RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 NUBP1P53384 320 aa16.22■□□□□ 0.19
SMCHD1-202ENST00000577300 POTEIP0CG38 1075 aa16.19■□□□□ 0.18
SMCHD1-202ENST00000577300 DCBLD2Q96PD2 775 aa16.17■□□□□ 0.18
SMCHD1-202ENST00000577300 KIF12Q96FN5 646 aa16.12■□□□□ 0.17
SMCHD1-202ENST00000577300 MS4A3Q96HJ5 214 aa16.12■□□□□ 0.17
SMCHD1-202ENST00000577300 FAM212AQ96EL1 285 aa16.1■□□□□ 0.17
SMCHD1-202ENST00000577300 KLHL34Q8N239 644 aa16.08■□□□□ 0.16
SMCHD1-202ENST00000577300 MAP3K13O43283 966 aa16.02■□□□□ 0.16
SMCHD1-202ENST00000577300 IFNLR1Q8IU57 520 aaPredicted RBP16■□□□□ 0.15
SMCHD1-202ENST00000577300 DCAF8Q5TAQ9 597 aa15.98■□□□□ 0.15
SMCHD1-202ENST00000577300 SGIP1Q9BQI5 828 aa15.98■□□□□ 0.15
SMCHD1-202ENST00000577300 ASTLQ6HA08 431 aaPredicted RBP15.96■□□□□ 0.15
SMCHD1-202ENST00000577300 ATMINO43313 823 aaPredicted RBP15.92■□□□□ 0.14
SMCHD1-202ENST00000577300 GSE1Q14687 1217 aa15.91■□□□□ 0.14
SMCHD1-202ENST00000577300 LHX8Q68G74 356 aa15.91■□□□□ 0.14
SMCHD1-202ENST00000577300 PCDHB13Q9Y5F0 798 aa15.91■□□□□ 0.14
SMCHD1-202ENST00000577300 SPOCK2Q92563 424 aa15.9■□□□□ 0.14
SMCHD1-202ENST00000577300 PELP1Q8IZL8 1130 aaKnown RBP15.88■□□□□ 0.13
SMCHD1-202ENST00000577300 TRPC6Q9Y210 931 aa15.88■□□□□ 0.13
SMCHD1-202ENST00000577300 TIE1P35590 1138 aa15.87■□□□□ 0.13
SMCHD1-202ENST00000577300 BMP2KQ9NSY1 1161 aaPredicted RBP15.85■□□□□ 0.13
SMCHD1-202ENST00000577300 PYGBP11216 843 aa15.84■□□□□ 0.13
SMCHD1-202ENST00000577300 IFNL1Q8IU54 200 aa15.83■□□□□ 0.12
SMCHD1-202ENST00000577300 ATN1P54259 1190 aaPredicted RBP15.82■□□□□ 0.12
SMCHD1-202ENST00000577300 SLC39A7Q92504 469 aa15.8■□□□□ 0.12
SMCHD1-202ENST00000577300 TTLL13PA6NNM8 815 aa15.77■□□□□ 0.12
SMCHD1-202ENST00000577300 C7P10643 843 aa15.77■□□□□ 0.12
SMCHD1-202ENST00000577300 CHRM1P11229 460 aaPredicted RBP15.76■□□□□ 0.11
SMCHD1-202ENST00000577300 METRNQ9UJH8 293 aa15.74■□□□□ 0.11
SMCHD1-202ENST00000577300 CIZ1Q9ULV3 898 aaPredicted RBP15.72■□□□□ 0.11
SMCHD1-202ENST00000577300 ZNF467Q7Z7K2 595 aaPredicted RBP15.68■□□□□ 0.1
SMCHD1-202ENST00000577300 PCDHB8Q9UN66 801 aa15.68■□□□□ 0.1
SMCHD1-202ENST00000577300 TMEM106CQ9BVX2 250 aa15.67■□□□□ 0.1
SMCHD1-202ENST00000577300 POTEB2H3BUK9 544 aa15.66■□□□□ 0.1
SMCHD1-202ENST00000577300 TRIM35Q9UPQ4 493 aa15.66■□□□□ 0.1
SMCHD1-202ENST00000577300 IER5LQ5T953 404 aa15.61■□□□□ 0.09
SMCHD1-202ENST00000577300 TRIM41Q8WV44 630 aa15.6■□□□□ 0.09
SMCHD1-202ENST00000577300 POTEFA5A3E0 1075 aa15.58■□□□□ 0.08
SMCHD1-202ENST00000577300 OTUD5Q96G74 571 aa15.53■□□□□ 0.08
SMCHD1-202ENST00000577300 SEC24BO95487 1268 aa15.52■□□□□ 0.08
SMCHD1-202ENST00000577300 COLQQ9Y215 455 aaPredicted RBP15.51■□□□□ 0.07
SMCHD1-202ENST00000577300 POTEJP0CG39 1038 aa15.5■□□□□ 0.07
SMCHD1-202ENST00000577300 PSEN1P49768 467 aa15.5■□□□□ 0.07
SMCHD1-202ENST00000577300 PDAP1Q13442 181 aaKnown RBP15.49■□□□□ 0.07
SMCHD1-202ENST00000577300 MAMSTRQ6ZN01 415 aa15.46■□□□□ 0.07
SMCHD1-202ENST00000577300 IRX5P78411 483 aaPredicted RBP15.45■□□□□ 0.06
SMCHD1-202ENST00000577300 PLCG2P16885 1265 aa15.41■□□□□ 0.06
SMCHD1-202ENST00000577300 GOLGA2Q08379 1002 aa15.39■□□□□ 0.05
SMCHD1-202ENST00000577300 OCEL1Q9H607 264 aa15.39■□□□□ 0.05
SMCHD1-202ENST00000577300 SCUBE2Q9NQ36 999 aa15.38■□□□□ 0.05
SMCHD1-202ENST00000577300 MKRN3Q13064 507 aaKnown RBP15.36■□□□□ 0.05
SMCHD1-202ENST00000577300 RIOK3O14730 519 aaKnown RBP15.34■□□□□ 0.05
SMCHD1-202ENST00000577300 RNF25Q96BH1 459 aaPredicted RBP15.34■□□□□ 0.05
SMCHD1-202ENST00000577300 CABP2Q9NPB3 220 aa15.3■□□□□ 0.04
SMCHD1-202ENST00000577300 VGFO15240 615 aaPredicted RBP15.27■□□□□ 0.04
SMCHD1-202ENST00000577300 PDCD7Q8N8D1 485 aaKnown RBP15.27■□□□□ 0.04
SMCHD1-202ENST00000577300 ILDR1Q86SU0 546 aaPredicted RBP15.26■□□□□ 0.03
SMCHD1-202ENST00000577300 PKD2Q13563 968 aa15.25■□□□□ 0.03
SMCHD1-202ENST00000577300 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.25■□□□□ 0.033e-7■■■□□ 17.6
SMCHD1-202ENST00000577300 ECM2O94769 699 aaPredicted RBP15.24■□□□□ 0.03
SMCHD1-202ENST00000577300 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.21■□□□□ 0.03
SMCHD1-202ENST00000577300 ZFP91Q96JP5 570 aaPredicted RBP15.21■□□□□ 0.03
SMCHD1-202ENST00000577300 TAOK2Q9UL54 1235 aa15.2■□□□□ 0.02
SMCHD1-202ENST00000577300 EFCAB3Q8N7B9 438 aa15.16■□□□□ 0.02
SMCHD1-202ENST00000577300 L3MBTL3Q96JM7 780 aaPredicted RBP15.16■□□□□ 0.02
SMCHD1-202ENST00000577300 SLAIN1Q8ND83 568 aa15.12■□□□□ 0.01
SMCHD1-202ENST00000577300 RGL2O15211 777 aa15.11■□□□□ 0.01
SMCHD1-202ENST00000577300 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.1■□□□□ 0.01
SMCHD1-202ENST00000577300 DPY19L2Q6NUT2 758 aa15.09■□□□□ 0.01
SMCHD1-202ENST00000577300 SOX12O15370 315 aa15.08■□□□□ 0
SMCHD1-202ENST00000577300 BCL11BQ9C0K0 894 aaPredicted RBP15.07■□□□□ 0
SMCHD1-202ENST00000577300 C3orf67Q6ZVT6 689 aa15.05■□□□□ -0
SMCHD1-202ENST00000577300 STK24Q9Y6E0 443 aa15.03■□□□□ -0
SMCHD1-202ENST00000577300 BOLA1Q9Y3E2 137 aa15.02■□□□□ -0
SMCHD1-202ENST00000577300 STK25O00506 426 aa15.01□□□□□ -0.01
SMCHD1-202ENST00000577300 G3V3G9 751 aa15□□□□□ -0.01
SMCHD1-202ENST00000577300 LCE2DQ5TA82 110 aaPredicted RBP14.99□□□□□ -0.01
SMCHD1-202ENST00000577300 FAM163AQ96GL9 167 aaPredicted RBP14.99□□□□□ -0.01
SMCHD1-202ENST00000577300 PHF8Q9UPP1 1060 aa14.98□□□□□ -0.01
SMCHD1-202ENST00000577300 MS4A4AQ96JQ5 239 aa14.96□□□□□ -0.01
SMCHD1-202ENST00000577300 TMEM121BQ9BXQ6 578 aaPredicted RBP14.96□□□□□ -0.01
SMCHD1-202ENST00000577300 POTEMA6NI47 508 aa14.94□□□□□ -0.02
SMCHD1-202ENST00000577300 NLRP6P59044 892 aa14.93□□□□□ -0.02
SMCHD1-202ENST00000577300 POTEGQ6S5H5 508 aa14.92□□□□□ -0.02
SMCHD1-202ENST00000577300 SNPHO15079 494 aa14.91□□□□□ -0.02
SMCHD1-202ENST00000577300 FBXO22Q8NEZ5 403 aa14.91□□□□□ -0.02
SMCHD1-202ENST00000577300 MFRPQ9BY79 579 aa14.89□□□□□ -0.03
SMCHD1-202ENST00000577300 MICALL2Q8IY33 904 aa14.88□□□□□ -0.03
SMCHD1-202ENST00000577300 ST18O60284 1047 aa14.85□□□□□ -0.03
SMCHD1-202ENST00000577300 HS6ST3Q8IZP7 471 aa14.83□□□□□ -0.04
SMCHD1-202ENST00000577300 PCDH10Q9P2E7 1040 aa14.75□□□□□ -0.05
SMCHD1-202ENST00000577300 CHGAP10645 457 aaKnown RBP14.74□□□□□ -0.05
SMCHD1-202ENST00000577300 TMEM92Q6UXU6 159 aa14.74□□□□□ -0.05
SMCHD1-202ENST00000577300 DNAJC5Q9H3Z4 198 aa14.72□□□□□ -0.05
SMCHD1-202ENST00000577300 HOXB3P14651 431 aaPredicted RBP14.69□□□□□ -0.06
SMCHD1-202ENST00000577300 DOK7Q18PE1 504 aa14.65□□□□□ -0.06
SMCHD1-202ENST00000577300 PPP1R37O75864 691 aa14.63□□□□□ -0.07
SMCHD1-202ENST00000577300 MARVELD3Q96A59 401 aa14.61□□□□□ -0.07
SMCHD1-202ENST00000577300 NKX1-1Q15270 411 aaPredicted RBP14.59□□□□□ -0.07
SMCHD1-202ENST00000577300 ZNF710Q8N1W2 664 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms