RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 ATMINO43313 823 aaPredicted RBP12.45□□□□□ -0.42
DNMT1-220ENST00000589351 METRNQ9UJH8 293 aa12.44□□□□□ -0.42
DNMT1-220ENST00000589351 POTEMA6NI47 508 aa12.42□□□□□ -0.42
DNMT1-220ENST00000589351 TSPYL2Q9H2G4 693 aaPredicted RBP12.42□□□□□ -0.42
DNMT1-220ENST00000589351 POTEJP0CG39 1038 aa12.41□□□□□ -0.42
DNMT1-220ENST00000589351 CCDC180Q9P1Z9 1646 aa12.4□□□□□ -0.42
DNMT1-220ENST00000589351 C7P10643 843 aa12.4□□□□□ -0.42
DNMT1-220ENST00000589351 PROM2Q8N271 834 aa12.4□□□□□ -0.42
DNMT1-220ENST00000589351 SLC39A7Q92504 469 aa12.4□□□□□ -0.42
DNMT1-220ENST00000589351 POTEGQ6S5H5 508 aa12.38□□□□□ -0.43
DNMT1-220ENST00000589351 CCDC61Q9Y6R9 512 aa12.37□□□□□ -0.43
DNMT1-220ENST00000589351 ATN1P54259 1190 aaPredicted RBP12.33□□□□□ -0.44
DNMT1-220ENST00000589351 KIF12Q96FN5 646 aa12.32□□□□□ -0.44
DNMT1-220ENST00000589351 MAMSTRQ6ZN01 415 aa12.28□□□□□ -0.44
DNMT1-220ENST00000589351 TRPC6Q9Y210 931 aa12.28□□□□□ -0.44
DNMT1-220ENST00000589351 BMP2KQ9NSY1 1161 aaPredicted RBP12.26□□□□□ -0.45
DNMT1-220ENST00000589351 POTEFA5A3E0 1075 aa12.25□□□□□ -0.45
DNMT1-220ENST00000589351 MAP3K13O43283 966 aa12.23□□□□□ -0.45
DNMT1-220ENST00000589351 LCE2DQ5TA82 110 aaPredicted RBP12.23□□□□□ -0.45
DNMT1-220ENST00000589351 RASEFQ8IZ41 740 aa12.22□□□□□ -0.45
DNMT1-220ENST00000589351 MIER1Q8N108 512 aa12.22□□□□□ -0.45
DNMT1-220ENST00000589351 SCUBE2Q9NQ36 999 aa12.21□□□□□ -0.45
DNMT1-220ENST00000589351 FAM163AQ96GL9 167 aaPredicted RBP12.2□□□□□ -0.46
DNMT1-220ENST00000589351 PCDH10Q9P2E7 1040 aa12.19□□□□□ -0.46
DNMT1-220ENST00000589351 TIE1P35590 1138 aa12.18□□□□□ -0.46
DNMT1-220ENST00000589351 PLEKHG5O94827 1062 aa12.17□□□□□ -0.46
DNMT1-220ENST00000589351 TTLL13PA6NNM8 815 aa12.13□□□□□ -0.47
DNMT1-220ENST00000589351 COLQQ9Y215 455 aaPredicted RBP12.13□□□□□ -0.47
DNMT1-220ENST00000589351 SEC24BO95487 1268 aa12.08□□□□□ -0.48
DNMT1-220ENST00000589351 PLCD3Q8N3E9 789 aa12.07□□□□□ -0.48
DNMT1-220ENST00000589351 TRIM35Q9UPQ4 493 aa12.05□□□□□ -0.48
DNMT1-220ENST00000589351 PCDHB13Q9Y5F0 798 aa12.04□□□□□ -0.48
DNMT1-220ENST00000589351 NUBP1P53384 320 aa12.03□□□□□ -0.48
DNMT1-220ENST00000589351 SGIP1Q9BQI5 828 aa12.03□□□□□ -0.48
DNMT1-220ENST00000589351 IER5LQ5T953 404 aa12.01□□□□□ -0.49
DNMT1-220ENST00000589351 IFNL1Q8IU54 200 aa11.99□□□□□ -0.49
DNMT1-220ENST00000589351 ZBTB47Q9UFB7 747 aaPredicted RBP11.95□□□□□ -0.5
DNMT1-220ENST00000589351 TMEM106CQ9BVX2 250 aa11.94□□□□□ -0.5
DNMT1-220ENST00000589351 SLAIN1Q8ND83 568 aa11.92□□□□□ -0.5
DNMT1-220ENST00000589351 CDAN1Q8IWY9 1227 aa11.91□□□□□ -0.5
DNMT1-220ENST00000589351 RB1CC1Q8TDY2 1594 aa11.9□□□□□ -0.5
DNMT1-220ENST00000589351 FAM212AQ96EL1 285 aa11.9□□□□□ -0.5
DNMT1-220ENST00000589351 PLCG2P16885 1265 aa11.88□□□□□ -0.51
DNMT1-220ENST00000589351 ST18O60284 1047 aa11.87□□□□□ -0.51
DNMT1-220ENST00000589351 IRX5P78411 483 aaPredicted RBP11.86□□□□□ -0.51
DNMT1-220ENST00000589351 DCAF8L2P0C7V8 631 aa11.81□□□□□ -0.52
DNMT1-220ENST00000589351 PYGBP11216 843 aa11.8□□□□□ -0.52
DNMT1-220ENST00000589351 FKBP8Q14318 412 aa11.8□□□□□ -0.52
DNMT1-220ENST00000589351 DCAF8Q5TAQ9 597 aa11.8□□□□□ -0.52
DNMT1-220ENST00000589351 NACADO15069 1562 aa11.79□□□□□ -0.52
DNMT1-220ENST00000589351 OCEL1Q9H607 264 aa11.78□□□□□ -0.52
DNMT1-220ENST00000589351 PCDHB8Q9UN66 801 aa11.76□□□□□ -0.53
DNMT1-220ENST00000589351 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.7□□□□□ -0.54
DNMT1-220ENST00000589351 TMEM121BQ9BXQ6 578 aaPredicted RBP11.68□□□□□ -0.54
DNMT1-220ENST00000589351 SNPHO15079 494 aa11.66□□□□□ -0.54
DNMT1-220ENST00000589351 MARVELD3Q96A59 401 aa11.65□□□□□ -0.54
DNMT1-220ENST00000589351 MMRN1Q13201 1228 aa11.64□□□□□ -0.55
DNMT1-220ENST00000589351 SPNS2Q8IVW8 549 aa11.63□□□□□ -0.55
DNMT1-220ENST00000589351 PDCD7Q8N8D1 485 aaKnown RBP11.63□□□□□ -0.55
DNMT1-220ENST00000589351 FBXO3Q9UK99 471 aa11.61□□□□□ -0.55
DNMT1-220ENST00000589351 MYO15BQ96JP2 1530 aa11.58□□□□□ -0.56
DNMT1-220ENST00000589351 MKRN3Q13064 507 aaKnown RBP11.57□□□□□ -0.56
DNMT1-220ENST00000589351 GSE1Q14687 1217 aa11.57□□□□□ -0.56
DNMT1-220ENST00000589351 ZNF467Q7Z7K2 595 aaPredicted RBP11.57□□□□□ -0.56
DNMT1-220ENST00000589351 C3orf67Q6ZVT6 689 aa11.56□□□□□ -0.56
DNMT1-220ENST00000589351 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
DNMT1-220ENST00000589351 GOLGA2Q08379 1002 aa11.55□□□□□ -0.56
DNMT1-220ENST00000589351 L3MBTL3Q96JM7 780 aaPredicted RBP11.54□□□□□ -0.56
DNMT1-220ENST00000589351 UNC13AQ9UPW8 1703 aa11.53□□□□□ -0.56
DNMT1-220ENST00000589351 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.53□□□□□ -0.564e-8■□□□□ 8.5
DNMT1-220ENST00000589351 CHRM1P11229 460 aaPredicted RBP11.52□□□□□ -0.57
DNMT1-220ENST00000589351 PSEN1P49768 467 aa11.52□□□□□ -0.57
DNMT1-220ENST00000589351 VASPP50552 380 aaPredicted RBP11.52□□□□□ -0.57
DNMT1-220ENST00000589351 EMP3P54852 163 aa11.51□□□□□ -0.57
DNMT1-220ENST00000589351 POTEB3A0JP26 581 aa11.49□□□□□ -0.57
DNMT1-220ENST00000589351 POTEBQ6S5H4 581 aa11.49□□□□□ -0.57
DNMT1-220ENST00000589351 BICRAQ9NZM4 1560 aa11.47□□□□□ -0.57
DNMT1-220ENST00000589351 DPY19L2Q6NUT2 758 aa11.46□□□□□ -0.57
DNMT1-220ENST00000589351 ILDR1Q86SU0 546 aaPredicted RBP11.46□□□□□ -0.57
DNMT1-220ENST00000589351 FAM205CA6NFA0 338 aa11.45□□□□□ -0.58
DNMT1-220ENST00000589351 HS3ST6Q96QI5 342 aa11.45□□□□□ -0.58
DNMT1-220ENST00000589351 KRTAP3-3Q9BYR6 98 aa11.45□□□□□ -0.58
DNMT1-220ENST00000589351 KRTAP3-2Q9BYR7 98 aa11.45□□□□□ -0.58
DNMT1-220ENST00000589351 PDAP1Q13442 181 aaKnown RBP11.42□□□□□ -0.58
DNMT1-220ENST00000589351 SHROOM4Q9ULL8 1493 aa11.39□□□□□ -0.59
DNMT1-220ENST00000589351 CABP2Q9NPB3 220 aa11.39□□□□□ -0.59
DNMT1-220ENST00000589351 DCAF1Q9Y4B6 1507 aa11.38□□□□□ -0.59
DNMT1-220ENST00000589351 HOXB3P14651 431 aaPredicted RBP11.36□□□□□ -0.59
DNMT1-220ENST00000589351 BOLA1Q9Y3E2 137 aa11.36□□□□□ -0.59
DNMT1-220ENST00000589351 ZCCHC6Q5VYS8 1495 aaKnown RBP11.36□□□□□ -0.59
DNMT1-220ENST00000589351 CIZ1Q9ULV3 898 aaPredicted RBP11.33□□□□□ -0.6
DNMT1-220ENST00000589351 G3V3G9 751 aa11.32□□□□□ -0.6
DNMT1-220ENST00000589351 IFNLR1Q8IU57 520 aaPredicted RBP11.32□□□□□ -0.6
DNMT1-220ENST00000589351 CECR2Q9BXF3 1484 aa11.32□□□□□ -0.6
DNMT1-220ENST00000589351 SPOCK2Q92563 424 aa11.31□□□□□ -0.6
DNMT1-220ENST00000589351 CC2D2AQ9P2K1 1620 aa11.29□□□□□ -0.6
DNMT1-220ENST00000589351 HOXB1P14653 301 aaPredicted RBP11.29□□□□□ -0.6
DNMT1-220ENST00000589351 ZNF710Q8N1W2 664 aa11.27□□□□□ -0.61
DNMT1-220ENST00000589351 SCRIBQ14160 1630 aa11.27□□□□□ -0.61
DNMT1-220ENST00000589351 EIF4G1Q04637 1599 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms