RNA–Protein interactions for RNA: ENST00000575909.1

TOM1L1-222, Transcript of target of myb1 like 1 membrane trafficking protein, human

TSL 3

Gene TOM1L1, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1L1-222	ENST00000575909	BCAN	Q96GW7	911 aa		14.4	□□□□□ -0.1
TOM1L1-222	ENST00000575909	HS6ST3	Q8IZP7	471 aa		14.38	□□□□□ -0.11
TOM1L1-222	ENST00000575909	FAM212A	Q96EL1	285 aa		14.38	□□□□□ -0.11
TOM1L1-222	ENST00000575909	MNX1	P50219	401 aa	Predicted RBP	14.37	□□□□□ -0.11
TOM1L1-222	ENST00000575909	TAOK2	Q9UL54	1235 aa		14.37	□□□□□ -0.11
TOM1L1-222	ENST00000575909	RNF25	Q96BH1	459 aa	Predicted RBP	14.35	□□□□□ -0.11
TOM1L1-222	ENST00000575909	KDM2A	Q9Y2K7	1162 aa		14.33	□□□□□ -0.12
TOM1L1-222	ENST00000575909	RIOK3	O14730	519 aa	Known RBP	14.31	□□□□□ -0.12
TOM1L1-222	ENST00000575909	DNAJC5	Q9H3Z4	198 aa		14.31	□□□□□ -0.12
TOM1L1-222	ENST00000575909	PITPNM1	O00562	1244 aa		14.28	□□□□□ -0.12
TOM1L1-222	ENST00000575909	CHRM1	P11229	460 aa	Predicted RBP	14.28	□□□□□ -0.12
TOM1L1-222	ENST00000575909	TSHZ2	Q9NRE2	1034 aa		14.27	□□□□□ -0.13
TOM1L1-222	ENST00000575909	RASEF	Q8IZ41	740 aa		14.25	□□□□□ -0.13
TOM1L1-222	ENST00000575909	VGF	O15240	615 aa	Predicted RBP	14.22	□□□□□ -0.13
TOM1L1-222	ENST00000575909	STK25	O00506	426 aa		14.16	□□□□□ -0.14
TOM1L1-222	ENST00000575909	SGIP1	Q9BQI5	828 aa		14.16	□□□□□ -0.14
TOM1L1-222	ENST00000575909	NKX1-1	Q15270	411 aa	Predicted RBP	14.13	□□□□□ -0.15
TOM1L1-222	ENST00000575909	PYGB	P11216	843 aa		14.11	□□□□□ -0.15
TOM1L1-222	ENST00000575909	GTPBP6	O43824	516 aa	Predicted RBP	14.08	□□□□□ -0.16
TOM1L1-222	ENST00000575909	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	14.06	□□□□□ -0.16
TOM1L1-222	ENST00000575909	ZFP91	Q96JP5	570 aa	Predicted RBP	14.06	□□□□□ -0.16
TOM1L1-222	ENST00000575909	BCL11B	Q9C0K0	894 aa	Predicted RBP	14.05	□□□□□ -0.16
TOM1L1-222	ENST00000575909	RYDEN	Q9NUL5	291 aa	Known RBP	14.05	□□□□□ -0.16
TOM1L1-222	ENST00000575909	STK24	Q9Y6E0	443 aa		14.05	□□□□□ -0.16
TOM1L1-222	ENST00000575909	CHADL	Q6NUI6	762 aa		14.04	□□□□□ -0.16
TOM1L1-222	ENST00000575909	FARP1	Q9Y4F1	1045 aa	Predicted RBP	14.02	□□□□□ -0.17
TOM1L1-222	ENST00000575909	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.98	□□□□□ -0.17
TOM1L1-222	ENST00000575909	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.98	□□□□□ -0.17
TOM1L1-222	ENST00000575909	PRKCSH	P14314	528 aa	Predicted RBP	13.96	□□□□□ -0.17
TOM1L1-222	ENST00000575909	PRKAR2A	P13861	404 aa	Known RBP	13.93	□□□□□ -0.18
TOM1L1-222	ENST00000575909	NBR1	Q14596	966 aa		13.91	□□□□□ -0.18
TOM1L1-222	ENST00000575909	FXR2	P51116	673 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
TOM1L1-222	ENST00000575909	PDAP1	Q13442	181 aa	Known RBP	13.89	□□□□□ -0.19
TOM1L1-222	ENST00000575909	TPRN	Q4KMQ1	711 aa		13.89	□□□□□ -0.19
TOM1L1-222	ENST00000575909	CCDC61	Q9Y6R9	512 aa		13.88	□□□□□ -0.19
TOM1L1-222	ENST00000575909	ZNF579	Q8NAF0	562 aa	Known RBP	13.84	□□□□□ -0.19
TOM1L1-222	ENST00000575909	PCDHB8	Q9UN66	801 aa		13.84	□□□□□ -0.19
TOM1L1-222	ENST00000575909	PCDHB13	Q9Y5F0	798 aa		13.84	□□□□□ -0.19
TOM1L1-222	ENST00000575909	PAK3	O75914	559 aa	Predicted RBP	13.82	□□□□□ -0.2
TOM1L1-222	ENST00000575909	PSEN1	P49768	467 aa		13.78	□□□□□ -0.2
TOM1L1-222	ENST00000575909	CHRDL2	Q6WN34	429 aa		13.76	□□□□□ -0.21
TOM1L1-222	ENST00000575909	PIP4P2	Q8N4L2	257 aa		13.73	□□□□□ -0.21
TOM1L1-222	ENST00000575909	IFNL1	Q8IU54	200 aa		13.71	□□□□□ -0.21
TOM1L1-222	ENST00000575909	KIF12	Q96FN5	646 aa		13.7	□□□□□ -0.22
TOM1L1-222	ENST00000575909	P3H3	Q8IVL6	736 aa		13.69	□□□□□ -0.22
TOM1L1-222	ENST00000575909	MFRP	Q9BY79	579 aa		13.69	□□□□□ -0.22
TOM1L1-222	ENST00000575909	MAP3K13	O43283	966 aa		13.68	□□□□□ -0.22
TOM1L1-222	ENST00000575909	WDR70	Q9NW82	654 aa		13.65	□□□□□ -0.22
TOM1L1-222	ENST00000575909	SOX12	O15370	315 aa		13.63	□□□□□ -0.23
TOM1L1-222	ENST00000575909	CADPS2	Q86UW7	1296 aa		13.63	□□□□□ -0.23
TOM1L1-222	ENST00000575909	NLRP6	P59044	892 aa		13.61	□□□□□ -0.23
TOM1L1-222	ENST00000575909	EFCAB3	Q8N7B9	438 aa		13.6	□□□□□ -0.23
TOM1L1-222	ENST00000575909	CABP2	Q9NPB3	220 aa		13.6	□□□□□ -0.23
TOM1L1-222	ENST00000575909	ZRANB1	Q9UGI0	708 aa		13.6	□□□□□ -0.23
TOM1L1-222	ENST00000575909	CD44	P16070	742 aa	Known RBP	13.57	□□□□□ -0.24
TOM1L1-222	ENST00000575909	FBXO22	Q8NEZ5	403 aa		13.57	□□□□□ -0.24
TOM1L1-222	ENST00000575909	PHF8	Q9UPP1	1060 aa		13.54	□□□□□ -0.24
TOM1L1-222	ENST00000575909	KCNV2	Q8TDN2	545 aa		13.53	□□□□□ -0.24
TOM1L1-222	ENST00000575909	PPP1R37	O75864	691 aa		13.52	□□□□□ -0.25
TOM1L1-222	ENST00000575909	PHF12	Q96QT6	1004 aa		13.5	□□□□□ -0.25
TOM1L1-222	ENST00000575909	GOLGA2	Q08379	1002 aa		13.44	□□□□□ -0.26
TOM1L1-222	ENST00000575909	ARHGEF1	Q92888	912 aa	Known RBP	13.43	□□□□□ -0.26
TOM1L1-222	ENST00000575909	TMEM106C	Q9BVX2	250 aa		13.43	□□□□□ -0.26
TOM1L1-222	ENST00000575909	E2F4	Q16254	413 aa		13.41	□□□□□ -0.26
TOM1L1-222	ENST00000575909	POTEH	Q6S545	545 aa		13.4	□□□□□ -0.26
TOM1L1-222	ENST00000575909	C19orf67	A6NJJ6	358 aa		13.39	□□□□□ -0.27
TOM1L1-222	ENST00000575909	MS4A4A	Q96JQ5	239 aa		13.39	□□□□□ -0.27
TOM1L1-222	ENST00000575909	PDE4A	P27815	886 aa		13.37	□□□□□ -0.27
TOM1L1-222	ENST00000575909	MS4A3	Q96HJ5	214 aa		13.37	□□□□□ -0.27
TOM1L1-222	ENST00000575909	TULP1	O00294	542 aa	Predicted RBP	13.36	□□□□□ -0.27
TOM1L1-222	ENST00000575909	MKRN3	Q13064	507 aa	Known RBP	13.36	□□□□□ -0.27
TOM1L1-222	ENST00000575909	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
TOM1L1-222	ENST00000575909	NCKAP5L	Q9HCH0	1330 aa		13.35	□□□□□ -0.27
TOM1L1-222	ENST00000575909	LMOD2	Q6P5Q4	547 aa		13.34	□□□□□ -0.27
TOM1L1-222	ENST00000575909	TRPC6	Q9Y210	931 aa		13.33	□□□□□ -0.28
TOM1L1-222	ENST00000575909	TIE1	P35590	1138 aa		13.32	□□□□□ -0.28
TOM1L1-222	ENST00000575909	LARP6	Q9BRS8	491 aa	Known RBP	13.32	□□□□□ -0.28
TOM1L1-222	ENST00000575909	MFSD10	Q14728	455 aa		13.31	□□□□□ -0.28
TOM1L1-222	ENST00000575909	CRISPLD2	Q9H0B8	497 aa		13.3	□□□□□ -0.28
TOM1L1-222	ENST00000575909	DDX27	Q96GQ7	796 aa	Known RBP	13.27	□□□□□ -0.29
TOM1L1-222	ENST00000575909	TTLL13P	A6NNM8	815 aa		13.26	□□□□□ -0.29
TOM1L1-222	ENST00000575909	ILDR1	Q86SU0	546 aa	Predicted RBP	13.25	□□□□□ -0.29
TOM1L1-222	ENST00000575909	TESPA1	A2RU30	521 aa	Predicted RBP	13.23	□□□□□ -0.29
TOM1L1-222	ENST00000575909	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.23	□□□□□ -0.29	1e-7	■■□□□ 11.6
TOM1L1-222	ENST00000575909	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.23	□□□□□ -0.29
TOM1L1-222	ENST00000575909	SEMA3E	O15041	775 aa		13.22	□□□□□ -0.29
TOM1L1-222	ENST00000575909	CLCN6	P51797	869 aa		13.21	□□□□□ -0.29
TOM1L1-222	ENST00000575909	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.21	□□□□□ -0.29
TOM1L1-222	ENST00000575909	CAMK2B	Q13554	666 aa		13.2	□□□□□ -0.3
TOM1L1-222	ENST00000575909	SMYD5	Q6GMV2	418 aa		13.18	□□□□□ -0.3
TOM1L1-222	ENST00000575909	TRIM35	Q9UPQ4	493 aa		13.17	□□□□□ -0.3
TOM1L1-222	ENST00000575909	GPHN	Q9NQX3	736 aa	Predicted RBP	13.15	□□□□□ -0.3
TOM1L1-222	ENST00000575909	GALR2	O43603	387 aa	Predicted RBP	13.14	□□□□□ -0.31
TOM1L1-222	ENST00000575909	ZC3H15	Q8WU90	426 aa	Known RBP	13.14	□□□□□ -0.31
TOM1L1-222	ENST00000575909	PPP1R15B	Q5SWA1	713 aa		13.12	□□□□□ -0.31
TOM1L1-222	ENST00000575909	HAX1	O00165	279 aa		13.1	□□□□□ -0.31
TOM1L1-222	ENST00000575909	TMEM132A	Q24JP5	1023 aa		13.09	□□□□□ -0.31
TOM1L1-222	ENST00000575909	DPY19L2	Q6NUT2	758 aa		13.07	□□□□□ -0.32
TOM1L1-222	ENST00000575909	MICALL2	Q8IY33	904 aa		13.06	□□□□□ -0.32
TOM1L1-222	ENST00000575909	PDCD7	Q8N8D1	485 aa	Known RBP	13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms