RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 CCDC61Q9Y6R9 512 aa13.89□□□□□ -0.19
BRCA1-229ENST00000621897 SPOCK2Q92563 424 aa13.86□□□□□ -0.19
BRCA1-229ENST00000621897 FAM212AQ96EL1 285 aa13.84□□□□□ -0.19
BRCA1-229ENST00000621897 DCAF8Q5TAQ9 597 aa13.8□□□□□ -0.2
BRCA1-229ENST00000621897 GALR2O43603 387 aaPredicted RBP13.78□□□□□ -0.2
BRCA1-229ENST00000621897 KIF12Q96FN5 646 aa13.76□□□□□ -0.21
BRCA1-229ENST00000621897 CLCN6P51797 869 aa13.74□□□□□ -0.21
BRCA1-229ENST00000621897 MS4A3Q96HJ5 214 aa13.74□□□□□ -0.21
BRCA1-229ENST00000621897 MAP3K13O43283 966 aa13.72□□□□□ -0.21
BRCA1-229ENST00000621897 GSE1Q14687 1217 aa13.71□□□□□ -0.21
BRCA1-229ENST00000621897 PYGBP11216 843 aa13.7□□□□□ -0.22
BRCA1-229ENST00000621897 CIZ1Q9ULV3 898 aaPredicted RBP13.69□□□□□ -0.22
BRCA1-229ENST00000621897 POTEIP0CG38 1075 aa13.65□□□□□ -0.22
BRCA1-229ENST00000621897 PCDHB13Q9Y5F0 798 aa13.63□□□□□ -0.23
BRCA1-229ENST00000621897 TRPC6Q9Y210 931 aa13.62□□□□□ -0.23
BRCA1-229ENST00000621897 IFNL1Q8IU54 200 aa13.6□□□□□ -0.23
BRCA1-229ENST00000621897 DCBLD2Q96PD2 775 aa13.59□□□□□ -0.23
BRCA1-229ENST00000621897 SGIP1Q9BQI5 828 aa13.59□□□□□ -0.23
BRCA1-229ENST00000621897 CHRM1P11229 460 aaPredicted RBP13.56□□□□□ -0.24
BRCA1-229ENST00000621897 PCDHB8Q9UN66 801 aa13.55□□□□□ -0.24
BRCA1-229ENST00000621897 BMP2KQ9NSY1 1161 aaPredicted RBP13.5□□□□□ -0.25
BRCA1-229ENST00000621897 ATMINO43313 823 aaPredicted RBP13.49□□□□□ -0.25
BRCA1-229ENST00000621897 ASTLQ6HA08 431 aaPredicted RBP13.49□□□□□ -0.25
BRCA1-229ENST00000621897 PKD2Q13563 968 aa13.48□□□□□ -0.25
BRCA1-229ENST00000621897 PELP1Q8IZL8 1130 aaKnown RBP13.48□□□□□ -0.25
BRCA1-229ENST00000621897 TRIM41Q8WV44 630 aa13.48□□□□□ -0.25
BRCA1-229ENST00000621897 TIE1P35590 1138 aa13.47□□□□□ -0.25
BRCA1-229ENST00000621897 ATN1P54259 1190 aaPredicted RBP13.46□□□□□ -0.25
BRCA1-229ENST00000621897 ZNF467Q7Z7K2 595 aaPredicted RBP13.45□□□□□ -0.26
BRCA1-229ENST00000621897 TTLL13PA6NNM8 815 aa13.44□□□□□ -0.26
BRCA1-229ENST00000621897 RNF25Q96BH1 459 aaPredicted RBP13.44□□□□□ -0.26
BRCA1-229ENST00000621897 ECM2O94769 699 aaPredicted RBP13.4□□□□□ -0.26
BRCA1-229ENST00000621897 TMEM106CQ9BVX2 250 aa13.4□□□□□ -0.26
BRCA1-229ENST00000621897 PSEN1P49768 467 aa13.36□□□□□ -0.27
BRCA1-229ENST00000621897 TRIM35Q9UPQ4 493 aa13.35□□□□□ -0.27
BRCA1-229ENST00000621897 RIOK3O14730 519 aaKnown RBP13.33□□□□□ -0.28
BRCA1-229ENST00000621897 PDAP1Q13442 181 aaKnown RBP13.33□□□□□ -0.28
BRCA1-229ENST00000621897 RGL2O15211 777 aa13.32□□□□□ -0.28
BRCA1-229ENST00000621897 SLC39A7Q92504 469 aa13.3□□□□□ -0.28
BRCA1-229ENST00000621897 METRNQ9UJH8 293 aa13.3□□□□□ -0.28
BRCA1-229ENST00000621897 C7P10643 843 aa13.26□□□□□ -0.29
BRCA1-229ENST00000621897 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.25□□□□□ -0.29
BRCA1-229ENST00000621897 POTEFA5A3E0 1075 aa13.25□□□□□ -0.29
BRCA1-229ENST00000621897 VGFO15240 615 aaPredicted RBP13.25□□□□□ -0.29
BRCA1-229ENST00000621897 ZFP91Q96JP5 570 aaPredicted RBP13.25□□□□□ -0.29
BRCA1-229ENST00000621897 POTEB2H3BUK9 544 aa13.22□□□□□ -0.29
BRCA1-229ENST00000621897 COLQQ9Y215 455 aaPredicted RBP13.22□□□□□ -0.29
BRCA1-229ENST00000621897 IER5LQ5T953 404 aa13.21□□□□□ -0.29
BRCA1-229ENST00000621897 LHX8Q68G74 356 aa13.21□□□□□ -0.29
BRCA1-229ENST00000621897 CABP2Q9NPB3 220 aa13.2□□□□□ -0.3
BRCA1-229ENST00000621897 IRX5P78411 483 aaPredicted RBP13.16□□□□□ -0.3
BRCA1-229ENST00000621897 GOLGA2Q08379 1002 aa13.16□□□□□ -0.3
BRCA1-229ENST00000621897 SEC24BO95487 1268 aa13.15□□□□□ -0.3
BRCA1-229ENST00000621897 RTN4Q9NQC3 1192 aaKnown RBP13.14□□□□□ -0.31
BRCA1-229ENST00000621897 POTEJP0CG39 1038 aa13.13□□□□□ -0.31
BRCA1-229ENST00000621897 MKRN3Q13064 507 aaKnown RBP13.13□□□□□ -0.31
BRCA1-229ENST00000621897 BCL11BQ9C0K0 894 aaPredicted RBP13.13□□□□□ -0.31
BRCA1-229ENST00000621897 TAOK2Q9UL54 1235 aa13.13□□□□□ -0.31
BRCA1-229ENST00000621897 EFCAB3Q8N7B9 438 aa13.12□□□□□ -0.31
BRCA1-229ENST00000621897 STK25O00506 426 aa13.11□□□□□ -0.31
BRCA1-229ENST00000621897 AMER1Q5JTC6 1135 aaPredicted RBP13.1□□□□□ -0.31
BRCA1-229ENST00000621897 STK24Q9Y6E0 443 aa13.1□□□□□ -0.31
BRCA1-229ENST00000621897 PLCG2P16885 1265 aa13.09□□□□□ -0.31
BRCA1-229ENST00000621897 OCEL1Q9H607 264 aa13.09□□□□□ -0.31
BRCA1-229ENST00000621897 PDCD7Q8N8D1 485 aaKnown RBP13.07□□□□□ -0.32
BRCA1-229ENST00000621897 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.07□□□□□ -0.32
BRCA1-229ENST00000621897 ILDR1Q86SU0 546 aaPredicted RBP13.06□□□□□ -0.32
BRCA1-229ENST00000621897 OTUD5Q96G74 571 aa13.02□□□□□ -0.33
BRCA1-229ENST00000621897 DPY19L2Q6NUT2 758 aa13.01□□□□□ -0.33
BRCA1-229ENST00000621897 CHGAP10645 457 aaKnown RBP13□□□□□ -0.33
BRCA1-229ENST00000621897 HS6ST3Q8IZP7 471 aa13□□□□□ -0.33
BRCA1-229ENST00000621897 PHF8Q9UPP1 1060 aa12.99□□□□□ -0.33
BRCA1-229ENST00000621897 SOX12O15370 315 aa12.98□□□□□ -0.33
BRCA1-229ENST00000621897 DCAF8L2P0C7V8 631 aa12.98□□□□□ -0.33
BRCA1-229ENST00000621897 MS4A4AQ96JQ5 239 aa12.96□□□□□ -0.33
BRCA1-229ENST00000621897 MFRPQ9BY79 579 aa12.95□□□□□ -0.34
BRCA1-229ENST00000621897 FBXO22Q8NEZ5 403 aa12.93□□□□□ -0.34
BRCA1-229ENST00000621897 MAMSTRQ6ZN01 415 aa12.91□□□□□ -0.34
BRCA1-229ENST00000621897 SCUBE2Q9NQ36 999 aa12.91□□□□□ -0.34
BRCA1-229ENST00000621897 NLRP6P59044 892 aa12.89□□□□□ -0.35
BRCA1-229ENST00000621897 NKX1-1Q15270 411 aaPredicted RBP12.87□□□□□ -0.35
BRCA1-229ENST00000621897 L3MBTL3Q96JM7 780 aaPredicted RBP12.87□□□□□ -0.35
BRCA1-229ENST00000621897 DNAJC5Q9H3Z4 198 aa12.86□□□□□ -0.35
BRCA1-229ENST00000621897 BOLA1Q9Y3E2 137 aa12.85□□□□□ -0.35
BRCA1-229ENST00000621897 MICALL2Q8IY33 904 aa12.8□□□□□ -0.36
BRCA1-229ENST00000621897 TMEM121BQ9BXQ6 578 aaPredicted RBP12.8□□□□□ -0.36
BRCA1-229ENST00000621897 C3orf67Q6ZVT6 689 aa12.79□□□□□ -0.36
BRCA1-229ENST00000621897 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.79□□□□□ -0.36
BRCA1-229ENST00000621897 G3V3G9 751 aa12.78□□□□□ -0.36
BRCA1-229ENST00000621897 PPP1R37O75864 691 aa12.78□□□□□ -0.36
BRCA1-229ENST00000621897 SLAIN1Q8ND83 568 aa12.78□□□□□ -0.36
BRCA1-229ENST00000621897 GTPBP6O43824 516 aaPredicted RBP12.7□□□□□ -0.38
BRCA1-229ENST00000621897 TMEM92Q6UXU6 159 aa12.7□□□□□ -0.38
BRCA1-229ENST00000621897 BBXQ8WY36 941 aaPredicted RBP12.66□□□□□ -0.38
BRCA1-229ENST00000621897 RYDENQ9NUL5 291 aaKnown RBP12.62□□□□□ -0.39
BRCA1-229ENST00000621897 LCE2DQ5TA82 110 aaPredicted RBP12.6□□□□□ -0.39
BRCA1-229ENST00000621897 FAM163AQ96GL9 167 aaPredicted RBP12.58□□□□□ -0.4
BRCA1-229ENST00000621897 C2orf72A6NCS6 295 aa12.55□□□□□ -0.4
BRCA1-229ENST00000621897 KIF3CO14782 793 aa12.55□□□□□ -0.4
BRCA1-229ENST00000621897 HOXB3P14651 431 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms