RNA–Protein interactions for RNA: ENST00000583988.1

PPP4R1-227, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 3

Gene PPP4R1, Length 582 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-227ENST00000583988 CCDC61Q9Y6R9 512 aa11.67□□□□□ -0.54
PPP4R1-227ENST00000583988 GALR2O43603 387 aaPredicted RBP11.66□□□□□ -0.54
PPP4R1-227ENST00000583988 FAM212AQ96EL1 285 aa11.65□□□□□ -0.54
PPP4R1-227ENST00000583988 IFNLR1Q8IU57 520 aaPredicted RBP11.64□□□□□ -0.55
PPP4R1-227ENST00000583988 DCAF8Q5TAQ9 597 aa11.61□□□□□ -0.55
PPP4R1-227ENST00000583988 DCBLD2Q96PD2 775 aa11.61□□□□□ -0.55
PPP4R1-227ENST00000583988 KIF12Q96FN5 646 aa11.58□□□□□ -0.56
PPP4R1-227ENST00000583988 MS4A3Q96HJ5 214 aa11.58□□□□□ -0.56
PPP4R1-227ENST00000583988 MAP3K13O43283 966 aa11.56□□□□□ -0.56
PPP4R1-227ENST00000583988 POTEIP0CG38 1075 aa11.56□□□□□ -0.56
PPP4R1-227ENST00000583988 SPOCK2Q92563 424 aa11.55□□□□□ -0.56
PPP4R1-227ENST00000583988 PYGBP11216 843 aa11.5□□□□□ -0.57
PPP4R1-227ENST00000583988 GSE1Q14687 1217 aa11.5□□□□□ -0.57
PPP4R1-227ENST00000583988 PCDHB13Q9Y5F0 798 aa11.49□□□□□ -0.57
PPP4R1-227ENST00000583988 CIZ1Q9ULV3 898 aaPredicted RBP11.48□□□□□ -0.57
PPP4R1-227ENST00000583988 TRPC6Q9Y210 931 aa11.45□□□□□ -0.58
PPP4R1-227ENST00000583988 IFNL1Q8IU54 200 aa11.43□□□□□ -0.58
PPP4R1-227ENST00000583988 SGIP1Q9BQI5 828 aa11.43□□□□□ -0.58
PPP4R1-227ENST00000583988 ATMINO43313 823 aaPredicted RBP11.41□□□□□ -0.58
PPP4R1-227ENST00000583988 ASTLQ6HA08 431 aaPredicted RBP11.41□□□□□ -0.58
PPP4R1-227ENST00000583988 PELP1Q8IZL8 1130 aaKnown RBP11.4□□□□□ -0.58
PPP4R1-227ENST00000583988 BMP2KQ9NSY1 1161 aaPredicted RBP11.39□□□□□ -0.59
PPP4R1-227ENST00000583988 ATN1P54259 1190 aaPredicted RBP11.37□□□□□ -0.59
PPP4R1-227ENST00000583988 PCDHB8Q9UN66 801 aa11.37□□□□□ -0.59
PPP4R1-227ENST00000583988 TIE1P35590 1138 aa11.36□□□□□ -0.59
PPP4R1-227ENST00000583988 TTLL13PA6NNM8 815 aa11.34□□□□□ -0.59
PPP4R1-227ENST00000583988 LHX8Q68G74 356 aa11.34□□□□□ -0.59
PPP4R1-227ENST00000583988 CHRM1P11229 460 aaPredicted RBP11.33□□□□□ -0.6
PPP4R1-227ENST00000583988 TMEM106CQ9BVX2 250 aa11.32□□□□□ -0.6
PPP4R1-227ENST00000583988 METRNQ9UJH8 293 aa11.31□□□□□ -0.6
PPP4R1-227ENST00000583988 ZNF467Q7Z7K2 595 aaPredicted RBP11.3□□□□□ -0.6
PPP4R1-227ENST00000583988 SLC39A7Q92504 469 aa11.3□□□□□ -0.6
PPP4R1-227ENST00000583988 C7P10643 843 aa11.28□□□□□ -0.6
PPP4R1-227ENST00000583988 TRIM35Q9UPQ4 493 aa11.28□□□□□ -0.6
PPP4R1-227ENST00000583988 TRIM41Q8WV44 630 aa11.25□□□□□ -0.61
PPP4R1-227ENST00000583988 POTEB2H3BUK9 544 aa11.21□□□□□ -0.61
PPP4R1-227ENST00000583988 PSEN1P49768 467 aa11.21□□□□□ -0.61
PPP4R1-227ENST00000583988 SEC24BO95487 1268 aa11.2□□□□□ -0.62
PPP4R1-227ENST00000583988 PDAP1Q13442 181 aaKnown RBP11.18□□□□□ -0.62
PPP4R1-227ENST00000583988 COLQQ9Y215 455 aaPredicted RBP11.17□□□□□ -0.62
PPP4R1-227ENST00000583988 GOLGA2Q08379 1002 aa11.16□□□□□ -0.62
PPP4R1-227ENST00000583988 IER5LQ5T953 404 aa11.16□□□□□ -0.62
PPP4R1-227ENST00000583988 POTEFA5A3E0 1075 aa11.15□□□□□ -0.62
PPP4R1-227ENST00000583988 ECM2O94769 699 aaPredicted RBP11.14□□□□□ -0.63
PPP4R1-227ENST00000583988 RIOK3O14730 519 aaKnown RBP11.13□□□□□ -0.63
PPP4R1-227ENST00000583988 RNF25Q96BH1 459 aaPredicted RBP11.13□□□□□ -0.63
PPP4R1-227ENST00000583988 PKD2Q13563 968 aa11.12□□□□□ -0.63
PPP4R1-227ENST00000583988 PLCG2P16885 1265 aa11.11□□□□□ -0.63
PPP4R1-227ENST00000583988 MKRN3Q13064 507 aaKnown RBP11.11□□□□□ -0.63
PPP4R1-227ENST00000583988 POTEJP0CG39 1038 aa11.1□□□□□ -0.63
PPP4R1-227ENST00000583988 CABP2Q9NPB3 220 aa11.1□□□□□ -0.63
PPP4R1-227ENST00000583988 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
PPP4R1-227ENST00000583988 IRX5P78411 483 aaPredicted RBP11.08□□□□□ -0.64
PPP4R1-227ENST00000583988 OCEL1Q9H607 264 aa11.06□□□□□ -0.64
PPP4R1-227ENST00000583988 VGFO15240 615 aaPredicted RBP11.05□□□□□ -0.64
PPP4R1-227ENST00000583988 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.04□□□□□ -0.64
PPP4R1-227ENST00000583988 ZFP91Q96JP5 570 aaPredicted RBP11.04□□□□□ -0.64
PPP4R1-227ENST00000583988 MAMSTRQ6ZN01 415 aa11.03□□□□□ -0.64
PPP4R1-227ENST00000583988 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.03□□□□□ -0.642e-7■■■■□ 21.5
PPP4R1-227ENST00000583988 RGL2O15211 777 aa11.02□□□□□ -0.65
PPP4R1-227ENST00000583988 SCUBE2Q9NQ36 999 aa11.02□□□□□ -0.65
PPP4R1-227ENST00000583988 TAOK2Q9UL54 1235 aa11□□□□□ -0.65
PPP4R1-227ENST00000583988 AMER1Q5JTC6 1135 aaPredicted RBP10.99□□□□□ -0.65
PPP4R1-227ENST00000583988 EFCAB3Q8N7B9 438 aa10.99□□□□□ -0.65
PPP4R1-227ENST00000583988 PDCD7Q8N8D1 485 aaKnown RBP10.98□□□□□ -0.65
PPP4R1-227ENST00000583988 BCL11BQ9C0K0 894 aaPredicted RBP10.96□□□□□ -0.65
PPP4R1-227ENST00000583988 STK25O00506 426 aa10.95□□□□□ -0.66
PPP4R1-227ENST00000583988 RTN4Q9NQC3 1192 aaKnown RBP10.95□□□□□ -0.66
PPP4R1-227ENST00000583988 STK24Q9Y6E0 443 aa10.95□□□□□ -0.66
PPP4R1-227ENST00000583988 DPY19L2Q6NUT2 758 aa10.92□□□□□ -0.66
PPP4R1-227ENST00000583988 ILDR1Q86SU0 546 aaPredicted RBP10.91□□□□□ -0.66
PPP4R1-227ENST00000583988 L3MBTL3Q96JM7 780 aaPredicted RBP10.9□□□□□ -0.66
PPP4R1-227ENST00000583988 SOX12O15370 315 aa10.87□□□□□ -0.67
PPP4R1-227ENST00000583988 SLAIN1Q8ND83 568 aa10.87□□□□□ -0.67
PPP4R1-227ENST00000583988 PHF8Q9UPP1 1060 aa10.87□□□□□ -0.67
PPP4R1-227ENST00000583988 G3V3G9 751 aa10.86□□□□□ -0.67
PPP4R1-227ENST00000583988 C3orf67Q6ZVT6 689 aa10.86□□□□□ -0.67
PPP4R1-227ENST00000583988 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.86□□□□□ -0.67
PPP4R1-227ENST00000583988 BOLA1Q9Y3E2 137 aa10.84□□□□□ -0.67
PPP4R1-227ENST00000583988 MS4A4AQ96JQ5 239 aa10.81□□□□□ -0.68
PPP4R1-227ENST00000583988 CHGAP10645 457 aaKnown RBP10.8□□□□□ -0.68
PPP4R1-227ENST00000583988 NLRP6P59044 892 aa10.8□□□□□ -0.68
PPP4R1-227ENST00000583988 DCAF8L2P0C7V8 631 aa10.79□□□□□ -0.68
PPP4R1-227ENST00000583988 FAM163AQ96GL9 167 aaPredicted RBP10.79□□□□□ -0.68
PPP4R1-227ENST00000583988 MFRPQ9BY79 579 aa10.79□□□□□ -0.68
PPP4R1-227ENST00000583988 FBXO22Q8NEZ5 403 aa10.77□□□□□ -0.69
PPP4R1-227ENST00000583988 HS6ST3Q8IZP7 471 aa10.76□□□□□ -0.69
PPP4R1-227ENST00000583988 MICALL2Q8IY33 904 aa10.74□□□□□ -0.69
PPP4R1-227ENST00000583988 TMEM121BQ9BXQ6 578 aaPredicted RBP10.73□□□□□ -0.69
PPP4R1-227ENST00000583988 SNPHO15079 494 aa10.67□□□□□ -0.7
PPP4R1-227ENST00000583988 LCE2DQ5TA82 110 aaPredicted RBP10.67□□□□□ -0.7
PPP4R1-227ENST00000583988 POTEMA6NI47 508 aa10.66□□□□□ -0.7
PPP4R1-227ENST00000583988 ST18O60284 1047 aa10.64□□□□□ -0.71
PPP4R1-227ENST00000583988 POTEGQ6S5H5 508 aa10.64□□□□□ -0.71
PPP4R1-227ENST00000583988 PPP1R37O75864 691 aa10.63□□□□□ -0.71
PPP4R1-227ENST00000583988 NKX1-1Q15270 411 aaPredicted RBP10.63□□□□□ -0.71
PPP4R1-227ENST00000583988 TMEM92Q6UXU6 159 aa10.63□□□□□ -0.71
PPP4R1-227ENST00000583988 DNAJC5Q9H3Z4 198 aa10.58□□□□□ -0.72
PPP4R1-227ENST00000583988 HOXB3P14651 431 aaPredicted RBP10.54□□□□□ -0.72
PPP4R1-227ENST00000583988 ZNF710Q8N1W2 664 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms