RNA–Protein interactions for RNA: ENST00000589444.1

PTPN2-209, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

Gene PTPN2, Length 2,264 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-209ENST00000589444 IFNLR1Q8IU57 520 aaPredicted RBP8.62□□□□□ -1.03
PTPN2-209ENST00000589444 SAMD1Q6SPF0 538 aaPredicted RBP8.61□□□□□ -1.03
PTPN2-209ENST00000589444 BRPF1P55201 1214 aaPredicted RBP8.6□□□□□ -1.03
PTPN2-209ENST00000589444 IGSF3O75054 1194 aa8.59□□□□□ -1.03
PTPN2-209ENST00000589444 HSP90B1P14625 803 aaKnown RBP8.59□□□□□ -1.03
PTPN2-209ENST00000589444 SLC4A2P04920 1241 aa8.57□□□□□ -1.04
PTPN2-209ENST00000589444 ZMYND15Q9H091 742 aa8.56□□□□□ -1.04
PTPN2-209ENST00000589444 CHRDL2Q6WN34 429 aa8.56□□□□□ -1.04
PTPN2-209ENST00000589444 RSPH6AQ9H0K4 717 aa8.56□□□□□ -1.04
PTPN2-209ENST00000589444 PLSCR2Q9NRY7 297 aa8.55□□□□□ -1.04
PTPN2-209ENST00000589444 CHMP4AQ9BY43 222 aa8.54□□□□□ -1.04
PTPN2-209ENST00000589444 PDIA4P13667 645 aaKnown RBP8.53□□□□□ -1.04
PTPN2-209ENST00000589444 ARID3AQ99856 593 aa8.52□□□□□ -1.04
PTPN2-209ENST00000589444 ECM2O94769 699 aaPredicted RBP8.5□□□□□ -1.05
PTPN2-209ENST00000589444 PUS7Q96PZ0 661 aaKnown RBP8.5□□□□□ -1.05
PTPN2-209ENST00000589444 MYCNP04198 464 aaPredicted RBP8.49□□□□□ -1.05
PTPN2-209ENST00000589444 NECTIN2Q92692 538 aa8.49□□□□□ -1.05
PTPN2-209ENST00000589444 SP7Q8TDD2 431 aaPredicted RBP8.47□□□□□ -1.05
PTPN2-209ENST00000589444 ABCC9O60706 1549 aa8.45□□□□□ -1.06
PTPN2-209ENST00000589444 NEUROD2Q15784 382 aa8.43□□□□□ -1.06
PTPN2-209ENST00000589444 C1orf115Q9H7X2 142 aa8.42□□□□□ -1.06
PTPN2-209ENST00000589444 RGL2O15211 777 aa8.4□□□□□ -1.06
PTPN2-209ENST00000589444 BRD2P25440 801 aaKnown RBP8.4□□□□□ -1.07
PTPN2-209ENST00000589444 AKT1S1Q96B36 256 aa8.4□□□□□ -1.07
PTPN2-209ENST00000589444 UBE2Q2Q8WVN8 375 aa8.38□□□□□ -1.07
PTPN2-209ENST00000589444 KCTD17Q8N5Z5 321 aa8.37□□□□□ -1.07
PTPN2-209ENST00000589444 LMOD2Q6P5Q4 547 aa8.36□□□□□ -1.07
PTPN2-209ENST00000589444 ZBTB12Q9Y330 459 aaPredicted RBP8.36□□□□□ -1.07
PTPN2-209ENST00000589444 RAD21O60216 631 aa8.35□□□□□ -1.07
PTPN2-209ENST00000589444 CHGAP10645 457 aaKnown RBP8.35□□□□□ -1.07
PTPN2-209ENST00000589444 POLA2Q14181 598 aa8.35□□□□□ -1.07
PTPN2-209ENST00000589444 PROM2Q8N271 834 aa8.34□□□□□ -1.07
PTPN2-209ENST00000589444 RGS22Q8NE09 1264 aa8.34□□□□□ -1.07
PTPN2-209ENST00000589444 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.34□□□□□ -1.07
PTPN2-209ENST00000589444 SPDYE4A6NLX3 237 aa8.29□□□□□ -1.08
PTPN2-209ENST00000589444 SPOCK2Q92563 424 aa8.29□□□□□ -1.08
PTPN2-209ENST00000589444 DHX37Q8IY37 1157 aaKnown RBP8.28□□□□□ -1.08
PTPN2-209ENST00000589444 APBB1O00213 710 aa8.28□□□□□ -1.08
PTPN2-209ENST00000589444 ARID3CA6NKF2 412 aa8.27□□□□□ -1.09
PTPN2-209ENST00000589444 MTMR7Q9Y216 660 aa8.27□□□□□ -1.09
PTPN2-209ENST00000589444 PIP4P2Q8N4L2 257 aa8.26□□□□□ -1.09
PTPN2-209ENST00000589444 RBM25P49756 843 aaKnown RBP8.24□□□□□ -1.09
PTPN2-209ENST00000589444 REM2Q8IYK8 340 aaPredicted RBP8.24□□□□□ -1.09
PTPN2-209ENST00000589444 TRAIPQ9BWF2 469 aa8.23□□□□□ -1.09
PTPN2-209ENST00000589444 ATF5Q9Y2D1 282 aaPredicted RBP8.23□□□□□ -1.09
PTPN2-209ENST00000589444 SLC24A3Q9HC58 644 aa8.22□□□□□ -1.09
PTPN2-209ENST00000589444 TAF7LQ5H9L4 462 aa8.22□□□□□ -1.09
PTPN2-209ENST00000589444 HAX1O00165 279 aa8.21□□□□□ -1.1
PTPN2-209ENST00000589444 P3H3Q8IVL6 736 aa8.21□□□□□ -1.1
PTPN2-209ENST00000589444 POLR3GLQ9BT43 218 aa8.21□□□□□ -1.1
PTPN2-209ENST00000589444 ZC3H15Q8WU90 426 aaKnown RBP8.2□□□□□ -1.1
PTPN2-209ENST00000589444 ZNF428Q96B54 188 aa8.2□□□□□ -1.1
PTPN2-209ENST00000589444 FXR2P51116 673 aaKnown RBP eCLIP8.19□□□□□ -1.1
PTPN2-209ENST00000589444 PDE4CQ08493 712 aa8.19□□□□□ -1.1
PTPN2-209ENST00000589444 TMCO4Q5TGY1 634 aa8.19□□□□□ -1.1
PTPN2-209ENST00000589444 HS6ST3Q8IZP7 471 aa8.19□□□□□ -1.1
PTPN2-209ENST00000589444 FAM9AQ8IZU1 332 aaPredicted RBP8.19□□□□□ -1.1
PTPN2-209ENST00000589444 FOXD4L5Q5VV16 416 aaPredicted RBP8.18□□□□□ -1.1
PTPN2-209ENST00000589444 FOXD4L4Q8WXT5 416 aaPredicted RBP8.18□□□□□ -1.1
PTPN2-209ENST00000589444 E9PSI1 815 aa8.17□□□□□ -1.1
PTPN2-209ENST00000589444 MFAP1P55081 439 aaKnown RBP8.17□□□□□ -1.1
PTPN2-209ENST00000589444 AEBP1Q8IUX7 1158 aa8.15□□□□□ -1.1
PTPN2-209ENST00000589444 CCDC82Q8N4S0 544 aa8.14□□□□□ -1.11
PTPN2-209ENST00000589444 USP35Q9P2H5 1018 aa8.14□□□□□ -1.11
PTPN2-209ENST00000589444 PITPNM1O00562 1244 aa8.13□□□□□ -1.11
PTPN2-209ENST00000589444 BCL11AQ9H165 835 aa8.12□□□□□ -1.11
PTPN2-209ENST00000589444 GTPBP6O43824 516 aaPredicted RBP8.11□□□□□ -1.11
PTPN2-209ENST00000589444 FAM177A1Q8N128 213 aaPredicted RBP8.11□□□□□ -1.11
PTPN2-209ENST00000589444 RSPH4AQ5TD94 716 aa8.1□□□□□ -1.11
PTPN2-209ENST00000589444 MKRN3Q13064 507 aaKnown RBP8.1□□□□□ -1.11
PTPN2-209ENST00000589444 GZF1Q9H116 711 aaPredicted RBP8.09□□□□□ -1.11
PTPN2-209ENST00000589444 NKX1-1Q15270 411 aaPredicted RBP8.08□□□□□ -1.12
PTPN2-209ENST00000589444 IL27Q8NEV9 243 aa8.08□□□□□ -1.12
PTPN2-209ENST00000589444 BCCIPQ9P287 314 aaKnown RBP eCLIP8.08□□□□□ -1.12
PTPN2-209ENST00000589444 NEFLP07196 543 aa8.08□□□□□ -1.12
PTPN2-209ENST00000589444 OSCARQ8IYS5 282 aa8.08□□□□□ -1.12
PTPN2-209ENST00000589444 ZNF692Q9BU19 519 aaPredicted RBP8.08□□□□□ -1.12
PTPN2-209ENST00000589444 WDR70Q9NW82 654 aa8.06□□□□□ -1.12
PTPN2-209ENST00000589444 KCNV2Q8TDN2 545 aa8.05□□□□□ -1.12
PTPN2-209ENST00000589444 ZMYND10O75800 440 aa8.02□□□□□ -1.13
PTPN2-209ENST00000589444 NISCHQ9Y2I1 1504 aa8.02□□□□□ -1.13
PTPN2-209ENST00000589444 FLIIQ13045 1269 aa8.01□□□□□ -1.13
PTPN2-209ENST00000589444 GPBP1L1Q9HC44 474 aaPredicted RBP8.01□□□□□ -1.13
PTPN2-209ENST00000589444 TRAK2O60296 914 aa8□□□□□ -1.13
PTPN2-209ENST00000589444 SPDYE2BA6NHP3 402 aa7.99□□□□□ -1.13
PTPN2-209ENST00000589444 PPM1GO15355 546 aaPredicted RBP7.99□□□□□ -1.13
PTPN2-209ENST00000589444 SPDYE6P0CI01 402 aa7.99□□□□□ -1.13
PTPN2-209ENST00000589444 SPDYE2Q495Y8 402 aa7.99□□□□□ -1.13
PTPN2-209ENST00000589444 A6NJR5 290 aa7.98□□□□□ -1.13
PTPN2-209ENST00000589444 CWC22Q9HCG8 908 aaKnown RBP7.98□□□□□ -1.13
PTPN2-209ENST00000589444 TICAM2Q86XR7 235 aa7.98□□□□□ -1.13
PTPN2-209ENST00000589444 BARGINQ6ZT62 677 aa7.97□□□□□ -1.13
PTPN2-209ENST00000589444 CCDC125Q86Z20 511 aa7.97□□□□□ -1.13
PTPN2-209ENST00000589444 EVX2Q03828 476 aa7.96□□□□□ -1.13
PTPN2-209ENST00000589444 FBXW7Q969H0 707 aa7.96□□□□□ -1.13
PTPN2-209ENST00000589444 C19orf67A6NJJ6 358 aa7.96□□□□□ -1.14
PTPN2-209ENST00000589444 PSMD1Q99460 953 aa7.96□□□□□ -1.14
PTPN2-209ENST00000589444 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.96□□□□□ -1.14
PTPN2-209ENST00000589444 CLSTN1O94985 981 aa7.95□□□□□ -1.14
PTPN2-209ENST00000589444 CERS3Q8IU89 383 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms