RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	PHF12	Q96QT6	1004 aa		11.58	□□□□□ -0.56
SS18-223	ENST00000583595	CLCN6	P51797	869 aa		11.57	□□□□□ -0.56
SS18-223	ENST00000583595	CCDC61	Q9Y6R9	512 aa		11.53	□□□□□ -0.56
SS18-223	ENST00000583595	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.52	□□□□□ -0.57
SS18-223	ENST00000583595	GALR2	O43603	387 aa	Predicted RBP	11.49	□□□□□ -0.57
SS18-223	ENST00000583595	FAM212A	Q96EL1	285 aa		11.49	□□□□□ -0.57
SS18-223	ENST00000583595	DCAF8	Q5TAQ9	597 aa		11.46	□□□□□ -0.57
SS18-223	ENST00000583595	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.45	□□□□□ -0.58
SS18-223	ENST00000583595	KIF12	Q96FN5	646 aa		11.45	□□□□□ -0.58
SS18-223	ENST00000583595	SPOCK2	Q92563	424 aa		11.43	□□□□□ -0.58
SS18-223	ENST00000583595	MS4A3	Q96HJ5	214 aa		11.43	□□□□□ -0.58
SS18-223	ENST00000583595	DCBLD2	Q96PD2	775 aa		11.42	□□□□□ -0.58
SS18-223	ENST00000583595	POTEI	P0CG38	1075 aa		11.41	□□□□□ -0.58
SS18-223	ENST00000583595	MAP3K13	O43283	966 aa		11.4	□□□□□ -0.58
SS18-223	ENST00000583595	GSE1	Q14687	1217 aa		11.37	□□□□□ -0.59
SS18-223	ENST00000583595	PYGB	P11216	843 aa		11.34	□□□□□ -0.59
SS18-223	ENST00000583595	PCDHB13	Q9Y5F0	798 aa		11.33	□□□□□ -0.6
SS18-223	ENST00000583595	SGIP1	Q9BQI5	828 aa		11.32	□□□□□ -0.6
SS18-223	ENST00000583595	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.32	□□□□□ -0.6
SS18-223	ENST00000583595	TRPC6	Q9Y210	931 aa		11.29	□□□□□ -0.6
SS18-223	ENST00000583595	IFNL1	Q8IU54	200 aa		11.28	□□□□□ -0.6
SS18-223	ENST00000583595	ATMIN	O43313	823 aa	Predicted RBP	11.26	□□□□□ -0.61
SS18-223	ENST00000583595	ASTL	Q6HA08	431 aa	Predicted RBP	11.25	□□□□□ -0.61
SS18-223	ENST00000583595	CHRM1	P11229	460 aa	Predicted RBP	11.24	□□□□□ -0.61
SS18-223	ENST00000583595	PELP1	Q8IZL8	1130 aa	Known RBP	11.24	□□□□□ -0.61
SS18-223	ENST00000583595	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.24	□□□□□ -0.61
SS18-223	ENST00000583595	TIE1	P35590	1138 aa		11.23	□□□□□ -0.61
SS18-223	ENST00000583595	PCDHB8	Q9UN66	801 aa		11.22	□□□□□ -0.61
SS18-223	ENST00000583595	ATN1	P54259	1190 aa	Predicted RBP	11.21	□□□□□ -0.61
SS18-223	ENST00000583595	TTLL13P	A6NNM8	815 aa		11.19	□□□□□ -0.62
SS18-223	ENST00000583595	PLSCR2	Q9NRY7	297 aa		11.18	□□□□□ -0.62
SS18-223	ENST00000583595	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.17	□□□□□ -0.62
SS18-223	ENST00000583595	TRIM41	Q8WV44	630 aa		11.16	□□□□□ -0.62
SS18-223	ENST00000583595	TMEM106C	Q9BVX2	250 aa		11.16	□□□□□ -0.62
SS18-223	ENST00000583595	LHX8	Q68G74	356 aa		11.15	□□□□□ -0.62
SS18-223	ENST00000583595	C7	P10643	843 aa		11.14	□□□□□ -0.63
SS18-223	ENST00000583595	SLC39A7	Q92504	469 aa		11.14	□□□□□ -0.63
SS18-223	ENST00000583595	METRN	Q9UJH8	293 aa		11.13	□□□□□ -0.63
SS18-223	ENST00000583595	TRIM35	Q9UPQ4	493 aa		11.12	□□□□□ -0.63
SS18-223	ENST00000583595	PSEN1	P49768	467 aa		11.07	□□□□□ -0.64
SS18-223	ENST00000583595	PDAP1	Q13442	181 aa	Known RBP	11.06	□□□□□ -0.64
SS18-223	ENST00000583595	POTEB2	H3BUK9	544 aa		11.04	□□□□□ -0.64
SS18-223	ENST00000583595	IER5L	Q5T953	404 aa		11.04	□□□□□ -0.64
SS18-223	ENST00000583595	SEC24B	O95487	1268 aa		11.02	□□□□□ -0.65
SS18-223	ENST00000583595	PKD2	Q13563	968 aa		11.02	□□□□□ -0.65
SS18-223	ENST00000583595	POTEF	A5A3E0	1075 aa		11.01	□□□□□ -0.65
SS18-223	ENST00000583595	ECM2	O94769	699 aa	Predicted RBP	11.01	□□□□□ -0.65
SS18-223	ENST00000583595	RNF25	Q96BH1	459 aa	Predicted RBP	11.01	□□□□□ -0.65
SS18-223	ENST00000583595	COLQ	Q9Y215	455 aa	Predicted RBP	11.01	□□□□□ -0.65
SS18-223	ENST00000583595	RIOK3	O14730	519 aa	Known RBP	11	□□□□□ -0.65
SS18-223	ENST00000583595	GOLGA2	Q08379	1002 aa		10.98	□□□□□ -0.65
SS18-223	ENST00000583595	POTEJ	P0CG39	1038 aa		10.95	□□□□□ -0.66
SS18-223	ENST00000583595	IRX5	P78411	483 aa	Predicted RBP	10.95	□□□□□ -0.66
SS18-223	ENST00000583595	MKRN3	Q13064	507 aa	Known RBP	10.95	□□□□□ -0.66
SS18-223	ENST00000583595	VGF	O15240	615 aa	Predicted RBP	10.94	□□□□□ -0.66
SS18-223	ENST00000583595	PLCG2	P16885	1265 aa		10.94	□□□□□ -0.66
SS18-223	ENST00000583595	CABP2	Q9NPB3	220 aa		10.94	□□□□□ -0.66
SS18-223	ENST00000583595	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.92	□□□□□ -0.66
SS18-223	ENST00000583595	OTUD5	Q96G74	571 aa		10.92	□□□□□ -0.66
SS18-223	ENST00000583595	ZFP91	Q96JP5	570 aa	Predicted RBP	10.92	□□□□□ -0.66
SS18-223	ENST00000583595	OCEL1	Q9H607	264 aa		10.92	□□□□□ -0.66
SS18-223	ENST00000583595	RGL2	O15211	777 aa		10.9	□□□□□ -0.66
SS18-223	ENST00000583595	TAOK2	Q9UL54	1235 aa		10.89	□□□□□ -0.67
SS18-223	ENST00000583595	MAMSTR	Q6ZN01	415 aa		10.88	□□□□□ -0.67
SS18-223	ENST00000583595	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
SS18-223	ENST00000583595	EFCAB3	Q8N7B9	438 aa		10.85	□□□□□ -0.67
SS18-223	ENST00000583595	SCUBE2	Q9NQ36	999 aa		10.85	□□□□□ -0.67
SS18-223	ENST00000583595	PDCD7	Q8N8D1	485 aa	Known RBP	10.84	□□□□□ -0.67
SS18-223	ENST00000583595	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.83	□□□□□ -0.68
SS18-223	ENST00000583595	STK25	O00506	426 aa		10.81	□□□□□ -0.68
SS18-223	ENST00000583595	ILDR1	Q86SU0	546 aa	Predicted RBP	10.81	□□□□□ -0.68
SS18-223	ENST00000583595	STK24	Q9Y6E0	443 aa		10.81	□□□□□ -0.68
SS18-223	ENST00000583595	DPY19L2	Q6NUT2	758 aa		10.78	□□□□□ -0.68
SS18-223	ENST00000583595	SOX12	O15370	315 aa		10.76	□□□□□ -0.69
SS18-223	ENST00000583595	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.76	□□□□□ -0.69
SS18-223	ENST00000583595	PHF8	Q9UPP1	1060 aa		10.73	□□□□□ -0.69
SS18-223	ENST00000583595	SLAIN1	Q8ND83	568 aa		10.71	□□□□□ -0.69
SS18-223	ENST00000583595	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.7	□□□□□ -0.7
SS18-223	ENST00000583595		G3V3G9	751 aa		10.69	□□□□□ -0.7
SS18-223	ENST00000583595	NLRP6	P59044	892 aa		10.69	□□□□□ -0.7
SS18-223	ENST00000583595	C3orf67	Q6ZVT6	689 aa		10.69	□□□□□ -0.7
SS18-223	ENST00000583595	MS4A4A	Q96JQ5	239 aa		10.69	□□□□□ -0.7
SS18-223	ENST00000583595	BOLA1	Q9Y3E2	137 aa		10.69	□□□□□ -0.7
SS18-223	ENST00000583595	CHGA	P10645	457 aa	Known RBP	10.68	□□□□□ -0.7
SS18-223	ENST00000583595	HS6ST3	Q8IZP7	471 aa		10.67	□□□□□ -0.7
SS18-223	ENST00000583595	MFRP	Q9BY79	579 aa		10.67	□□□□□ -0.7
SS18-223	ENST00000583595	FBXO22	Q8NEZ5	403 aa		10.65	□□□□□ -0.7
SS18-223	ENST00000583595	DCAF8L2	P0C7V8	631 aa		10.62	□□□□□ -0.71
SS18-223	ENST00000583595	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.62	□□□□□ -0.71
SS18-223	ENST00000583595	MICALL2	Q8IY33	904 aa		10.61	□□□□□ -0.71
SS18-223	ENST00000583595	FAM163A	Q96GL9	167 aa	Predicted RBP	10.6	□□□□□ -0.71
SS18-223	ENST00000583595	PLCB2	Q00722	1185 aa		10.59	□□□□□ -0.71
SS18-223	ENST00000583595	DNAJC5	Q9H3Z4	198 aa		10.54	□□□□□ -0.72
SS18-223	ENST00000583595	NKX1-1	Q15270	411 aa	Predicted RBP	10.53	□□□□□ -0.72
SS18-223	ENST00000583595	SNPH	O15079	494 aa		10.52	□□□□□ -0.73
SS18-223	ENST00000583595	LCE2D	Q5TA82	110 aa	Predicted RBP	10.52	□□□□□ -0.73
SS18-223	ENST00000583595	PPP1R37	O75864	691 aa		10.51	□□□□□ -0.73
SS18-223	ENST00000583595	PRKCSH	P14314	528 aa	Predicted RBP	10.5	□□□□□ -0.73
SS18-223	ENST00000583595	TMEM92	Q6UXU6	159 aa		10.5	□□□□□ -0.73
SS18-223	ENST00000583595	POTEM	A6NI47	508 aa		10.49	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms