SGIP1Q9BQI5 828 aa4.63□□□□□ -1.67
SMARCB1-209ENST00000635578 ZBTB47Q9UFB7 747 aaPredicted RBP4.63□□□□□ -1.67
SMARCB1-209ENST00000635578 PYGBP11216 843 aa4.6□□□□□ -1.67
SMARCB1-209ENST00000635578 IRX5P78411 483 aaPredicted RBP4.59□□□□□ -1.67
SMARCB1-209ENST00000635578 DCAF8Q5TAQ9 597 aa4.59□□□□□ -1.67
SMARCB1-209ENST00000635578 MARVELD3Q96A59 401 aa4.59□□□□□ -1.67
SMARCB1-209ENST00000635578 PCDHB8Q9UN66 801 aa4.59□□□□□ -1.67
SMARCB1-209ENST00000635578 FKBP8Q14318 412 aa4.58□□□□□ -1.68
SMARCB1-209ENST00000635578 OCEL1Q9H607 264 aa4.57□□□□□ -1.68
SMARCB1-209ENST00000635578 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.56□□□□□ -1.68
SMARCB1-209ENST00000635578 SNPHO15079 494 aa4.54□□□□□ -1.68
SMARCB1-209ENST00000635578 GOLGA2Q08379 1002 aa4.54□□□□□ -1.68
SMARCB1-209ENST00000635578 MMRN1Q13201 1228 aa4.54□□□□□ -1.68
SMARCB1-209ENST00000635578 SPNS2Q8IVW8 549 aa4.54□□□□□ -1.68
SMARCB1-209ENST00000635578 TMEM121BQ9BXQ6 578 aaPredicted RBP4.54□□□□□ -1.68
SMARCB1-209ENST00000635578 C3orf67Q6ZVT6 689 aa4.53□□□□□ -1.68
SMARCB1-209ENST00000635578 EMP3P54852 163 aa4.52□□□□□ -1.69
SMARCB1-209ENST00000635578 KLHL34Q8N239 644 aa4.52□□□□□ -1.69
SMARCB1-209ENST00000635578 MKRN3Q13064 507 aaKnown RBP4.51□□□□□ -1.69
SMARCB1-209ENST00000635578 PDCD7Q8N8D1 485 aaKnown RBP4.51□□□□□ -1.69
SMARCB1-209ENST00000635578 ZNF467Q7Z7K2 595 aaPredicted RBP4.49□□□□□ -1.69
SMARCB1-209ENST00000635578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.49□□□□□ -1.69
SMARCB1-209ENST00000635578 FAM205CA6NFA0 338 aa4.48□□□□□ -1.69
SMARCB1-209ENST00000635578 PSEN1P49768 467 aa4.48□□□□□ -1.69
SMARCB1-209ENST00000635578 GSE1Q14687 1217 aa4.48□□□□□ -1.69
SMARCB1-209ENST00000635578 L3MBTL3Q96JM7 780 aaPredicted RBP4.48□□□□□ -1.69
SMARCB1-209ENST00000635578 FBXO3Q9UK99 471 aa4.48□□□□□ -1.69
SMARCB1-209ENST00000635578 POTEB3A0JP26 581 aa4.47□□□□□ -1.69
SMARCB1-209ENST00000635578 POTEBQ6S5H4 581 aa4.47□□□□□ -1.69
SMARCB1-209ENST00000635578 HS3ST6Q96QI5 342 aa4.47□□□□□ -1.69
SMARCB1-209ENST00000635578 VASPP50552 380 aaPredicted RBP4.46□□□□□ -1.7
SMARCB1-209ENST00000635578 DPY19L2Q6NUT2 758 aa4.46□□□□□ -1.7
SMARCB1-209ENST00000635578 G3V3G9 751 aa4.45□□□□□ -1.7
SMARCB1-209ENST00000635578 KRTAP3-3Q9BYR6 98 aa4.45□□□□□ -1.7
SMARCB1-209ENST00000635578 KRTAP3-2Q9BYR7 98 aa4.45□□□□□ -1.7
SMARCB1-209ENST00000635578 CABP2Q9NPB3 220 aa4.44□□□□□ -1.7
SMARCB1-209ENST00000635578 PDAP1Q13442 181 aaKnown RBP4.43□□□□□ -1.7
SMARCB1-209ENST00000635578 CIZ1Q9ULV3 898 aaPredicted RBP4.43□□□□□ -1.7
SMARCB1-209ENST00000635578 CHRM1P11229 460 aaPredicted RBP4.42□□□□□ -1.7
SMARCB1-209ENST00000635578 ZNF710Q8N1W2 664 aa4.42□□□□□ -1.7
SMARCB1-209ENST00000635578 BOLA1Q9Y3E2 137 aa4.42□□□□□ -1.7
SMARCB1-209ENST00000635578 HOXB3P14651 431 aaPredicted RBP4.4□□□□□ -1.71
SMARCB1-209ENST00000635578 ERBB3P21860 1342 aa4.4□□□□□ -1.71
SMARCB1-209ENST00000635578 ILDR1Q86SU0 546 aaPredicted RBP4.39□□□□□ -1.71
SMARCB1-209ENST00000635578 DOK7Q18PE1 504 aa4.38□□□□□ -1.71
SMARCB1-209ENST00000635578 SPOCK2Q92563 424 aa4.38□□□□□ -1.71
SMARCB1-209ENST00000635578 HOXB1P14653 301 aaPredicted RBP4.37□□□□□ -1.71
SMARCB1-209ENST00000635578 VARS2Q5ST30 1063 aaKnown RBP4.37□□□□□ -1.71
SMARCB1-209ENST00000635578 IFNLR1Q8IU57 520 aaPredicted RBP4.36□□□□□ -1.71
SMARCB1-209ENST00000635578 EFCAB3Q8N7B9 438 aa4.36□□□□□ -1.71
SMARCB1-209ENST00000635578 RNF166Q96A37 237 aaPredicted RBP4.36□□□□□ -1.71
SMARCB1-209ENST00000635578 RIMBP2O15034 1052 aa4.35□□□□□ -1.71
SMARCB1-209ENST00000635578 MYT1LQ9UL68 1186 aa4.34□□□□□ -1.71
SMARCB1-209ENST00000635578 TMEM92Q6UXU6 159 aa4.33□□□□□ -1.72
SMARCB1-209ENST00000635578 MICALL2Q8IY33 904 aa4.33□□□□□ -1.72
SMARCB1-209ENST00000635578 ANKRD13DQ6ZTN6 518 aa4.31□□□□□ -1.72
SMARCB1-209ENST00000635578 ARSIQ5FYB1 569 aa4.3□□□□□ -1.72
SMARCB1-209ENST00000635578 GPR153Q6NV75 609 aa4.29□□□□□ -1.72
SMARCB1-209ENST00000635578 ZNF687Q8N1G0 1237 aa4.29□□□□□ -1.72
SMARCB1-209ENST00000635578 KHSRPQ92945 711 aaKnown RBP eCLIP4.29□□□□□ -1.72
SMARCB1-209ENST00000635578 MS4A4AQ96JQ5 239 aa4.29□□□□□ -1.72
SMARCB1-209ENST00000635578 ZSWIM6Q9HCJ5 1215 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms