RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PLCD3Q8N3E9 789 aa13.11□□□□□ -0.31
LINC00540-201ENST00000611481 ATMINO43313 823 aaPredicted RBP13.08□□□□□ -0.32
LINC00540-201ENST00000611481 KIF12Q96FN5 646 aa13.08□□□□□ -0.32
LINC00540-201ENST00000611481 FKBP8Q14318 412 aa13.06□□□□□ -0.32
LINC00540-201ENST00000611481 RASEFQ8IZ41 740 aa13.06□□□□□ -0.32
LINC00540-201ENST00000611481 POTEB2H3BUK9 544 aa13.05□□□□□ -0.32
LINC00540-201ENST00000611481 C7P10643 843 aa13.04□□□□□ -0.32
LINC00540-201ENST00000611481 SLC39A7Q92504 469 aa13.04□□□□□ -0.32
LINC00540-201ENST00000611481 ZBTB47Q9UFB7 747 aaPredicted RBP13.04□□□□□ -0.32
LINC00540-201ENST00000611481 OTUD5Q96G74 571 aa13.03□□□□□ -0.32
LINC00540-201ENST00000611481 METRNQ9UJH8 293 aa13.03□□□□□ -0.32
LINC00540-201ENST00000611481 MAP3K13O43283 966 aa12.99□□□□□ -0.33
LINC00540-201ENST00000611481 ATN1P54259 1190 aaPredicted RBP12.96□□□□□ -0.33
LINC00540-201ENST00000611481 BMP2KQ9NSY1 1161 aaPredicted RBP12.94□□□□□ -0.34
LINC00540-201ENST00000611481 TIE1P35590 1138 aa12.93□□□□□ -0.34
LINC00540-201ENST00000611481 NUBP1P53384 320 aa12.93□□□□□ -0.34
LINC00540-201ENST00000611481 TRPC6Q9Y210 931 aa12.92□□□□□ -0.34
LINC00540-201ENST00000611481 SGIP1Q9BQI5 828 aa12.9□□□□□ -0.34
LINC00540-201ENST00000611481 MAMSTRQ6ZN01 415 aa12.89□□□□□ -0.35
LINC00540-201ENST00000611481 FAM212AQ96EL1 285 aa12.88□□□□□ -0.35
LINC00540-201ENST00000611481 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
LINC00540-201ENST00000611481 PCDHB13Q9Y5F0 798 aa12.87□□□□□ -0.35
LINC00540-201ENST00000611481 POTEJP0CG39 1038 aa12.85□□□□□ -0.35
LINC00540-201ENST00000611481 TTLL13PA6NNM8 815 aa12.84□□□□□ -0.35
LINC00540-201ENST00000611481 PLSCR2Q9NRY7 297 aa12.81□□□□□ -0.36
LINC00540-201ENST00000611481 SCUBE2Q9NQ36 999 aa12.8□□□□□ -0.36
LINC00540-201ENST00000611481 POTEFA5A3E0 1075 aa12.78□□□□□ -0.36
LINC00540-201ENST00000611481 SEC24BO95487 1268 aa12.77□□□□□ -0.37
LINC00540-201ENST00000611481 IFNL1Q8IU54 200 aa12.77□□□□□ -0.37
LINC00540-201ENST00000611481 TRIM35Q9UPQ4 493 aa12.76□□□□□ -0.37
LINC00540-201ENST00000611481 IER5LQ5T953 404 aa12.75□□□□□ -0.37
LINC00540-201ENST00000611481 DCAF8Q5TAQ9 597 aa12.75□□□□□ -0.37
LINC00540-201ENST00000611481 COLQQ9Y215 455 aaPredicted RBP12.73□□□□□ -0.37
LINC00540-201ENST00000611481 POTEMA6NI47 508 aa12.71□□□□□ -0.37
LINC00540-201ENST00000611481 TMEM106CQ9BVX2 250 aa12.71□□□□□ -0.37
LINC00540-201ENST00000611481 POTEGQ6S5H5 508 aa12.69□□□□□ -0.38
LINC00540-201ENST00000611481 VASPP50552 380 aaPredicted RBP12.68□□□□□ -0.38
LINC00540-201ENST00000611481 PYGBP11216 843 aa12.67□□□□□ -0.38
LINC00540-201ENST00000611481 KLHL34Q8N239 644 aa12.67□□□□□ -0.38
LINC00540-201ENST00000611481 FAM163AQ96GL9 167 aaPredicted RBP12.62□□□□□ -0.39
LINC00540-201ENST00000611481 PLCG2P16885 1265 aa12.61□□□□□ -0.39
LINC00540-201ENST00000611481 GSE1Q14687 1217 aa12.61□□□□□ -0.39
LINC00540-201ENST00000611481 PCDHB8Q9UN66 801 aa12.59□□□□□ -0.39
LINC00540-201ENST00000611481 IRX5P78411 483 aaPredicted RBP12.56□□□□□ -0.4
LINC00540-201ENST00000611481 LCE2DQ5TA82 110 aaPredicted RBP12.56□□□□□ -0.4
LINC00540-201ENST00000611481 PCDH10Q9P2E7 1040 aa12.56□□□□□ -0.4
LINC00540-201ENST00000611481 ZNF467Q7Z7K2 595 aaPredicted RBP12.53□□□□□ -0.4
LINC00540-201ENST00000611481 OCEL1Q9H607 264 aa12.53□□□□□ -0.4
LINC00540-201ENST00000611481 CHRM1P11229 460 aaPredicted RBP12.51□□□□□ -0.41
LINC00540-201ENST00000611481 SLAIN1Q8ND83 568 aa12.5□□□□□ -0.41
LINC00540-201ENST00000611481 SPOCK2Q92563 424 aa12.45□□□□□ -0.42
LINC00540-201ENST00000611481 GOLGA2Q08379 1002 aa12.43□□□□□ -0.42
LINC00540-201ENST00000611481 IFNLR1Q8IU57 520 aaPredicted RBP12.42□□□□□ -0.42
LINC00540-201ENST00000611481 MKRN3Q13064 507 aaKnown RBP12.41□□□□□ -0.42
LINC00540-201ENST00000611481 PSEN1P49768 467 aa12.4□□□□□ -0.42
LINC00540-201ENST00000611481 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.39□□□□□ -0.43
LINC00540-201ENST00000611481 CIZ1Q9ULV3 898 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-201ENST00000611481 PDCD7Q8N8D1 485 aaKnown RBP12.36□□□□□ -0.43
LINC00540-201ENST00000611481 ST18O60284 1047 aa12.35□□□□□ -0.43
LINC00540-201ENST00000611481 PDAP1Q13442 181 aaKnown RBP12.35□□□□□ -0.43
LINC00540-201ENST00000611481 L3MBTL3Q96JM7 780 aaPredicted RBP12.33□□□□□ -0.44
LINC00540-201ENST00000611481 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.33□□□□□ -0.44
LINC00540-201ENST00000611481 SNPHO15079 494 aa12.32□□□□□ -0.44
LINC00540-201ENST00000611481 C3orf67Q6ZVT6 689 aa12.3□□□□□ -0.44
LINC00540-201ENST00000611481 CDAN1Q8IWY9 1227 aa12.29□□□□□ -0.44
LINC00540-201ENST00000611481 TMEM121BQ9BXQ6 578 aaPredicted RBP12.26□□□□□ -0.45
LINC00540-201ENST00000611481 ILDR1Q86SU0 546 aaPredicted RBP12.24□□□□□ -0.45
LINC00540-201ENST00000611481 TRIM41Q8WV44 630 aa12.24□□□□□ -0.45
LINC00540-201ENST00000611481 CABP2Q9NPB3 220 aa12.24□□□□□ -0.45
LINC00540-201ENST00000611481 G3V3G9 751 aa12.17□□□□□ -0.46
LINC00540-201ENST00000611481 DPY19L2Q6NUT2 758 aa12.17□□□□□ -0.46
LINC00540-201ENST00000611481 MARVELD3Q96A59 401 aa12.14□□□□□ -0.47
LINC00540-201ENST00000611481 BOLA1Q9Y3E2 137 aa12.14□□□□□ -0.47
LINC00540-201ENST00000611481 EFCAB3Q8N7B9 438 aa12.09□□□□□ -0.47
LINC00540-201ENST00000611481 EMP3P54852 163 aa12.07□□□□□ -0.48
LINC00540-201ENST00000611481 RIOK3O14730 519 aaKnown RBP12.06□□□□□ -0.48
LINC00540-201ENST00000611481 VGFO15240 615 aaPredicted RBP12.01□□□□□ -0.49
LINC00540-201ENST00000611481 RNF25Q96BH1 459 aaPredicted RBP12.01□□□□□ -0.49
LINC00540-201ENST00000611481 SOX12O15370 315 aa12□□□□□ -0.49
LINC00540-201ENST00000611481 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-201ENST00000611481 SPNS2Q8IVW8 549 aa11.99□□□□□ -0.49
LINC00540-201ENST00000611481 ZFP91Q96JP5 570 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-201ENST00000611481 FAM205CA6NFA0 338 aa11.98□□□□□ -0.49
LINC00540-201ENST00000611481 HOXB3P14651 431 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-201ENST00000611481 HS3ST6Q96QI5 342 aa11.97□□□□□ -0.49
LINC00540-201ENST00000611481 MMRN1Q13201 1228 aa11.96□□□□□ -0.49
LINC00540-201ENST00000611481 DOK7Q18PE1 504 aa11.96□□□□□ -0.49
LINC00540-201ENST00000611481 ZNF710Q8N1W2 664 aa11.96□□□□□ -0.49
LINC00540-201ENST00000611481 POTEB3A0JP26 581 aa11.94□□□□□ -0.5
LINC00540-201ENST00000611481 POTEBQ6S5H4 581 aa11.94□□□□□ -0.5
LINC00540-201ENST00000611481 MICALL2Q8IY33 904 aa11.94□□□□□ -0.5
LINC00540-201ENST00000611481 TAOK2Q9UL54 1235 aa11.93□□□□□ -0.5
LINC00540-201ENST00000611481 HOXB1P14653 301 aaPredicted RBP11.91□□□□□ -0.5
LINC00540-201ENST00000611481 MS4A4AQ96JQ5 239 aa11.91□□□□□ -0.5
LINC00540-201ENST00000611481 PHF8Q9UPP1 1060 aa11.91□□□□□ -0.5
LINC00540-201ENST00000611481 RIMBP2O15034 1052 aa11.9□□□□□ -0.5
LINC00540-201ENST00000611481 KRTAP3-3Q9BYR6 98 aa11.88□□□□□ -0.51
LINC00540-201ENST00000611481 KRTAP3-2Q9BYR7 98 aa11.88□□□□□ -0.51
LINC00540-201ENST00000611481 TMEM92Q6UXU6 159 aa11.86□□□□□ -0.51
LINC00540-201ENST00000611481 NLRP6P59044 892 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms