RNA–Protein interactions for RNA: ENST00000635562.1

PSPC1-208, Transcript of paraspeckle component 1, humanhuman

TSL 3

Gene PSPC1, Length 422 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-208ENST00000635562 MS4A3Q96HJ5 214 aa7.9□□□□□ -1.14
PSPC1-208ENST00000635562 FKBP8Q14318 412 aa7.88□□□□□ -1.15
PSPC1-208ENST00000635562 SLC39A7Q92504 469 aa7.88□□□□□ -1.15
PSPC1-208ENST00000635562 C7P10643 843 aa7.86□□□□□ -1.15
PSPC1-208ENST00000635562 KIF12Q96FN5 646 aa7.86□□□□□ -1.15
PSPC1-208ENST00000635562 FBXO3Q9UK99 471 aa7.86□□□□□ -1.15
PSPC1-208ENST00000635562 ATMINO43313 823 aaPredicted RBP7.84□□□□□ -1.15
PSPC1-208ENST00000635562 RASEFQ8IZ41 740 aa7.84□□□□□ -1.15
PSPC1-208ENST00000635562 SGIP1Q9BQI5 828 aa7.84□□□□□ -1.15
PSPC1-208ENST00000635562 TIE1P35590 1138 aa7.82□□□□□ -1.16
PSPC1-208ENST00000635562 METRNQ9UJH8 293 aa7.82□□□□□ -1.16
PSPC1-208ENST00000635562 FAM212AQ96EL1 285 aa7.81□□□□□ -1.16
PSPC1-208ENST00000635562 MAMSTRQ6ZN01 415 aa7.8□□□□□ -1.16
PSPC1-208ENST00000635562 MAP3K13O43283 966 aa7.79□□□□□ -1.16
PSPC1-208ENST00000635562 PELP1Q8IZL8 1130 aaKnown RBP7.79□□□□□ -1.16
PSPC1-208ENST00000635562 NUBP1P53384 320 aa7.78□□□□□ -1.16
PSPC1-208ENST00000635562 OTUD5Q96G74 571 aa7.77□□□□□ -1.17
PSPC1-208ENST00000635562 ATN1P54259 1190 aaPredicted RBP7.76□□□□□ -1.17
PSPC1-208ENST00000635562 BMP2KQ9NSY1 1161 aaPredicted RBP7.76□□□□□ -1.17
PSPC1-208ENST00000635562 PCDHB13Q9Y5F0 798 aa7.76□□□□□ -1.17
PSPC1-208ENST00000635562 POTEB2H3BUK9 544 aa7.75□□□□□ -1.17
PSPC1-208ENST00000635562 SCUBE2Q9NQ36 999 aa7.74□□□□□ -1.17
PSPC1-208ENST00000635562 IER5LQ5T953 404 aa7.73□□□□□ -1.17
PSPC1-208ENST00000635562 TTLL13PA6NNM8 815 aa7.72□□□□□ -1.17
PSPC1-208ENST00000635562 SEC24BO95487 1268 aa7.7□□□□□ -1.18
PSPC1-208ENST00000635562 TRPC6Q9Y210 931 aa7.68□□□□□ -1.18
PSPC1-208ENST00000635562 VASPP50552 380 aaPredicted RBP7.67□□□□□ -1.18
PSPC1-208ENST00000635562 GSE1Q14687 1217 aa7.67□□□□□ -1.18
PSPC1-208ENST00000635562 DCAF8Q5TAQ9 597 aa7.67□□□□□ -1.18
PSPC1-208ENST00000635562 IFNL1Q8IU54 200 aa7.67□□□□□ -1.18
PSPC1-208ENST00000635562 TRIM35Q9UPQ4 493 aa7.67□□□□□ -1.18
PSPC1-208ENST00000635562 KLHL34Q8N239 644 aa7.65□□□□□ -1.18
PSPC1-208ENST00000635562 TMEM106CQ9BVX2 250 aa7.64□□□□□ -1.19
PSPC1-208ENST00000635562 POTEJP0CG39 1038 aa7.63□□□□□ -1.19
PSPC1-208ENST00000635562 POTEFA5A3E0 1075 aa7.62□□□□□ -1.19
PSPC1-208ENST00000635562 PYGBP11216 843 aa7.61□□□□□ -1.19
PSPC1-208ENST00000635562 ZNF467Q7Z7K2 595 aaPredicted RBP7.61□□□□□ -1.19
PSPC1-208ENST00000635562 PCDH10Q9P2E7 1040 aa7.61□□□□□ -1.19
PSPC1-208ENST00000635562 POTEMA6NI47 508 aa7.6□□□□□ -1.19
PSPC1-208ENST00000635562 PLCG2P16885 1265 aa7.6□□□□□ -1.19
PSPC1-208ENST00000635562 COLQQ9Y215 455 aaPredicted RBP7.6□□□□□ -1.19
PSPC1-208ENST00000635562 CHRM1P11229 460 aaPredicted RBP7.58□□□□□ -1.2
PSPC1-208ENST00000635562 POTEGQ6S5H5 508 aa7.58□□□□□ -1.2
PSPC1-208ENST00000635562 IRX5P78411 483 aaPredicted RBP7.55□□□□□ -1.2
PSPC1-208ENST00000635562 OCEL1Q9H607 264 aa7.55□□□□□ -1.2
PSPC1-208ENST00000635562 GOLGA2Q08379 1002 aa7.54□□□□□ -1.2
PSPC1-208ENST00000635562 SPOCK2Q92563 424 aa7.54□□□□□ -1.2
PSPC1-208ENST00000635562 PCDHB8Q9UN66 801 aa7.54□□□□□ -1.2
PSPC1-208ENST00000635562 PLSCR2Q9NRY7 297 aa7.53□□□□□ -1.2
PSPC1-208ENST00000635562 FAM163AQ96GL9 167 aaPredicted RBP7.51□□□□□ -1.21
PSPC1-208ENST00000635562 MKRN3Q13064 507 aaKnown RBP7.5□□□□□ -1.21
PSPC1-208ENST00000635562 SLAIN1Q8ND83 568 aa7.5□□□□□ -1.21
PSPC1-208ENST00000635562 TRIM41Q8WV44 630 aa7.5□□□□□ -1.21
PSPC1-208ENST00000635562 IFNLR1Q8IU57 520 aaPredicted RBP7.49□□□□□ -1.21
PSPC1-208ENST00000635562 PDAP1Q13442 181 aaKnown RBP7.48□□□□□ -1.21
PSPC1-208ENST00000635562 SNPHO15079 494 aa7.47□□□□□ -1.21
PSPC1-208ENST00000635562 PSEN1P49768 467 aa7.47□□□□□ -1.21
PSPC1-208ENST00000635562 LCE2DQ5TA82 110 aaPredicted RBP7.47□□□□□ -1.21
PSPC1-208ENST00000635562 L3MBTL3Q96JM7 780 aaPredicted RBP7.47□□□□□ -1.21
PSPC1-208ENST00000635562 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.47□□□□□ -1.21
PSPC1-208ENST00000635562 CIZ1Q9ULV3 898 aaPredicted RBP7.46□□□□□ -1.22
PSPC1-208ENST00000635562 C3orf67Q6ZVT6 689 aa7.44□□□□□ -1.22
PSPC1-208ENST00000635562 TMEM121BQ9BXQ6 578 aaPredicted RBP7.44□□□□□ -1.22
PSPC1-208ENST00000635562 PDCD7Q8N8D1 485 aaKnown RBP7.43□□□□□ -1.22
PSPC1-208ENST00000635562 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.42□□□□□ -1.222e-12■■□□□ 13
PSPC1-208ENST00000635562 ST18O60284 1047 aa7.4□□□□□ -1.22
PSPC1-208ENST00000635562 G3V3G9 751 aa7.39□□□□□ -1.23
PSPC1-208ENST00000635562 ILDR1Q86SU0 546 aaPredicted RBP7.39□□□□□ -1.23
PSPC1-208ENST00000635562 CABP2Q9NPB3 220 aa7.37□□□□□ -1.23
PSPC1-208ENST00000635562 CDAN1Q8IWY9 1227 aa7.35□□□□□ -1.23
PSPC1-208ENST00000635562 TAOK2Q9UL54 1235 aa7.33□□□□□ -1.24
PSPC1-208ENST00000635562 BOLA1Q9Y3E2 137 aa7.33□□□□□ -1.24
PSPC1-208ENST00000635562 RIOK3O14730 519 aaKnown RBP7.31□□□□□ -1.24
PSPC1-208ENST00000635562 VGFO15240 615 aaPredicted RBP7.29□□□□□ -1.24
PSPC1-208ENST00000635562 SOX12O15370 315 aa7.28□□□□□ -1.24
PSPC1-208ENST00000635562 EFCAB3Q8N7B9 438 aa7.27□□□□□ -1.25
PSPC1-208ENST00000635562 EMP3P54852 163 aa7.26□□□□□ -1.25
PSPC1-208ENST00000635562 DOK7Q18PE1 504 aa7.25□□□□□ -1.25
PSPC1-208ENST00000635562 DPY19L2Q6NUT2 758 aa7.25□□□□□ -1.25
PSPC1-208ENST00000635562 MARVELD3Q96A59 401 aa7.24□□□□□ -1.25
PSPC1-208ENST00000635562 RIMBP2O15034 1052 aa7.23□□□□□ -1.25
PSPC1-208ENST00000635562 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.22□□□□□ -1.25
PSPC1-208ENST00000635562 ZNF710Q8N1W2 664 aa7.22□□□□□ -1.25
PSPC1-208ENST00000635562 RNF25Q96BH1 459 aaPredicted RBP7.22□□□□□ -1.25
PSPC1-208ENST00000635562 ZFP91Q96JP5 570 aaPredicted RBP7.22□□□□□ -1.25
PSPC1-208ENST00000635562 MICALL2Q8IY33 904 aa7.2□□□□□ -1.26
PSPC1-208ENST00000635562 ZSWIM6Q9HCJ5 1215 aa7.19□□□□□ -1.26
PSPC1-208ENST00000635562 HOXB3P14651 431 aaPredicted RBP7.18□□□□□ -1.26
PSPC1-208ENST00000635562 HOXB1P14653 301 aaPredicted RBP7.18□□□□□ -1.26
PSPC1-208ENST00000635562 NLRP6P59044 892 aa7.18□□□□□ -1.26
PSPC1-208ENST00000635562 HS3ST6Q96QI5 342 aa7.18□□□□□ -1.26
PSPC1-208ENST00000635562 FAM205CA6NFA0 338 aa7.16□□□□□ -1.26
PSPC1-208ENST00000635562 SPNS2Q8IVW8 549 aa7.16□□□□□ -1.26
PSPC1-208ENST00000635562 MMRN1Q13201 1228 aa7.15□□□□□ -1.26
PSPC1-208ENST00000635562 BCL11BQ9C0K0 894 aaPredicted RBP7.15□□□□□ -1.26
PSPC1-208ENST00000635562 PHF8Q9UPP1 1060 aa7.15□□□□□ -1.26
PSPC1-208ENST00000635562 ECM2O94769 699 aaPredicted RBP7.14□□□□□ -1.27
PSPC1-208ENST00000635562 MS4A4AQ96JQ5 239 aa7.14□□□□□ -1.27
PSPC1-208ENST00000635562 ERBB3P21860 1342 aa7.13□□□□□ -1.27
PSPC1-208ENST00000635562 STK24Q9Y6E0 443 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms