RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 CFAP44Q96MT7 982 aa11.52□□□□□ -0.57
CPNE3-213ENST00000622183 SPRYD3Q8NCJ5 442 aa11.51□□□□□ -0.57
CPNE3-213ENST00000622183 FAM212AQ96EL1 285 aa11.51□□□□□ -0.57
CPNE3-213ENST00000622183 PITPNM1O00562 1244 aa11.5□□□□□ -0.57
CPNE3-213ENST00000622183 HS6ST3Q8IZP7 471 aa11.5□□□□□ -0.57
CPNE3-213ENST00000622183 RIOK3O14730 519 aaKnown RBP11.46□□□□□ -0.57
CPNE3-213ENST00000622183 TAOK2Q9UL54 1235 aa11.46□□□□□ -0.57
CPNE3-213ENST00000622183 DNAJC5Q9H3Z4 198 aa11.45□□□□□ -0.58
CPNE3-213ENST00000622183 CHRM1P11229 460 aaPredicted RBP11.44□□□□□ -0.58
CPNE3-213ENST00000622183 RASEFQ8IZ41 740 aa11.44□□□□□ -0.58
CPNE3-213ENST00000622183 KDM2AQ9Y2K7 1162 aa11.43□□□□□ -0.58
CPNE3-213ENST00000622183 BCANQ96GW7 911 aa11.4□□□□□ -0.58
CPNE3-213ENST00000622183 TSHZ2Q9NRE2 1034 aa11.39□□□□□ -0.59
CPNE3-213ENST00000622183 VGFO15240 615 aaPredicted RBP11.37□□□□□ -0.59
CPNE3-213ENST00000622183 SGIP1Q9BQI5 828 aa11.33□□□□□ -0.6
CPNE3-213ENST00000622183 STK25O00506 426 aa11.32□□□□□ -0.6
CPNE3-213ENST00000622183 NKX1-1Q15270 411 aaPredicted RBP11.32□□□□□ -0.6
CPNE3-213ENST00000622183 PYGBP11216 843 aa11.3□□□□□ -0.6
CPNE3-213ENST00000622183 CHADLQ6NUI6 762 aa11.29□□□□□ -0.6
CPNE3-213ENST00000622183 FARP1Q9Y4F1 1045 aaPredicted RBP11.28□□□□□ -0.6
CPNE3-213ENST00000622183 GTPBP6O43824 516 aaPredicted RBP11.27□□□□□ -0.61
CPNE3-213ENST00000622183 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.26□□□□□ -0.61
CPNE3-213ENST00000622183 ZFP91Q96JP5 570 aaPredicted RBP11.26□□□□□ -0.61
CPNE3-213ENST00000622183 BCL11BQ9C0K0 894 aaPredicted RBP11.25□□□□□ -0.61
CPNE3-213ENST00000622183 STK24Q9Y6E0 443 aa11.23□□□□□ -0.61
CPNE3-213ENST00000622183 TSPYL2Q9H2G4 693 aaPredicted RBP11.22□□□□□ -0.61
CPNE3-213ENST00000622183 PRKAR2AP13861 404 aaKnown RBP11.2□□□□□ -0.62
CPNE3-213ENST00000622183 ZNF467Q7Z7K2 595 aaPredicted RBP11.2□□□□□ -0.62
CPNE3-213ENST00000622183 RYDENQ9NUL5 291 aaKnown RBP11.2□□□□□ -0.62
CPNE3-213ENST00000622183 FXR2P51116 673 aaKnown RBP eCLIP11.19□□□□□ -0.62
CPNE3-213ENST00000622183 CCDC61Q9Y6R9 512 aa11.15□□□□□ -0.62
CPNE3-213ENST00000622183 PDAP1Q13442 181 aaKnown RBP11.13□□□□□ -0.63
CPNE3-213ENST00000622183 CHRDL2Q6WN34 429 aa11.1□□□□□ -0.63
CPNE3-213ENST00000622183 ZNF579Q8NAF0 562 aaKnown RBP11.09□□□□□ -0.63
CPNE3-213ENST00000622183 PCDHB8Q9UN66 801 aa11.09□□□□□ -0.63
CPNE3-213ENST00000622183 PCDHB13Q9Y5F0 798 aa11.09□□□□□ -0.63
CPNE3-213ENST00000622183 PAK3O75914 559 aaPredicted RBP11.08□□□□□ -0.64
CPNE3-213ENST00000622183 PRKCSHP14314 528 aaPredicted RBP11.08□□□□□ -0.64
CPNE3-213ENST00000622183 PIP4P2Q8N4L2 257 aa11.07□□□□□ -0.64
CPNE3-213ENST00000622183 PSEN1P49768 467 aa11.05□□□□□ -0.64
CPNE3-213ENST00000622183 NBR1Q14596 966 aa11.05□□□□□ -0.64
CPNE3-213ENST00000622183 TPRNQ4KMQ1 711 aa11.01□□□□□ -0.65
CPNE3-213ENST00000622183 IFNL1Q8IU54 200 aa11.01□□□□□ -0.65
CPNE3-213ENST00000622183 KIF12Q96FN5 646 aa11.01□□□□□ -0.65
CPNE3-213ENST00000622183 MAP3K13O43283 966 aa10.99□□□□□ -0.65
CPNE3-213ENST00000622183 MFRPQ9BY79 579 aa10.97□□□□□ -0.65
CPNE3-213ENST00000622183 ZRANB1Q9UGI0 708 aa10.93□□□□□ -0.66
CPNE3-213ENST00000622183 CD44P16070 742 aaKnown RBP10.92□□□□□ -0.66
CPNE3-213ENST00000622183 CADPS2Q86UW7 1296 aa10.91□□□□□ -0.66
CPNE3-213ENST00000622183 SOX12O15370 315 aa10.9□□□□□ -0.66
CPNE3-213ENST00000622183 P3H3Q8IVL6 736 aa10.9□□□□□ -0.66
CPNE3-213ENST00000622183 EFCAB3Q8N7B9 438 aa10.9□□□□□ -0.66
CPNE3-213ENST00000622183 CABP2Q9NPB3 220 aa10.9□□□□□ -0.66
CPNE3-213ENST00000622183 NLRP6P59044 892 aa10.89□□□□□ -0.67
CPNE3-213ENST00000622183 FBXO22Q8NEZ5 403 aa10.89□□□□□ -0.67
CPNE3-213ENST00000622183 PHF12Q96QT6 1004 aa10.87□□□□□ -0.67
CPNE3-213ENST00000622183 WDR70Q9NW82 654 aa10.86□□□□□ -0.67
CPNE3-213ENST00000622183 PPP1R37O75864 691 aa10.84□□□□□ -0.67
CPNE3-213ENST00000622183 PHF8Q9UPP1 1060 aa10.84□□□□□ -0.67
CPNE3-213ENST00000622183 KCNV2Q8TDN2 545 aa10.81□□□□□ -0.68
CPNE3-213ENST00000622183 C19orf67A6NJJ6 358 aa10.79□□□□□ -0.68
CPNE3-213ENST00000622183 TMEM106CQ9BVX2 250 aa10.78□□□□□ -0.68
CPNE3-213ENST00000622183 MS4A3Q96HJ5 214 aa10.77□□□□□ -0.69
CPNE3-213ENST00000622183 MS4A4AQ96JQ5 239 aa10.76□□□□□ -0.69
CPNE3-213ENST00000622183 GOLGA2Q08379 1002 aa10.75□□□□□ -0.69
CPNE3-213ENST00000622183 TRPC6Q9Y210 931 aa10.73□□□□□ -0.69
CPNE3-213ENST00000622183 ARHGEF1Q92888 912 aaKnown RBP10.71□□□□□ -0.69
CPNE3-213ENST00000622183 TIE1P35590 1138 aa10.7□□□□□ -0.7
CPNE3-213ENST00000622183 MKRN3Q13064 507 aaKnown RBP10.7□□□□□ -0.7
CPNE3-213ENST00000622183 E2F4Q16254 413 aa10.7□□□□□ -0.7
CPNE3-213ENST00000622183 NCKAP5LQ9HCH0 1330 aa10.69□□□□□ -0.7
CPNE3-213ENST00000622183 TTLL13PA6NNM8 815 aa10.66□□□□□ -0.7
CPNE3-213ENST00000622183 PDE4AP27815 886 aa10.66□□□□□ -0.7
CPNE3-213ENST00000622183 CRISPLD2Q9H0B8 497 aa10.66□□□□□ -0.7
CPNE3-213ENST00000622183 MFSD10Q14728 455 aa10.65□□□□□ -0.7
CPNE3-213ENST00000622183 ILDR1Q86SU0 546 aaPredicted RBP10.65□□□□□ -0.7
CPNE3-213ENST00000622183 LARP6Q9BRS8 491 aaKnown RBP10.65□□□□□ -0.7
CPNE3-213ENST00000622183 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.64□□□□□ -0.71
CPNE3-213ENST00000622183 BMP2KQ9NSY1 1161 aaPredicted RBP10.63□□□□□ -0.71
CPNE3-213ENST00000622183 LMOD2Q6P5Q4 547 aa10.62□□□□□ -0.71
CPNE3-213ENST00000622183 TULP1O00294 542 aaPredicted RBP10.61□□□□□ -0.71
CPNE3-213ENST00000622183 CLCN6P51797 869 aa10.6□□□□□ -0.71
CPNE3-213ENST00000622183 DDX27Q96GQ7 796 aaKnown RBP10.6□□□□□ -0.71
CPNE3-213ENST00000622183 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.6□□□□□ -0.71
CPNE3-213ENST00000622183 GALR2O43603 387 aaPredicted RBP10.59□□□□□ -0.71
CPNE3-213ENST00000622183 TRIM35Q9UPQ4 493 aa10.59□□□□□ -0.71
CPNE3-213ENST00000622183 ARIH1Q9Y4X5 557 aaPredicted RBP10.59□□□□□ -0.71
CPNE3-213ENST00000622183 TESPA1A2RU30 521 aaPredicted RBP10.57□□□□□ -0.72
CPNE3-213ENST00000622183 HAX1O00165 279 aa10.56□□□□□ -0.72
CPNE3-213ENST00000622183 CAMK2BQ13554 666 aa10.56□□□□□ -0.72
CPNE3-213ENST00000622183 SEMA3EO15041 775 aa10.55□□□□□ -0.72
CPNE3-213ENST00000622183 GPHNQ9NQX3 736 aaPredicted RBP10.52□□□□□ -0.73
CPNE3-213ENST00000622183 EVX2Q03828 476 aa10.51□□□□□ -0.73
CPNE3-213ENST00000622183 PPP1R15BQ5SWA1 713 aa10.5□□□□□ -0.73
CPNE3-213ENST00000622183 DPY19L2Q6NUT2 758 aa10.5□□□□□ -0.73
CPNE3-213ENST00000622183 PDCD7Q8N8D1 485 aaKnown RBP10.49□□□□□ -0.73
CPNE3-213ENST00000622183 ATN1P54259 1190 aaPredicted RBP10.48□□□□□ -0.73
CPNE3-213ENST00000622183 IER5LQ5T953 404 aa10.48□□□□□ -0.73
CPNE3-213ENST00000622183 SMYD5Q6GMV2 418 aa10.48□□□□□ -0.73
CPNE3-213ENST00000622183 MICALL2Q8IY33 904 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms