RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 RASEFQ8IZ41 740 aa13.87□□□□□ -0.19
SMCHD1-206ENST00000581631 POTEB2H3BUK9 544 aa13.86□□□□□ -0.19
SMCHD1-206ENST00000581631 KIF12Q96FN5 646 aa13.85□□□□□ -0.19
SMCHD1-206ENST00000581631 ATMINO43313 823 aaPredicted RBP13.84□□□□□ -0.19
SMCHD1-206ENST00000581631 PLEKHG5O94827 1062 aa13.84□□□□□ -0.19
SMCHD1-206ENST00000581631 PLCD3Q8N3E9 789 aa13.78□□□□□ -0.2
SMCHD1-206ENST00000581631 NUBP1P53384 320 aa13.77□□□□□ -0.21
SMCHD1-206ENST00000581631 OTUD5Q96G74 571 aa13.77□□□□□ -0.21
SMCHD1-206ENST00000581631 MAP3K13O43283 966 aa13.75□□□□□ -0.21
SMCHD1-206ENST00000581631 TRPC6Q9Y210 931 aa13.75□□□□□ -0.21
SMCHD1-206ENST00000581631 ATN1P54259 1190 aaPredicted RBP13.73□□□□□ -0.21
SMCHD1-206ENST00000581631 METRNQ9UJH8 293 aa13.73□□□□□ -0.21
SMCHD1-206ENST00000581631 SLC39A7Q92504 469 aa13.72□□□□□ -0.21
SMCHD1-206ENST00000581631 BMP2KQ9NSY1 1161 aaPredicted RBP13.71□□□□□ -0.21
SMCHD1-206ENST00000581631 ZBTB47Q9UFB7 747 aaPredicted RBP13.7□□□□□ -0.22
SMCHD1-206ENST00000581631 C7P10643 843 aa13.69□□□□□ -0.22
SMCHD1-206ENST00000581631 POTEJP0CG39 1038 aa13.68□□□□□ -0.22
SMCHD1-206ENST00000581631 TIE1P35590 1138 aa13.66□□□□□ -0.22
SMCHD1-206ENST00000581631 POTEFA5A3E0 1075 aa13.64□□□□□ -0.23
SMCHD1-206ENST00000581631 SGIP1Q9BQI5 828 aa13.64□□□□□ -0.23
SMCHD1-206ENST00000581631 TTLL13PA6NNM8 815 aa13.59□□□□□ -0.23
SMCHD1-206ENST00000581631 FAM212AQ96EL1 285 aa13.57□□□□□ -0.24
SMCHD1-206ENST00000581631 FBXO3Q9UK99 471 aa13.57□□□□□ -0.24
SMCHD1-206ENST00000581631 PCDHB13Q9Y5F0 798 aa13.57□□□□□ -0.24
SMCHD1-206ENST00000581631 IFNL1Q8IU54 200 aa13.54□□□□□ -0.24
SMCHD1-206ENST00000581631 COLQQ9Y215 455 aaPredicted RBP13.49□□□□□ -0.25
SMCHD1-206ENST00000581631 VASPP50552 380 aaPredicted RBP13.48□□□□□ -0.25
SMCHD1-206ENST00000581631 TRIM35Q9UPQ4 493 aa13.48□□□□□ -0.25
SMCHD1-206ENST00000581631 MAMSTRQ6ZN01 415 aa13.47□□□□□ -0.25
SMCHD1-206ENST00000581631 IER5LQ5T953 404 aa13.45□□□□□ -0.26
SMCHD1-206ENST00000581631 DCAF8Q5TAQ9 597 aa13.42□□□□□ -0.26
SMCHD1-206ENST00000581631 PYGBP11216 843 aa13.41□□□□□ -0.26
SMCHD1-206ENST00000581631 LCE2DQ5TA82 110 aaPredicted RBP13.39□□□□□ -0.27
SMCHD1-206ENST00000581631 TMEM106CQ9BVX2 250 aa13.39□□□□□ -0.27
SMCHD1-206ENST00000581631 SCUBE2Q9NQ36 999 aa13.39□□□□□ -0.27
SMCHD1-206ENST00000581631 POTEMA6NI47 508 aa13.35□□□□□ -0.27
SMCHD1-206ENST00000581631 SEC24BO95487 1268 aa13.35□□□□□ -0.27
SMCHD1-206ENST00000581631 PCDHB8Q9UN66 801 aa13.33□□□□□ -0.28
SMCHD1-206ENST00000581631 IRX5P78411 483 aaPredicted RBP13.32□□□□□ -0.28
SMCHD1-206ENST00000581631 POTEGQ6S5H5 508 aa13.31□□□□□ -0.28
SMCHD1-206ENST00000581631 KLHL34Q8N239 644 aa13.31□□□□□ -0.28
SMCHD1-206ENST00000581631 GSE1Q14687 1217 aa13.3□□□□□ -0.28
SMCHD1-206ENST00000581631 CHRM1P11229 460 aaPredicted RBP13.28□□□□□ -0.28
SMCHD1-206ENST00000581631 IFNLR1Q8IU57 520 aaPredicted RBP13.27□□□□□ -0.29
SMCHD1-206ENST00000581631 PLCG2P16885 1265 aa13.23□□□□□ -0.29
SMCHD1-206ENST00000581631 ZNF467Q7Z7K2 595 aaPredicted RBP13.22□□□□□ -0.29
SMCHD1-206ENST00000581631 FAM163AQ96GL9 167 aaPredicted RBP13.19□□□□□ -0.3
SMCHD1-206ENST00000581631 OCEL1Q9H607 264 aa13.19□□□□□ -0.3
SMCHD1-206ENST00000581631 SPOCK2Q92563 424 aa13.18□□□□□ -0.3
SMCHD1-206ENST00000581631 PLSCR2Q9NRY7 297 aa13.16□□□□□ -0.3
SMCHD1-206ENST00000581631 PDCD7Q8N8D1 485 aaKnown RBP13.15□□□□□ -0.3
SMCHD1-206ENST00000581631 SLAIN1Q8ND83 568 aa13.13□□□□□ -0.31
SMCHD1-206ENST00000581631 PCDH10Q9P2E7 1040 aa13.12□□□□□ -0.31
SMCHD1-206ENST00000581631 PSEN1P49768 467 aa13.11□□□□□ -0.31
SMCHD1-206ENST00000581631 ILDR1Q86SU0 546 aaPredicted RBP13.08□□□□□ -0.32
SMCHD1-206ENST00000581631 PDAP1Q13442 181 aaKnown RBP13.05□□□□□ -0.32
SMCHD1-206ENST00000581631 CIZ1Q9ULV3 898 aaPredicted RBP13.05□□□□□ -0.32
SMCHD1-206ENST00000581631 ST18O60284 1047 aa13.03□□□□□ -0.32
SMCHD1-206ENST00000581631 MKRN3Q13064 507 aaKnown RBP13.02□□□□□ -0.33
SMCHD1-206ENST00000581631 GOLGA2Q08379 1002 aa12.99□□□□□ -0.33
SMCHD1-206ENST00000581631 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.99□□□□□ -0.33
SMCHD1-206ENST00000581631 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.332e-8■■■□□ 14.9
SMCHD1-206ENST00000581631 L3MBTL3Q96JM7 780 aaPredicted RBP12.95□□□□□ -0.34
SMCHD1-206ENST00000581631 TRIM41Q8WV44 630 aa12.94□□□□□ -0.34
SMCHD1-206ENST00000581631 CABP2Q9NPB3 220 aa12.94□□□□□ -0.34
SMCHD1-206ENST00000581631 DPY19L2Q6NUT2 758 aa12.92□□□□□ -0.34
SMCHD1-206ENST00000581631 CDAN1Q8IWY9 1227 aa12.9□□□□□ -0.34
SMCHD1-206ENST00000581631 C3orf67Q6ZVT6 689 aa12.88□□□□□ -0.35
SMCHD1-206ENST00000581631 TMEM121BQ9BXQ6 578 aaPredicted RBP12.88□□□□□ -0.35
SMCHD1-206ENST00000581631 SNPHO15079 494 aa12.87□□□□□ -0.35
SMCHD1-206ENST00000581631 RNF25Q96BH1 459 aaPredicted RBP12.87□□□□□ -0.35
SMCHD1-206ENST00000581631 EFCAB3Q8N7B9 438 aa12.81□□□□□ -0.36
SMCHD1-206ENST00000581631 BOLA1Q9Y3E2 137 aa12.81□□□□□ -0.36
SMCHD1-206ENST00000581631 RIOK3O14730 519 aaKnown RBP12.77□□□□□ -0.37
SMCHD1-206ENST00000581631 MARVELD3Q96A59 401 aa12.77□□□□□ -0.37
SMCHD1-206ENST00000581631 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.74□□□□□ -0.37
SMCHD1-206ENST00000581631 ZFP91Q96JP5 570 aaPredicted RBP12.74□□□□□ -0.37
SMCHD1-206ENST00000581631 VGFO15240 615 aaPredicted RBP12.72□□□□□ -0.37
SMCHD1-206ENST00000581631 HOXB3P14651 431 aaPredicted RBP12.72□□□□□ -0.37
SMCHD1-206ENST00000581631 MS4A4AQ96JQ5 239 aa12.71□□□□□ -0.37
SMCHD1-206ENST00000581631 POTEB3A0JP26 581 aa12.69□□□□□ -0.38
SMCHD1-206ENST00000581631 POTEBQ6S5H4 581 aa12.69□□□□□ -0.38
SMCHD1-206ENST00000581631 SOX12O15370 315 aa12.68□□□□□ -0.38
SMCHD1-206ENST00000581631 G3V3G9 751 aa12.67□□□□□ -0.38
SMCHD1-206ENST00000581631 EMP3P54852 163 aa12.66□□□□□ -0.38
SMCHD1-206ENST00000581631 TMEM92Q6UXU6 159 aa12.66□□□□□ -0.38
SMCHD1-206ENST00000581631 MICALL2Q8IY33 904 aa12.66□□□□□ -0.38
SMCHD1-206ENST00000581631 PHF8Q9UPP1 1060 aa12.64□□□□□ -0.39
SMCHD1-206ENST00000581631 HS3ST6Q96QI5 342 aa12.63□□□□□ -0.39
SMCHD1-206ENST00000581631 SPNS2Q8IVW8 549 aa12.62□□□□□ -0.39
SMCHD1-206ENST00000581631 KRTAP3-3Q9BYR6 98 aa12.6□□□□□ -0.39
SMCHD1-206ENST00000581631 KRTAP3-2Q9BYR7 98 aa12.6□□□□□ -0.39
SMCHD1-206ENST00000581631 HOXB1P14653 301 aaPredicted RBP12.59□□□□□ -0.39
SMCHD1-206ENST00000581631 FBXO22Q8NEZ5 403 aa12.59□□□□□ -0.39
SMCHD1-206ENST00000581631 FAM205CA6NFA0 338 aa12.58□□□□□ -0.4
SMCHD1-206ENST00000581631 MMRN1Q13201 1228 aa12.57□□□□□ -0.4
SMCHD1-206ENST00000581631 BCL11BQ9C0K0 894 aaPredicted RBP12.56□□□□□ -0.4
SMCHD1-206ENST00000581631 DOK7Q18PE1 504 aa12.55□□□□□ -0.4
SMCHD1-206ENST00000581631 PKD2Q13563 968 aa12.53□□□□□ -0.4
SMCHD1-206ENST00000581631 MFRPQ9BY79 579 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms