RNA–Protein interactions for RNA: ENST00000567320.1

CDH1-211, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 352 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-211ENST00000567320 CCDC61Q9Y6R9 512 aa11.48□□□□□ -0.57
CDH1-211ENST00000567320 KLHL34Q8N239 644 aa11.46□□□□□ -0.57
CDH1-211ENST00000567320 MS4A3Q96HJ5 214 aa11.46□□□□□ -0.57
CDH1-211ENST00000567320 VASPP50552 380 aaPredicted RBP11.44□□□□□ -0.58
CDH1-211ENST00000567320 LHX8Q68G74 356 aa11.43□□□□□ -0.58
CDH1-211ENST00000567320 FAM212AQ96EL1 285 aa11.43□□□□□ -0.58
CDH1-211ENST00000567320 NUBP1P53384 320 aa11.42□□□□□ -0.58
CDH1-211ENST00000567320 KIF12Q96FN5 646 aa11.41□□□□□ -0.58
CDH1-211ENST00000567320 DCAF8Q5TAQ9 597 aa11.39□□□□□ -0.59
CDH1-211ENST00000567320 MAP3K13O43283 966 aa11.38□□□□□ -0.59
CDH1-211ENST00000567320 PCDHB13Q9Y5F0 798 aa11.33□□□□□ -0.6
CDH1-211ENST00000567320 ATMINO43313 823 aaPredicted RBP11.31□□□□□ -0.6
CDH1-211ENST00000567320 ASTLQ6HA08 431 aaPredicted RBP11.3□□□□□ -0.6
CDH1-211ENST00000567320 PELP1Q8IZL8 1130 aaKnown RBP11.3□□□□□ -0.6
CDH1-211ENST00000567320 PYGBP11216 843 aa11.28□□□□□ -0.6
CDH1-211ENST00000567320 TRPC6Q9Y210 931 aa11.28□□□□□ -0.6
CDH1-211ENST00000567320 ATN1P54259 1190 aaPredicted RBP11.26□□□□□ -0.61
CDH1-211ENST00000567320 METRNQ9UJH8 293 aa11.26□□□□□ -0.61
CDH1-211ENST00000567320 SLC39A7Q92504 469 aa11.25□□□□□ -0.61
CDH1-211ENST00000567320 SGIP1Q9BQI5 828 aa11.25□□□□□ -0.61
CDH1-211ENST00000567320 BMP2KQ9NSY1 1161 aaPredicted RBP11.25□□□□□ -0.61
CDH1-211ENST00000567320 GSE1Q14687 1217 aa11.24□□□□□ -0.61
CDH1-211ENST00000567320 C7P10643 843 aa11.23□□□□□ -0.61
CDH1-211ENST00000567320 TIE1P35590 1138 aa11.23□□□□□ -0.61
CDH1-211ENST00000567320 IFNL1Q8IU54 200 aa11.23□□□□□ -0.61
CDH1-211ENST00000567320 IFNLR1Q8IU57 520 aaPredicted RBP11.22□□□□□ -0.61
CDH1-211ENST00000567320 SPOCK2Q92563 424 aa11.22□□□□□ -0.61
CDH1-211ENST00000567320 TTLL13PA6NNM8 815 aa11.19□□□□□ -0.62
CDH1-211ENST00000567320 CIZ1Q9ULV3 898 aaPredicted RBP11.19□□□□□ -0.62
CDH1-211ENST00000567320 TMEM106CQ9BVX2 250 aa11.17□□□□□ -0.62
CDH1-211ENST00000567320 POTEB2H3BUK9 544 aa11.16□□□□□ -0.62
CDH1-211ENST00000567320 PCDHB8Q9UN66 801 aa11.16□□□□□ -0.62
CDH1-211ENST00000567320 SEC24BO95487 1268 aa11.15□□□□□ -0.62
CDH1-211ENST00000567320 TRIM35Q9UPQ4 493 aa11.15□□□□□ -0.62
CDH1-211ENST00000567320 ZNF467Q7Z7K2 595 aaPredicted RBP11.09□□□□□ -0.63
CDH1-211ENST00000567320 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
CDH1-211ENST00000567320 CHRM1P11229 460 aaPredicted RBP11.05□□□□□ -0.64
CDH1-211ENST00000567320 IER5LQ5T953 404 aa11.05□□□□□ -0.64
CDH1-211ENST00000567320 MAMSTRQ6ZN01 415 aa11.05□□□□□ -0.64
CDH1-211ENST00000567320 COLQQ9Y215 455 aaPredicted RBP11.05□□□□□ -0.64
CDH1-211ENST00000567320 GOLGA2Q08379 1002 aa11.03□□□□□ -0.64
CDH1-211ENST00000567320 SCUBE2Q9NQ36 999 aa11.03□□□□□ -0.64
CDH1-211ENST00000567320 POTEFA5A3E0 1075 aa11.02□□□□□ -0.65
CDH1-211ENST00000567320 PLCG2P16885 1265 aa11.02□□□□□ -0.65
CDH1-211ENST00000567320 POTEJP0CG39 1038 aa11.01□□□□□ -0.65
CDH1-211ENST00000567320 PSEN1P49768 467 aa10.99□□□□□ -0.65
CDH1-211ENST00000567320 MKRN3Q13064 507 aaKnown RBP10.96□□□□□ -0.65
CDH1-211ENST00000567320 PDAP1Q13442 181 aaKnown RBP10.95□□□□□ -0.66
CDH1-211ENST00000567320 TRIM41Q8WV44 630 aa10.95□□□□□ -0.66
CDH1-211ENST00000567320 OCEL1Q9H607 264 aa10.93□□□□□ -0.66
CDH1-211ENST00000567320 IRX5P78411 483 aaPredicted RBP10.92□□□□□ -0.66
CDH1-211ENST00000567320 CABP2Q9NPB3 220 aa10.88□□□□□ -0.67
CDH1-211ENST00000567320 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.87□□□□□ -0.67
CDH1-211ENST00000567320 SLAIN1Q8ND83 568 aa10.84□□□□□ -0.67
CDH1-211ENST00000567320 FAM163AQ96GL9 167 aaPredicted RBP10.84□□□□□ -0.67
CDH1-211ENST00000567320 RIOK3O14730 519 aaKnown RBP10.82□□□□□ -0.68
CDH1-211ENST00000567320 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.8□□□□□ -0.68
CDH1-211ENST00000567320 PDCD7Q8N8D1 485 aaKnown RBP10.79□□□□□ -0.68
CDH1-211ENST00000567320 C3orf67Q6ZVT6 689 aa10.78□□□□□ -0.68
CDH1-211ENST00000567320 L3MBTL3Q96JM7 780 aaPredicted RBP10.78□□□□□ -0.68
CDH1-211ENST00000567320 G3V3G9 751 aa10.77□□□□□ -0.69
CDH1-211ENST00000567320 POTEMA6NI47 508 aa10.76□□□□□ -0.69
CDH1-211ENST00000567320 ECM2O94769 699 aaPredicted RBP10.76□□□□□ -0.69
CDH1-211ENST00000567320 RNF25Q96BH1 459 aaPredicted RBP10.76□□□□□ -0.69
CDH1-211ENST00000567320 VGFO15240 615 aaPredicted RBP10.75□□□□□ -0.69
CDH1-211ENST00000567320 POTEGQ6S5H5 508 aa10.75□□□□□ -0.69
CDH1-211ENST00000567320 EFCAB3Q8N7B9 438 aa10.75□□□□□ -0.69
CDH1-211ENST00000567320 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.74□□□□□ -0.69
CDH1-211ENST00000567320 ZFP91Q96JP5 570 aaPredicted RBP10.74□□□□□ -0.69
CDH1-211ENST00000567320 DPY19L2Q6NUT2 758 aa10.73□□□□□ -0.69
CDH1-211ENST00000567320 TAOK2Q9UL54 1235 aa10.73□□□□□ -0.69
CDH1-211ENST00000567320 BOLA1Q9Y3E2 137 aa10.68□□□□□ -0.7
CDH1-211ENST00000567320 ILDR1Q86SU0 546 aaPredicted RBP10.66□□□□□ -0.7
CDH1-211ENST00000567320 BCL11BQ9C0K0 894 aaPredicted RBP10.66□□□□□ -0.7
CDH1-211ENST00000567320 STK24Q9Y6E0 443 aa10.66□□□□□ -0.7
CDH1-211ENST00000567320 SNPHO15079 494 aa10.65□□□□□ -0.7
CDH1-211ENST00000567320 PKD2Q13563 968 aa10.65□□□□□ -0.7
CDH1-211ENST00000567320 STK25O00506 426 aa10.64□□□□□ -0.71
CDH1-211ENST00000567320 SOX12O15370 315 aa10.64□□□□□ -0.71
CDH1-211ENST00000567320 LCE2DQ5TA82 110 aaPredicted RBP10.64□□□□□ -0.71
CDH1-211ENST00000567320 PLSCR2Q9NRY7 297 aa10.64□□□□□ -0.71
CDH1-211ENST00000567320 RGL2O15211 777 aa10.62□□□□□ -0.71
CDH1-211ENST00000567320 ST18O60284 1047 aa10.62□□□□□ -0.71
CDH1-211ENST00000567320 PHF8Q9UPP1 1060 aa10.61□□□□□ -0.71
CDH1-211ENST00000567320 NLRP6P59044 892 aa10.56□□□□□ -0.72
CDH1-211ENST00000567320 PCDH10Q9P2E7 1040 aa10.54□□□□□ -0.72
CDH1-211ENST00000567320 MICALL2Q8IY33 904 aa10.53□□□□□ -0.72
CDH1-211ENST00000567320 MS4A4AQ96JQ5 239 aa10.53□□□□□ -0.72
CDH1-211ENST00000567320 TMEM121BQ9BXQ6 578 aaPredicted RBP10.52□□□□□ -0.73
CDH1-211ENST00000567320 MARVELD3Q96A59 401 aa10.51□□□□□ -0.73
CDH1-211ENST00000567320 CDAN1Q8IWY9 1227 aa10.48□□□□□ -0.73
CDH1-211ENST00000567320 ZNF710Q8N1W2 664 aa10.48□□□□□ -0.73
CDH1-211ENST00000567320 MFRPQ9BY79 579 aa10.48□□□□□ -0.73
CDH1-211ENST00000567320 FBXO22Q8NEZ5 403 aa10.47□□□□□ -0.73
CDH1-211ENST00000567320 EMP3P54852 163 aa10.46□□□□□ -0.73
CDH1-211ENST00000567320 DOK7Q18PE1 504 aa10.44□□□□□ -0.74
CDH1-211ENST00000567320 CHGAP10645 457 aaKnown RBP10.42□□□□□ -0.74
CDH1-211ENST00000567320 RIMBP2O15034 1052 aa10.41□□□□□ -0.74
CDH1-211ENST00000567320 TMEM92Q6UXU6 159 aa10.41□□□□□ -0.74
CDH1-211ENST00000567320 HOXB3P14651 431 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms