RNA–Protein interactions for RNA: ENST00000599264.1

LINC00343-208, long intergenic non-protein coding RNA 343, humanhuman

TSL 3

Gene LINC00343, Length 807 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-208ENST00000599264 FAM212AQ96EL1 285 aa18.27■□□□□ 0.52
LINC00343-208ENST00000599264 CCDC61Q9Y6R9 512 aa18.24■□□□□ 0.51
LINC00343-208ENST00000599264 IFNLR1Q8IU57 520 aaPredicted RBP18.18■□□□□ 0.5
LINC00343-208ENST00000599264 DCAF8Q5TAQ9 597 aa18.16■□□□□ 0.5
LINC00343-208ENST00000599264 DCBLD2Q96PD2 775 aa18.15■□□□□ 0.5
LINC00343-208ENST00000599264 GALR2O43603 387 aaPredicted RBP18.14■□□□□ 0.49
LINC00343-208ENST00000599264 SPOCK2Q92563 424 aa18.14■□□□□ 0.49
LINC00343-208ENST00000599264 KIF12Q96FN5 646 aa18.11■□□□□ 0.49
LINC00343-208ENST00000599264 GSE1Q14687 1217 aa18.1■□□□□ 0.49
LINC00343-208ENST00000599264 MS4A3Q96HJ5 214 aa18.07■□□□□ 0.48
LINC00343-208ENST00000599264 MAP3K13O43283 966 aa18.03■□□□□ 0.48
LINC00343-208ENST00000599264 SGIP1Q9BQI5 828 aa18.01■□□□□ 0.47
LINC00343-208ENST00000599264 PCDHB13Q9Y5F0 798 aa17.97■□□□□ 0.47
LINC00343-208ENST00000599264 POTEIP0CG38 1075 aa17.96■□□□□ 0.47
LINC00343-208ENST00000599264 CIZ1Q9ULV3 898 aaPredicted RBP17.94■□□□□ 0.46
LINC00343-208ENST00000599264 PYGBP11216 843 aa17.93■□□□□ 0.46
LINC00343-208ENST00000599264 ASTLQ6HA08 431 aaPredicted RBP17.84■□□□□ 0.45
LINC00343-208ENST00000599264 CHRM1P11229 460 aaPredicted RBP17.83■□□□□ 0.44
LINC00343-208ENST00000599264 TIE1P35590 1138 aa17.83■□□□□ 0.44
LINC00343-208ENST00000599264 IFNL1Q8IU54 200 aa17.83■□□□□ 0.44
LINC00343-208ENST00000599264 ATMINO43313 823 aaPredicted RBP17.81■□□□□ 0.44
LINC00343-208ENST00000599264 TRIM41Q8WV44 630 aa17.8■□□□□ 0.44
LINC00343-208ENST00000599264 ZNF467Q7Z7K2 595 aaPredicted RBP17.77■□□□□ 0.44
LINC00343-208ENST00000599264 BMP2KQ9NSY1 1161 aaPredicted RBP17.77■□□□□ 0.44
LINC00343-208ENST00000599264 TRPC6Q9Y210 931 aa17.77■□□□□ 0.44
LINC00343-208ENST00000599264 ATN1P54259 1190 aaPredicted RBP17.72■□□□□ 0.43
LINC00343-208ENST00000599264 TTLL13PA6NNM8 815 aa17.71■□□□□ 0.43
LINC00343-208ENST00000599264 SLC39A7Q92504 469 aa17.71■□□□□ 0.43
LINC00343-208ENST00000599264 PCDHB8Q9UN66 801 aa17.71■□□□□ 0.43
LINC00343-208ENST00000599264 PELP1Q8IZL8 1130 aaKnown RBP17.7■□□□□ 0.42
LINC00343-208ENST00000599264 C7P10643 843 aa17.69■□□□□ 0.42
LINC00343-208ENST00000599264 TMEM106CQ9BVX2 250 aa17.68■□□□□ 0.42
LINC00343-208ENST00000599264 LHX8Q68G74 356 aa17.67■□□□□ 0.42
LINC00343-208ENST00000599264 METRNQ9UJH8 293 aa17.64■□□□□ 0.41
LINC00343-208ENST00000599264 TRIM35Q9UPQ4 493 aa17.61■□□□□ 0.41
LINC00343-208ENST00000599264 PSEN1P49768 467 aa17.55■□□□□ 0.4
LINC00343-208ENST00000599264 PDAP1Q13442 181 aaKnown RBP17.55■□□□□ 0.4
LINC00343-208ENST00000599264 IER5LQ5T953 404 aa17.54■□□□□ 0.4
LINC00343-208ENST00000599264 SEC24BO95487 1268 aa17.51■□□□□ 0.39
LINC00343-208ENST00000599264 GOLGA2Q08379 1002 aa17.49■□□□□ 0.39
LINC00343-208ENST00000599264 RIOK3O14730 519 aaKnown RBP17.45■□□□□ 0.38
LINC00343-208ENST00000599264 ECM2O94769 699 aaPredicted RBP17.45■□□□□ 0.38
LINC00343-208ENST00000599264 TAOK2Q9UL54 1235 aa17.43■□□□□ 0.38
LINC00343-208ENST00000599264 MKRN3Q13064 507 aaKnown RBP17.41■□□□□ 0.38
LINC00343-208ENST00000599264 PLCG2P16885 1265 aa17.39■□□□□ 0.37
LINC00343-208ENST00000599264 POTEB2H3BUK9 544 aa17.38■□□□□ 0.37
LINC00343-208ENST00000599264 VGFO15240 615 aaPredicted RBP17.38■□□□□ 0.37
LINC00343-208ENST00000599264 PKD2Q13563 968 aa17.37■□□□□ 0.37
LINC00343-208ENST00000599264 COLQQ9Y215 455 aaPredicted RBP17.36■□□□□ 0.37
LINC00343-208ENST00000599264 MAMSTRQ6ZN01 415 aa17.35■□□□□ 0.37
LINC00343-208ENST00000599264 RNF25Q96BH1 459 aaPredicted RBP17.35■□□□□ 0.37
LINC00343-208ENST00000599264 POTEFA5A3E0 1075 aa17.34■□□□□ 0.37
LINC00343-208ENST00000599264 OCEL1Q9H607 264 aa17.34■□□□□ 0.37
LINC00343-208ENST00000599264 IRX5P78411 483 aaPredicted RBP17.32■□□□□ 0.36
LINC00343-208ENST00000599264 CABP2Q9NPB3 220 aa17.32■□□□□ 0.36
LINC00343-208ENST00000599264 SCUBE2Q9NQ36 999 aa17.28■□□□□ 0.36
LINC00343-208ENST00000599264 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.26■□□□□ 0.35
LINC00343-208ENST00000599264 ZFP91Q96JP5 570 aaPredicted RBP17.26■□□□□ 0.35
LINC00343-208ENST00000599264 OTUD5Q96G74 571 aa17.25■□□□□ 0.35
LINC00343-208ENST00000599264 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.25■□□□□ 0.35
LINC00343-208ENST00000599264 RGL2O15211 777 aa17.21■□□□□ 0.35
LINC00343-208ENST00000599264 POTEJP0CG39 1038 aa17.21■□□□□ 0.35
LINC00343-208ENST00000599264 EFCAB3Q8N7B9 438 aa17.16■□□□□ 0.34
LINC00343-208ENST00000599264 PDCD7Q8N8D1 485 aaKnown RBP17.14■□□□□ 0.33
LINC00343-208ENST00000599264 BCL11BQ9C0K0 894 aaPredicted RBP17.14■□□□□ 0.33
LINC00343-208ENST00000599264 STK25O00506 426 aa17.13■□□□□ 0.33
LINC00343-208ENST00000599264 L3MBTL3Q96JM7 780 aaPredicted RBP17.13■□□□□ 0.33
LINC00343-208ENST00000599264 STK24Q9Y6E0 443 aa17.13■□□□□ 0.33
LINC00343-208ENST00000599264 SOX12O15370 315 aa17.11■□□□□ 0.33
LINC00343-208ENST00000599264 ILDR1Q86SU0 546 aaPredicted RBP17.1■□□□□ 0.33
LINC00343-208ENST00000599264 G3V3G9 751 aa17.06■□□□□ 0.32
LINC00343-208ENST00000599264 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.02■□□□□ 0.32
LINC00343-208ENST00000599264 C3orf67Q6ZVT6 689 aa17■□□□□ 0.31
LINC00343-208ENST00000599264 SLAIN1Q8ND83 568 aa16.98■□□□□ 0.31
LINC00343-208ENST00000599264 NLRP6P59044 892 aa16.97■□□□□ 0.31
LINC00343-208ENST00000599264 DPY19L2Q6NUT2 758 aa16.97■□□□□ 0.31
LINC00343-208ENST00000599264 PHF8Q9UPP1 1060 aa16.96■□□□□ 0.31
LINC00343-208ENST00000599264 BOLA1Q9Y3E2 137 aa16.96■□□□□ 0.31
LINC00343-208ENST00000599264 HS6ST3Q8IZP7 471 aa16.91■□□□□ 0.3
LINC00343-208ENST00000599264 CHGAP10645 457 aaKnown RBP16.89■□□□□ 0.29
LINC00343-208ENST00000599264 AMER1Q5JTC6 1135 aaPredicted RBP16.86■□□□□ 0.29
LINC00343-208ENST00000599264 MS4A4AQ96JQ5 239 aa16.85■□□□□ 0.29
LINC00343-208ENST00000599264 MFRPQ9BY79 579 aa16.85■□□□□ 0.29
LINC00343-208ENST00000599264 DCAF8L2P0C7V8 631 aa16.84■□□□□ 0.29
LINC00343-208ENST00000599264 FBXO22Q8NEZ5 403 aa16.84■□□□□ 0.29
LINC00343-208ENST00000599264 TMEM121BQ9BXQ6 578 aaPredicted RBP16.82■□□□□ 0.28
LINC00343-208ENST00000599264 SNPHO15079 494 aa16.79■□□□□ 0.28
LINC00343-208ENST00000599264 MICALL2Q8IY33 904 aa16.79■□□□□ 0.28
LINC00343-208ENST00000599264 FAM163AQ96GL9 167 aaPredicted RBP16.78■□□□□ 0.28
LINC00343-208ENST00000599264 DNAJC5Q9H3Z4 198 aa16.72■□□□□ 0.27
LINC00343-208ENST00000599264 RYDENQ9NUL5 291 aaKnown RBP16.71■□□□□ 0.27
LINC00343-208ENST00000599264 RTN4Q9NQC3 1192 aaKnown RBP16.65■□□□□ 0.26
LINC00343-208ENST00000599264 POTEMA6NI47 508 aa16.58■□□□□ 0.24
LINC00343-208ENST00000599264 NKX1-1Q15270 411 aaPredicted RBP16.58■□□□□ 0.24
LINC00343-208ENST00000599264 ST18O60284 1047 aa16.57■□□□□ 0.24
LINC00343-208ENST00000599264 POTEGQ6S5H5 508 aa16.57■□□□□ 0.24
LINC00343-208ENST00000599264 PPP1R37O75864 691 aa16.56■□□□□ 0.24
LINC00343-208ENST00000599264 LCE2DQ5TA82 110 aaPredicted RBP16.55■□□□□ 0.24
LINC00343-208ENST00000599264 TMEM92Q6UXU6 159 aa16.54■□□□□ 0.24
LINC00343-208ENST00000599264 DOK7Q18PE1 504 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms