RNA–Protein interactions for RNA: ENST00000572787.1

TOPBP1-210, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 4

Gene TOPBP1, Length 402 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-210ENST00000572787 ZBTB12Q9Y330 459 aaPredicted RBP8.4□□□□□ -1.06
TOPBP1-210ENST00000572787 HRCP23327 699 aa8.37□□□□□ -1.07
TOPBP1-210ENST00000572787 IFNLR1Q8IU57 520 aaPredicted RBP8.37□□□□□ -1.07
TOPBP1-210ENST00000572787 PITPNM1O00562 1244 aa8.32□□□□□ -1.08
TOPBP1-210ENST00000572787 FXR2P51116 673 aaKnown RBP eCLIP8.32□□□□□ -1.08
TOPBP1-210ENST00000572787 OSCARQ8IYS5 282 aa8.3□□□□□ -1.08
TOPBP1-210ENST00000572787 EIF5BO60841 1220 aaKnown RBP8.28□□□□□ -1.08
TOPBP1-210ENST00000572787 ECM2O94769 699 aaPredicted RBP8.28□□□□□ -1.08
TOPBP1-210ENST00000572787 CCDC9Q9Y3X0 531 aaKnown RBP8.27□□□□□ -1.09
TOPBP1-210ENST00000572787 EVX2Q03828 476 aa8.26□□□□□ -1.09
TOPBP1-210ENST00000572787 ATF5Q9Y2D1 282 aaPredicted RBP8.21□□□□□ -1.1
TOPBP1-210ENST00000572787 ZBTB7CA1YPR0 619 aa8.19□□□□□ -1.1
TOPBP1-210ENST00000572787 BRPF1P55201 1214 aaPredicted RBP8.19□□□□□ -1.1
TOPBP1-210ENST00000572787 PROM2Q8N271 834 aa8.19□□□□□ -1.1
TOPBP1-210ENST00000572787 SPDYE4A6NLX3 237 aa8.18□□□□□ -1.1
TOPBP1-210ENST00000572787 LHX8Q68G74 356 aa8.15□□□□□ -1.1
TOPBP1-210ENST00000572787 ZMYND15Q9H091 742 aa8.15□□□□□ -1.1
TOPBP1-210ENST00000572787 RSPH6AQ9H0K4 717 aa8.15□□□□□ -1.1
TOPBP1-210ENST00000572787 SPOCK2Q92563 424 aa8.14□□□□□ -1.11
TOPBP1-210ENST00000572787 SHROOM4Q9ULL8 1493 aa8.13□□□□□ -1.11
TOPBP1-210ENST00000572787 LOC105371045A0A1W2PR82 267 aa8.13□□□□□ -1.11
TOPBP1-210ENST00000572787 RGL2O15211 777 aa8.13□□□□□ -1.11
TOPBP1-210ENST00000572787 HMGB1P09429 215 aaKnown RBP8.13□□□□□ -1.11
TOPBP1-210ENST00000572787 PRKAR2AP13861 404 aaKnown RBP8.13□□□□□ -1.11
TOPBP1-210ENST00000572787 CHGAP10645 457 aaKnown RBP8.12□□□□□ -1.11
TOPBP1-210ENST00000572787 CLEC11AQ9Y240 323 aa8.1□□□□□ -1.11
TOPBP1-210ENST00000572787 PDIA4P13667 645 aaKnown RBP8.09□□□□□ -1.11
TOPBP1-210ENST00000572787 C19orf67A6NJJ6 358 aa8.08□□□□□ -1.12
TOPBP1-210ENST00000572787 GABBR2O75899 941 aa8.08□□□□□ -1.12
TOPBP1-210ENST00000572787 SPDYE2BA6NHP3 402 aa8.07□□□□□ -1.12
TOPBP1-210ENST00000572787 SPDYE6P0CI01 402 aa8.07□□□□□ -1.12
TOPBP1-210ENST00000572787 NEUROD2Q15784 382 aa8.07□□□□□ -1.12
TOPBP1-210ENST00000572787 SPDYE2Q495Y8 402 aa8.07□□□□□ -1.12
TOPBP1-210ENST00000572787 SPDYE1Q8NFV5 336 aaPredicted RBP8.06□□□□□ -1.12
TOPBP1-210ENST00000572787 LMOD2Q6P5Q4 547 aa8.04□□□□□ -1.12
TOPBP1-210ENST00000572787 ARID3AQ99856 593 aa8.04□□□□□ -1.12
TOPBP1-210ENST00000572787 PLSCR2Q9NRY7 297 aa8.04□□□□□ -1.12
TOPBP1-210ENST00000572787 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.02□□□□□ -1.13
TOPBP1-210ENST00000572787 CDK11BP21127 795 aaKnown RBP8□□□□□ -1.13
TOPBP1-210ENST00000572787 P3H3Q8IVL6 736 aa8□□□□□ -1.13
TOPBP1-210ENST00000572787 CDK11AQ9UQ88 783 aaPredicted RBP8□□□□□ -1.13
TOPBP1-210ENST00000572787 HSP90B1P14625 803 aaKnown RBP7.99□□□□□ -1.13
TOPBP1-210ENST00000572787 HS6ST3Q8IZP7 471 aa7.98□□□□□ -1.13
TOPBP1-210ENST00000572787 NECTIN2Q92692 538 aa7.95□□□□□ -1.14
TOPBP1-210ENST00000572787 CHADLQ6NUI6 762 aa7.94□□□□□ -1.14
TOPBP1-210ENST00000572787 ZNF692Q9BU19 519 aaPredicted RBP7.94□□□□□ -1.14
TOPBP1-210ENST00000572787 IGSF3O75054 1194 aa7.93□□□□□ -1.14
TOPBP1-210ENST00000572787 C1orf115Q9H7X2 142 aa7.93□□□□□ -1.14
TOPBP1-210ENST00000572787 PRR29P0C7W0 189 aa7.89□□□□□ -1.15
TOPBP1-210ENST00000572787 KCTD17Q8N5Z5 321 aa7.89□□□□□ -1.15
TOPBP1-210ENST00000572787 ZC3H15Q8WU90 426 aaKnown RBP7.89□□□□□ -1.15
TOPBP1-210ENST00000572787 PUS7Q96PZ0 661 aaKnown RBP7.89□□□□□ -1.15
TOPBP1-210ENST00000572787 SLC24A3Q9HC58 644 aa7.88□□□□□ -1.15
TOPBP1-210ENST00000572787 APBB1O00213 710 aa7.87□□□□□ -1.15
TOPBP1-210ENST00000572787 GTPBP6O43824 516 aaPredicted RBP7.87□□□□□ -1.15
TOPBP1-210ENST00000572787 SSUH2Q9Y2M2 353 aa7.87□□□□□ -1.15
TOPBP1-210ENST00000572787 RAD21O60216 631 aa7.86□□□□□ -1.15
TOPBP1-210ENST00000572787 POTEIP0CG38 1075 aa7.86□□□□□ -1.15
TOPBP1-210ENST00000572787 CD44P16070 742 aaKnown RBP7.85□□□□□ -1.15
TOPBP1-210ENST00000572787 CLCN6P51797 869 aa7.85□□□□□ -1.15
TOPBP1-210ENST00000572787 TRIM41Q8WV44 630 aa7.85□□□□□ -1.15
TOPBP1-210ENST00000572787 DCBLD2Q96PD2 775 aa7.84□□□□□ -1.15
TOPBP1-210ENST00000572787 ARID3CA6NKF2 412 aa7.82□□□□□ -1.16
TOPBP1-210ENST00000572787 NKX1-1Q15270 411 aaPredicted RBP7.82□□□□□ -1.16
TOPBP1-210ENST00000572787 RGS22Q8NE09 1264 aa7.82□□□□□ -1.16
TOPBP1-210ENST00000572787 MKRN4PQ13434 485 aaPredicted RBP7.81□□□□□ -1.16
TOPBP1-210ENST00000572787 TRAIPQ9BWF2 469 aa7.81□□□□□ -1.16
TOPBP1-210ENST00000572787 CIZ1Q9ULV3 898 aaPredicted RBP7.81□□□□□ -1.16
TOPBP1-210ENST00000572787 PABPN1Q86U42 306 aaKnown RBP eCLIP7.79□□□□□ -1.16
TOPBP1-210ENST00000572787 CHMP4AQ9BY43 222 aa7.79□□□□□ -1.16
TOPBP1-210ENST00000572787 KCNV2Q8TDN2 545 aa7.78□□□□□ -1.16
TOPBP1-210ENST00000572787 FARP1Q9Y4F1 1045 aaPredicted RBP7.78□□□□□ -1.16
TOPBP1-210ENST00000572787 TMCO4Q5TGY1 634 aa7.76□□□□□ -1.17
TOPBP1-210ENST00000572787 PLCD3Q8N3E9 789 aa7.76□□□□□ -1.17
TOPBP1-210ENST00000572787 RYDENQ9NUL5 291 aaKnown RBP7.76□□□□□ -1.17
TOPBP1-210ENST00000572787 WDR70Q9NW82 654 aa7.76□□□□□ -1.17
TOPBP1-210ENST00000572787 STAG3Q9UJ98 1225 aa7.76□□□□□ -1.17
TOPBP1-210ENST00000572787 MTMR7Q9Y216 660 aa7.76□□□□□ -1.17
TOPBP1-210ENST00000572787 PLEKHG5O94827 1062 aa7.75□□□□□ -1.17
TOPBP1-210ENST00000572787 RBM25P49756 843 aaKnown RBP7.74□□□□□ -1.17
TOPBP1-210ENST00000572787 ZMYND10O75800 440 aa7.73□□□□□ -1.17
TOPBP1-210ENST00000572787 IL27Q8NEV9 243 aa7.73□□□□□ -1.17
TOPBP1-210ENST00000572787 FLIIQ13045 1269 aa7.72□□□□□ -1.17
TOPBP1-210ENST00000572787 CCDC82Q8N4S0 544 aa7.72□□□□□ -1.17
TOPBP1-210ENST00000572787 E9PSI1 815 aa7.71□□□□□ -1.18
TOPBP1-210ENST00000572787 MFAP1P55081 439 aaKnown RBP7.71□□□□□ -1.18
TOPBP1-210ENST00000572787 AEBP1Q8IUX7 1158 aa7.71□□□□□ -1.18
TOPBP1-210ENST00000572787 POTEMA6NI47 508 aa7.7□□□□□ -1.18
TOPBP1-210ENST00000572787 MKRN3Q13064 507 aaKnown RBP7.7□□□□□ -1.18
TOPBP1-210ENST00000572787 ZRANB1Q9UGI0 708 aa7.69□□□□□ -1.18
TOPBP1-210ENST00000572787 OTUD5Q96G74 571 aa7.68□□□□□ -1.18
TOPBP1-210ENST00000572787 FOXD4L5Q5VV16 416 aaPredicted RBP7.67□□□□□ -1.18
TOPBP1-210ENST00000572787 ZNF579Q8NAF0 562 aaKnown RBP7.67□□□□□ -1.18
TOPBP1-210ENST00000572787 FOXD4L4Q8WXT5 416 aaPredicted RBP7.67□□□□□ -1.18
TOPBP1-210ENST00000572787 POTEGQ6S5H5 508 aa7.66□□□□□ -1.18
TOPBP1-210ENST00000572787 AK7Q96M32 723 aa7.66□□□□□ -1.18
TOPBP1-210ENST00000572787 GPBP1L1Q9HC44 474 aaPredicted RBP7.66□□□□□ -1.18
TOPBP1-210ENST00000572787 A6NJR5 290 aa7.65□□□□□ -1.18
TOPBP1-210ENST00000572787 BARGINQ6ZT62 677 aa7.65□□□□□ -1.18
TOPBP1-210ENST00000572787 MIER1Q8N108 512 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 165.8 ms