RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 IFNLR1Q8IU57 520 aaPredicted RBP16.22■□□□□ 0.19
VPS29-212ENST00000621131 KLHL34Q8N239 644 aa16.22■□□□□ 0.19
VPS29-212ENST00000621131 GALR2O43603 387 aaPredicted RBP16.14■□□□□ 0.17
VPS29-212ENST00000621131 FAM212AQ96EL1 285 aa16.11■□□□□ 0.17
VPS29-212ENST00000621131 KIF12Q96FN5 646 aa16.1■□□□□ 0.17
VPS29-212ENST00000621131 DCAF8Q5TAQ9 597 aa16.08■□□□□ 0.16
VPS29-212ENST00000621131 POTEIP0CG38 1075 aa16.07■□□□□ 0.16
VPS29-212ENST00000621131 SPOCK2Q92563 424 aa16.06■□□□□ 0.16
VPS29-212ENST00000621131 MS4A3Q96HJ5 214 aa16.05■□□□□ 0.16
VPS29-212ENST00000621131 MAP3K13O43283 966 aa16.02■□□□□ 0.16
VPS29-212ENST00000621131 DCBLD2Q96PD2 775 aa16■□□□□ 0.15
VPS29-212ENST00000621131 GSE1Q14687 1217 aa15.97■□□□□ 0.15
VPS29-212ENST00000621131 SGIP1Q9BQI5 828 aa15.94■□□□□ 0.14
VPS29-212ENST00000621131 PYGBP11216 843 aa15.92■□□□□ 0.14
VPS29-212ENST00000621131 PCDHB13Q9Y5F0 798 aa15.9■□□□□ 0.14
VPS29-212ENST00000621131 TRPC6Q9Y210 931 aa15.89■□□□□ 0.13
VPS29-212ENST00000621131 CHRM1P11229 460 aaPredicted RBP15.85■□□□□ 0.13
VPS29-212ENST00000621131 ASTLQ6HA08 431 aaPredicted RBP15.85■□□□□ 0.13
VPS29-212ENST00000621131 IFNL1Q8IU54 200 aa15.85■□□□□ 0.13
VPS29-212ENST00000621131 CIZ1Q9ULV3 898 aaPredicted RBP15.85■□□□□ 0.13
VPS29-212ENST00000621131 ATMINO43313 823 aaPredicted RBP15.84■□□□□ 0.13
VPS29-212ENST00000621131 PELP1Q8IZL8 1130 aaKnown RBP15.82■□□□□ 0.12
VPS29-212ENST00000621131 TIE1P35590 1138 aa15.8■□□□□ 0.12
VPS29-212ENST00000621131 BMP2KQ9NSY1 1161 aaPredicted RBP15.8■□□□□ 0.12
VPS29-212ENST00000621131 ATN1P54259 1190 aaPredicted RBP15.77■□□□□ 0.12
VPS29-212ENST00000621131 PCDHB8Q9UN66 801 aa15.75■□□□□ 0.11
VPS29-212ENST00000621131 TTLL13PA6NNM8 815 aa15.73■□□□□ 0.11
VPS29-212ENST00000621131 ZNF467Q7Z7K2 595 aaPredicted RBP15.68■□□□□ 0.1
VPS29-212ENST00000621131 TRIM41Q8WV44 630 aa15.68■□□□□ 0.1
VPS29-212ENST00000621131 LHX8Q68G74 356 aa15.67■□□□□ 0.1
VPS29-212ENST00000621131 SLC39A7Q92504 469 aa15.65■□□□□ 0.1
VPS29-212ENST00000621131 TMEM106CQ9BVX2 250 aa15.65■□□□□ 0.1
VPS29-212ENST00000621131 C7P10643 843 aa15.64■□□□□ 0.09
VPS29-212ENST00000621131 METRNQ9UJH8 293 aa15.61■□□□□ 0.09
VPS29-212ENST00000621131 TRIM35Q9UPQ4 493 aa15.61■□□□□ 0.09
VPS29-212ENST00000621131 POTEB2H3BUK9 544 aa15.56■□□□□ 0.08
VPS29-212ENST00000621131 PSEN1P49768 467 aa15.55■□□□□ 0.08
VPS29-212ENST00000621131 POTEFA5A3E0 1075 aa15.53■□□□□ 0.08
VPS29-212ENST00000621131 PDAP1Q13442 181 aaKnown RBP15.53■□□□□ 0.08
VPS29-212ENST00000621131 PKD2Q13563 968 aa15.52■□□□□ 0.08
VPS29-212ENST00000621131 IER5LQ5T953 404 aa15.51■□□□□ 0.07
VPS29-212ENST00000621131 RNF25Q96BH1 459 aaPredicted RBP15.51■□□□□ 0.07
VPS29-212ENST00000621131 COLQQ9Y215 455 aaPredicted RBP15.47■□□□□ 0.07
VPS29-212ENST00000621131 RIOK3O14730 519 aaKnown RBP15.45■□□□□ 0.06
VPS29-212ENST00000621131 ECM2O94769 699 aaPredicted RBP15.45■□□□□ 0.06
VPS29-212ENST00000621131 POTEJP0CG39 1038 aa15.44■□□□□ 0.06
VPS29-212ENST00000621131 SEC24BO95487 1268 aa15.42■□□□□ 0.06
VPS29-212ENST00000621131 IRX5P78411 483 aaPredicted RBP15.41■□□□□ 0.06
VPS29-212ENST00000621131 VGFO15240 615 aaPredicted RBP15.37■□□□□ 0.05
VPS29-212ENST00000621131 OTUD5Q96G74 571 aa15.37■□□□□ 0.05
VPS29-212ENST00000621131 GOLGA2Q08379 1002 aa15.35■□□□□ 0.05
VPS29-212ENST00000621131 OCEL1Q9H607 264 aa15.35■□□□□ 0.05
VPS29-212ENST00000621131 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.34■□□□□ 0.05
VPS29-212ENST00000621131 RGL2O15211 777 aa15.34■□□□□ 0.05
VPS29-212ENST00000621131 MKRN3Q13064 507 aaKnown RBP15.34■□□□□ 0.05
VPS29-212ENST00000621131 ZFP91Q96JP5 570 aaPredicted RBP15.34■□□□□ 0.05
VPS29-212ENST00000621131 CABP2Q9NPB3 220 aa15.34■□□□□ 0.05
VPS29-212ENST00000621131 PLCG2P16885 1265 aa15.33■□□□□ 0.04
VPS29-212ENST00000621131 ILDR1Q86SU0 546 aaPredicted RBP15.27■□□□□ 0.04
VPS29-212ENST00000621131 PDCD7Q8N8D1 485 aaKnown RBP15.27■□□□□ 0.04
VPS29-212ENST00000621131 TAOK2Q9UL54 1235 aa15.27■□□□□ 0.04
VPS29-212ENST00000621131 MAMSTRQ6ZN01 415 aa15.26■□□□□ 0.03
VPS29-212ENST00000621131 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.25■□□□□ 0.03
VPS29-212ENST00000621131 EFCAB3Q8N7B9 438 aa15.24■□□□□ 0.03
VPS29-212ENST00000621131 BCL11BQ9C0K0 894 aaPredicted RBP15.19■□□□□ 0.02
VPS29-212ENST00000621131 SCUBE2Q9NQ36 999 aa15.19■□□□□ 0.02
VPS29-212ENST00000621131 STK25O00506 426 aa15.15■□□□□ 0.02
VPS29-212ENST00000621131 DPY19L2Q6NUT2 758 aa15.15■□□□□ 0.02
VPS29-212ENST00000621131 STK24Q9Y6E0 443 aa15.15■□□□□ 0.02
VPS29-212ENST00000621131 SOX12O15370 315 aa15.14■□□□□ 0.01
VPS29-212ENST00000621131 L3MBTL3Q96JM7 780 aaPredicted RBP15.11■□□□□ 0.01
VPS29-212ENST00000621131 PHF8Q9UPP1 1060 aa15.07■□□□□ 0
VPS29-212ENST00000621131 MS4A4AQ96JQ5 239 aa15.05■□□□□ -0
VPS29-212ENST00000621131 NLRP6P59044 892 aa15.01□□□□□ -0.01
VPS29-212ENST00000621131 SLAIN1Q8ND83 568 aa15.01□□□□□ -0.01
VPS29-212ENST00000621131 FBXO22Q8NEZ5 403 aa15.01□□□□□ -0.01
VPS29-212ENST00000621131 MFRPQ9BY79 579 aa15.01□□□□□ -0.01
VPS29-212ENST00000621131 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.01□□□□□ -0.01
VPS29-212ENST00000621131 BOLA1Q9Y3E2 137 aa15.01□□□□□ -0.01
VPS29-212ENST00000621131 HS6ST3Q8IZP7 471 aa15□□□□□ -0.01
VPS29-212ENST00000621131 TMEM121BQ9BXQ6 578 aaPredicted RBP14.98□□□□□ -0.01
VPS29-212ENST00000621131 CHGAP10645 457 aaKnown RBP14.97□□□□□ -0.01
VPS29-212ENST00000621131 C3orf67Q6ZVT6 689 aa14.95□□□□□ -0.02
VPS29-212ENST00000621131 G3V3G9 751 aa14.93□□□□□ -0.02
VPS29-212ENST00000621131 AMER1Q5JTC6 1135 aaPredicted RBP14.9□□□□□ -0.02
VPS29-212ENST00000621131 MICALL2Q8IY33 904 aa14.9□□□□□ -0.02
VPS29-212ENST00000621131 DNAJC5Q9H3Z4 198 aa14.9□□□□□ -0.02
VPS29-212ENST00000621131 RTN4Q9NQC3 1192 aaKnown RBP14.87□□□□□ -0.03
VPS29-212ENST00000621131 FAM163AQ96GL9 167 aaPredicted RBP14.86□□□□□ -0.03
VPS29-212ENST00000621131 LCE2DQ5TA82 110 aaPredicted RBP14.84□□□□□ -0.03
VPS29-212ENST00000621131 NKX1-1Q15270 411 aaPredicted RBP14.83□□□□□ -0.04
VPS29-212ENST00000621131 PLSCR2Q9NRY7 297 aa14.81□□□□□ -0.04
VPS29-212ENST00000621131 PPP1R37O75864 691 aa14.8□□□□□ -0.04
VPS29-212ENST00000621131 DCAF8L2P0C7V8 631 aa14.8□□□□□ -0.04
VPS29-212ENST00000621131 TMEM92Q6UXU6 159 aa14.79□□□□□ -0.04
VPS29-212ENST00000621131 SNPHO15079 494 aa14.75□□□□□ -0.05
VPS29-212ENST00000621131 ST18O60284 1047 aa14.72□□□□□ -0.05
VPS29-212ENST00000621131 POTEMA6NI47 508 aa14.68□□□□□ -0.06
VPS29-212ENST00000621131 POTEGQ6S5H5 508 aa14.67□□□□□ -0.06
VPS29-212ENST00000621131 GTPBP6O43824 516 aaPredicted RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms