RNA–Protein interactions for RNA: ENST00000623535.1

CDKL5-205, Transcript of cyclin dependent kinase like 5, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDKL5, Length 12,533 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5-205ENST00000623535 CSRNP3Q8WYN3 585 aa8.34□□□□□ -1.07
CDKL5-205ENST00000623535 ERCC6Q03468 1493 aa8.34□□□□□ -1.07
CDKL5-205ENST00000623535 MEX3CQ5U5Q3 659 aaKnown RBP8.34□□□□□ -1.07
CDKL5-205ENST00000623535 SENP3Q9H4L4 574 aaPredicted RBP8.32□□□□□ -1.08
CDKL5-205ENST00000623535 CNKSR2Q8WXI2 1034 aa8.32□□□□□ -1.08
CDKL5-205ENST00000623535 TRIM44Q96DX7 344 aaPredicted RBP8.31□□□□□ -1.08
CDKL5-205ENST00000623535 NCLP19338 710 aaKnown RBP8.31□□□□□ -1.08
CDKL5-205ENST00000623535 ACIN1Q9UKV3 1341 aaKnown RBP8.3□□□□□ -1.08
CDKL5-205ENST00000623535 L1TD1Q5T7N2 865 aaKnown RBP8.3□□□□□ -1.08
CDKL5-205ENST00000623535 DIEXFQ68CQ4 756 aaKnown RBP8.3□□□□□ -1.08
CDKL5-205ENST00000623535 CASC1Q6TDU7 716 aa8.3□□□□□ -1.08
CDKL5-205ENST00000623535 WDR43Q15061 677 aaKnown RBP eCLIP8.29□□□□□ -1.08
CDKL5-205ENST00000623535 PPARGC1BQ86YN6 1023 aaKnown RBP8.29□□□□□ -1.08
CDKL5-205ENST00000623535 CWC22Q9HCG8 908 aaKnown RBP8.29□□□□□ -1.08
CDKL5-205ENST00000623535 SF3B2Q13435 895 aaKnown RBP8.26□□□□□ -1.09
CDKL5-205ENST00000623535 WASHC2AQ641Q2 1341 aa8.26□□□□□ -1.09
CDKL5-205ENST00000623535 CFAP53Q96M91 514 aa8.26□□□□□ -1.09
CDKL5-205ENST00000623535 GOLGA6L6A8MZA4 724 aa8.24□□□□□ -1.09
CDKL5-205ENST00000623535 ANP32AP39687 249 aaKnown RBP8.24□□□□□ -1.09
CDKL5-205ENST00000623535 CDCA8Q53HL2 280 aa8.24□□□□□ -1.09
CDKL5-205ENST00000623535 CHAF1AQ13111 956 aaPredicted RBP8.24□□□□□ -1.09
CDKL5-205ENST00000623535 KIAA2012Q0VF49 1180 aa8.23□□□□□ -1.09
CDKL5-205ENST00000623535 TRIM26Q12899 539 aaPredicted RBP8.23□□□□□ -1.09
CDKL5-205ENST00000623535 NRDCO43847 1150 aa8.23□□□□□ -1.09
CDKL5-205ENST00000623535 CHMP4BQ9H444 224 aaKnown RBP8.23□□□□□ -1.09
CDKL5-205ENST00000623535 CHMP4AQ9BY43 222 aa8.23□□□□□ -1.09
CDKL5-205ENST00000623535 FGD1P98174 961 aa8.22□□□□□ -1.09
CDKL5-205ENST00000623535 PNNQ9H307 717 aaKnown RBP8.22□□□□□ -1.09
CDKL5-205ENST00000623535 POGKQ9P215 609 aa8.22□□□□□ -1.09
CDKL5-205ENST00000623535 KCNH8Q96L42 1107 aa8.21□□□□□ -1.09
CDKL5-205ENST00000623535 P3H3Q8IVL6 736 aa8.21□□□□□ -1.1
CDKL5-205ENST00000623535 OS9Q13438 667 aaPredicted RBP8.2□□□□□ -1.1
CDKL5-205ENST00000623535 CTDP1Q9Y5B0 961 aaPredicted RBP8.2□□□□□ -1.1
CDKL5-205ENST00000623535 PLEKHD1A6NEE1 506 aa8.2□□□□□ -1.1
CDKL5-205ENST00000623535 CSB-PGBD3P0DP91 1061 aa8.19□□□□□ -1.1
CDKL5-205ENST00000623535 HMGB2P26583 209 aaKnown RBP8.19□□□□□ -1.1
CDKL5-205ENST00000623535 KANK1Q14678 1352 aa8.18□□□□□ -1.1
CDKL5-205ENST00000623535 TMC1Q8TDI8 760 aa8.18□□□□□ -1.1
CDKL5-205ENST00000623535 MSH5O43196 834 aa8.18□□□□□ -1.1
CDKL5-205ENST00000623535 SRPK2P78362 688 aaKnown RBP8.18□□□□□ -1.1
CDKL5-205ENST00000623535 GOLGA6L22H0YM25 854 aa8.17□□□□□ -1.1
CDKL5-205ENST00000623535 MAP3K9P80192 1104 aa8.17□□□□□ -1.1
CDKL5-205ENST00000623535 KLHL34Q8N239 644 aa8.17□□□□□ -1.1
CDKL5-205ENST00000623535 NUDCQ9Y266 331 aa8.17□□□□□ -1.1
CDKL5-205ENST00000623535 TCEAL9Q9UHQ7 104 aa8.17□□□□□ -1.1
CDKL5-205ENST00000623535 GTF2E1P29083 439 aaPredicted RBP8.16□□□□□ -1.1
CDKL5-205ENST00000623535 TRIM34Q9BYJ4 488 aa8.16□□□□□ -1.1
CDKL5-205ENST00000623535 TONSLQ96HA7 1378 aa8.16□□□□□ -1.1
CDKL5-205ENST00000623535 PPP4R2Q9NY27 417 aa8.15□□□□□ -1.1
CDKL5-205ENST00000623535 MAPK8IP3Q9UPT6 1336 aa8.15□□□□□ -1.1
CDKL5-205ENST00000623535 EID1Q9Y6B2 187 aa8.15□□□□□ -1.1
CDKL5-205ENST00000623535 PPM1GO15355 546 aaPredicted RBP8.15□□□□□ -1.1
CDKL5-205ENST00000623535 KCNJ4P48050 445 aa8.14□□□□□ -1.11
CDKL5-205ENST00000623535 CCDC34Q96HJ3 373 aa8.14□□□□□ -1.11
CDKL5-205ENST00000623535 GNL2Q13823 731 aaKnown RBP8.13□□□□□ -1.11
CDKL5-205ENST00000623535 CEP89Q96ST8 783 aa8.12□□□□□ -1.11
CDKL5-205ENST00000623535 WDHD1O75717 1129 aaPredicted RBP8.12□□□□□ -1.11
CDKL5-205ENST00000623535 CCAR1Q8IX12 1150 aaKnown RBP8.12□□□□□ -1.11
CDKL5-205ENST00000623535 MLECQ14165 292 aa8.11□□□□□ -1.11
CDKL5-205ENST00000623535 HDAC5Q9UQL6 1122 aa8.11□□□□□ -1.11
CDKL5-205ENST00000623535 NAP1L2Q9ULW6 460 aaPredicted RBP8.11□□□□□ -1.11
CDKL5-205ENST00000623535 NOC3LQ8WTT2 800 aaKnown RBP8.1□□□□□ -1.11
CDKL5-205ENST00000623535 NOL10Q9BSC4 688 aaKnown RBP8.1□□□□□ -1.11
CDKL5-205ENST00000623535 RTF1Q92541 710 aaKnown RBP8.09□□□□□ -1.11
CDKL5-205ENST00000623535 DDRGK1Q96HY6 314 aa8.09□□□□□ -1.11
CDKL5-205ENST00000623535 FRAT2O75474 233 aaPredicted RBP8.09□□□□□ -1.11
CDKL5-205ENST00000623535 AMOTL1Q8IY63 956 aa8.09□□□□□ -1.11
CDKL5-205ENST00000623535 ZNF710Q8N1W2 664 aa8.09□□□□□ -1.11
CDKL5-205ENST00000623535 TAF7LQ5H9L4 462 aa8.08□□□□□ -1.12
CDKL5-205ENST00000623535 ZNF330Q9Y3S2 320 aaPredicted RBP8.08□□□□□ -1.12
CDKL5-205ENST00000623535 NEUROD2Q15784 382 aa8.08□□□□□ -1.12
CDKL5-205ENST00000623535 MTUS2Q5JR59 1369 aa8.08□□□□□ -1.12
CDKL5-205ENST00000623535 VPS53Q5VIR6 699 aa8.08□□□□□ -1.12
CDKL5-205ENST00000623535 PAK3O75914 559 aaPredicted RBP8.08□□□□□ -1.12
CDKL5-205ENST00000623535 WWC2Q6AWC2 1192 aa8.08□□□□□ -1.12
CDKL5-205ENST00000623535 EVA1CP58658 441 aa8.07□□□□□ -1.12
CDKL5-205ENST00000623535 GLIPR1L2Q4G1C9 344 aa8.07□□□□□ -1.12
CDKL5-205ENST00000623535 FTSJ3Q8IY81 847 aaKnown RBP8.07□□□□□ -1.12
CDKL5-205ENST00000623535 MS4A1P11836 297 aa8.07□□□□□ -1.12
CDKL5-205ENST00000623535 BECN1Q14457 450 aa8.06□□□□□ -1.12
CDKL5-205ENST00000623535 TAOK2Q9UL54 1235 aa8.06□□□□□ -1.12
CDKL5-205ENST00000623535 CFAP44Q96MT7 982 aa8.06□□□□□ -1.12
CDKL5-205ENST00000623535 KDM2AQ9Y2K7 1162 aa8.05□□□□□ -1.12
CDKL5-205ENST00000623535 GORABQ5T7V8 394 aa8.05□□□□□ -1.12
CDKL5-205ENST00000623535 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.05□□□□□ -1.12
CDKL5-205ENST00000623535 MARCH6O60337 910 aa8.04□□□□□ -1.12
CDKL5-205ENST00000623535 RSF1Q96T23 1441 aaPredicted RBP8.04□□□□□ -1.12
CDKL5-205ENST00000623535 KNSTRNQ9Y448 316 aa8.04□□□□□ -1.12
CDKL5-205ENST00000623535 GOLGA6L4A6NEF3 574 aa8.04□□□□□ -1.12
CDKL5-205ENST00000623535 MCCP23508 829 aa8.03□□□□□ -1.12
CDKL5-205ENST00000623535 R3HCC1Q9Y3T6 440 aaKnown RBP8.03□□□□□ -1.12
CDKL5-205ENST00000623535 USP35Q9P2H5 1018 aa8.03□□□□□ -1.12
CDKL5-205ENST00000623535 PTMAP06454 111 aaKnown RBP8.02□□□□□ -1.13
CDKL5-205ENST00000623535 GPATCH3Q96I76 525 aa8.01□□□□□ -1.13
CDKL5-205ENST00000623535 LAS1LQ9Y4W2 734 aaKnown RBP8.01□□□□□ -1.13
CDKL5-205ENST00000623535 TNNT2P45379 298 aaPredicted RBP8.01□□□□□ -1.13
CDKL5-205ENST00000623535 PAF1Q8N7H5 531 aa8□□□□□ -1.13
CDKL5-205ENST00000623535 CCDC43Q96MW1 224 aaKnown RBP8□□□□□ -1.13
CDKL5-205ENST00000623535 RASSF8Q8NHQ8 419 aa8□□□□□ -1.13
CDKL5-205ENST00000623535 CLIP1P30622 1438 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms