RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 KLHL34Q8N239 644 aa14.29□□□□□ -0.12
CHD9-212ENST00000564641 FAM212AQ96EL1 285 aa14.28□□□□□ -0.12
CHD9-212ENST00000564641 DCBLD2Q96PD2 775 aa14.28□□□□□ -0.12
CHD9-212ENST00000564641 GALR2O43603 387 aaPredicted RBP14.24□□□□□ -0.13
CHD9-212ENST00000564641 KIF12Q96FN5 646 aa14.2□□□□□ -0.14
CHD9-212ENST00000564641 POTEIP0CG38 1075 aa14.16□□□□□ -0.14
CHD9-212ENST00000564641 MS4A3Q96HJ5 214 aa14.16□□□□□ -0.14
CHD9-212ENST00000564641 SGIP1Q9BQI5 828 aa14.16□□□□□ -0.14
CHD9-212ENST00000564641 DCAF8Q5TAQ9 597 aa14.15□□□□□ -0.14
CHD9-212ENST00000564641 IFNLR1Q8IU57 520 aaPredicted RBP14.14□□□□□ -0.15
CHD9-212ENST00000564641 GSE1Q14687 1217 aa14.13□□□□□ -0.15
CHD9-212ENST00000564641 MAP3K13O43283 966 aa14.11□□□□□ -0.15
CHD9-212ENST00000564641 SPOCK2Q92563 424 aa14.11□□□□□ -0.15
CHD9-212ENST00000564641 PCDHB13Q9Y5F0 798 aa14.06□□□□□ -0.16
CHD9-212ENST00000564641 ASTLQ6HA08 431 aaPredicted RBP14.05□□□□□ -0.16
CHD9-212ENST00000564641 TIE1P35590 1138 aa14.01□□□□□ -0.17
CHD9-212ENST00000564641 ATMINO43313 823 aaPredicted RBP14□□□□□ -0.17
CHD9-212ENST00000564641 PYGBP11216 843 aa13.98□□□□□ -0.17
CHD9-212ENST00000564641 CHRM1P11229 460 aaPredicted RBP13.97□□□□□ -0.17
CHD9-212ENST00000564641 LHX8Q68G74 356 aa13.97□□□□□ -0.17
CHD9-212ENST00000564641 IFNL1Q8IU54 200 aa13.95□□□□□ -0.18
CHD9-212ENST00000564641 SLC39A7Q92504 469 aa13.94□□□□□ -0.18
CHD9-212ENST00000564641 BMP2KQ9NSY1 1161 aaPredicted RBP13.94□□□□□ -0.18
CHD9-212ENST00000564641 C7P10643 843 aa13.93□□□□□ -0.18
CHD9-212ENST00000564641 CIZ1Q9ULV3 898 aaPredicted RBP13.93□□□□□ -0.18
CHD9-212ENST00000564641 ATN1P54259 1190 aaPredicted RBP13.91□□□□□ -0.18
CHD9-212ENST00000564641 PELP1Q8IZL8 1130 aaKnown RBP13.91□□□□□ -0.18
CHD9-212ENST00000564641 TRPC6Q9Y210 931 aa13.91□□□□□ -0.18
CHD9-212ENST00000564641 ZNF467Q7Z7K2 595 aaPredicted RBP13.9□□□□□ -0.18
CHD9-212ENST00000564641 TRIM41Q8WV44 630 aa13.9□□□□□ -0.18
CHD9-212ENST00000564641 TTLL13PA6NNM8 815 aa13.89□□□□□ -0.19
CHD9-212ENST00000564641 METRNQ9UJH8 293 aa13.87□□□□□ -0.19
CHD9-212ENST00000564641 TMEM106CQ9BVX2 250 aa13.84□□□□□ -0.19
CHD9-212ENST00000564641 PCDHB8Q9UN66 801 aa13.82□□□□□ -0.2
CHD9-212ENST00000564641 IER5LQ5T953 404 aa13.81□□□□□ -0.2
CHD9-212ENST00000564641 TRIM35Q9UPQ4 493 aa13.81□□□□□ -0.2
CHD9-212ENST00000564641 SEC24BO95487 1268 aa13.73□□□□□ -0.21
CHD9-212ENST00000564641 PDAP1Q13442 181 aaKnown RBP13.72□□□□□ -0.21
CHD9-212ENST00000564641 PSEN1P49768 467 aa13.7□□□□□ -0.22
CHD9-212ENST00000564641 POTEB2H3BUK9 544 aa13.69□□□□□ -0.22
CHD9-212ENST00000564641 MAMSTRQ6ZN01 415 aa13.69□□□□□ -0.22
CHD9-212ENST00000564641 GOLGA2Q08379 1002 aa13.67□□□□□ -0.22
CHD9-212ENST00000564641 POTEFA5A3E0 1075 aa13.64□□□□□ -0.23
CHD9-212ENST00000564641 PLCG2P16885 1265 aa13.63□□□□□ -0.23
CHD9-212ENST00000564641 MKRN3Q13064 507 aaKnown RBP13.62□□□□□ -0.23
CHD9-212ENST00000564641 OTUD5Q96G74 571 aa13.62□□□□□ -0.23
CHD9-212ENST00000564641 COLQQ9Y215 455 aaPredicted RBP13.62□□□□□ -0.23
CHD9-212ENST00000564641 RIOK3O14730 519 aaKnown RBP13.6□□□□□ -0.23
CHD9-212ENST00000564641 IRX5P78411 483 aaPredicted RBP13.6□□□□□ -0.23
CHD9-212ENST00000564641 OCEL1Q9H607 264 aa13.6□□□□□ -0.23
CHD9-212ENST00000564641 SCUBE2Q9NQ36 999 aa13.6□□□□□ -0.23
CHD9-212ENST00000564641 TAOK2Q9UL54 1235 aa13.59□□□□□ -0.23
CHD9-212ENST00000564641 VGFO15240 615 aaPredicted RBP13.55□□□□□ -0.24
CHD9-212ENST00000564641 POTEJP0CG39 1038 aa13.55□□□□□ -0.24
CHD9-212ENST00000564641 ECM2O94769 699 aaPredicted RBP13.53□□□□□ -0.24
CHD9-212ENST00000564641 RNF25Q96BH1 459 aaPredicted RBP13.52□□□□□ -0.25
CHD9-212ENST00000564641 CABP2Q9NPB3 220 aa13.51□□□□□ -0.25
CHD9-212ENST00000564641 PKD2Q13563 968 aa13.49□□□□□ -0.25
CHD9-212ENST00000564641 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.49□□□□□ -0.252e-6■■□□□ 11.9
CHD9-212ENST00000564641 ILDR1Q86SU0 546 aaPredicted RBP13.45□□□□□ -0.26
CHD9-212ENST00000564641 PDCD7Q8N8D1 485 aaKnown RBP13.45□□□□□ -0.26
CHD9-212ENST00000564641 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.44□□□□□ -0.26
CHD9-212ENST00000564641 L3MBTL3Q96JM7 780 aaPredicted RBP13.44□□□□□ -0.26
CHD9-212ENST00000564641 ZFP91Q96JP5 570 aaPredicted RBP13.44□□□□□ -0.26
CHD9-212ENST00000564641 SOX12O15370 315 aa13.38□□□□□ -0.27
CHD9-212ENST00000564641 EFCAB3Q8N7B9 438 aa13.38□□□□□ -0.27
CHD9-212ENST00000564641 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.36□□□□□ -0.27
CHD9-212ENST00000564641 RGL2O15211 777 aa13.35□□□□□ -0.27
CHD9-212ENST00000564641 G3V3G9 751 aa13.33□□□□□ -0.28
CHD9-212ENST00000564641 SLAIN1Q8ND83 568 aa13.33□□□□□ -0.28
CHD9-212ENST00000564641 BCL11BQ9C0K0 894 aaPredicted RBP13.33□□□□□ -0.28
CHD9-212ENST00000564641 STK25O00506 426 aa13.32□□□□□ -0.28
CHD9-212ENST00000564641 C3orf67Q6ZVT6 689 aa13.32□□□□□ -0.28
CHD9-212ENST00000564641 STK24Q9Y6E0 443 aa13.31□□□□□ -0.28
CHD9-212ENST00000564641 BOLA1Q9Y3E2 137 aa13.29□□□□□ -0.28
CHD9-212ENST00000564641 DPY19L2Q6NUT2 758 aa13.26□□□□□ -0.29
CHD9-212ENST00000564641 NLRP6P59044 892 aa13.24□□□□□ -0.29
CHD9-212ENST00000564641 SNPHO15079 494 aa13.21□□□□□ -0.29
CHD9-212ENST00000564641 TMEM121BQ9BXQ6 578 aaPredicted RBP13.21□□□□□ -0.29
CHD9-212ENST00000564641 PHF8Q9UPP1 1060 aa13.21□□□□□ -0.29
CHD9-212ENST00000564641 FAM163AQ96GL9 167 aaPredicted RBP13.19□□□□□ -0.3
CHD9-212ENST00000564641 HS6ST3Q8IZP7 471 aa13.16□□□□□ -0.3
CHD9-212ENST00000564641 MS4A4AQ96JQ5 239 aa13.16□□□□□ -0.3
CHD9-212ENST00000564641 FBXO22Q8NEZ5 403 aa13.15□□□□□ -0.3
CHD9-212ENST00000564641 MFRPQ9BY79 579 aa13.14□□□□□ -0.31
CHD9-212ENST00000564641 MICALL2Q8IY33 904 aa13.13□□□□□ -0.31
CHD9-212ENST00000564641 POTEMA6NI47 508 aa13.11□□□□□ -0.31
CHD9-212ENST00000564641 CHGAP10645 457 aaKnown RBP13.09□□□□□ -0.31
CHD9-212ENST00000564641 POTEGQ6S5H5 508 aa13.09□□□□□ -0.31
CHD9-212ENST00000564641 LCE2DQ5TA82 110 aaPredicted RBP13.08□□□□□ -0.32
CHD9-212ENST00000564641 DNAJC5Q9H3Z4 198 aa13.05□□□□□ -0.32
CHD9-212ENST00000564641 ST18O60284 1047 aa13.04□□□□□ -0.32
CHD9-212ENST00000564641 PCDH10Q9P2E7 1040 aa13.04□□□□□ -0.32
CHD9-212ENST00000564641 RYDENQ9NUL5 291 aaKnown RBP13.03□□□□□ -0.32
CHD9-212ENST00000564641 DOK7Q18PE1 504 aa12.97□□□□□ -0.33
CHD9-212ENST00000564641 AMER1Q5JTC6 1135 aaPredicted RBP12.97□□□□□ -0.33
CHD9-212ENST00000564641 RIMBP2O15034 1052 aa12.94□□□□□ -0.34
CHD9-212ENST00000564641 DCAF8L2P0C7V8 631 aa12.94□□□□□ -0.34
CHD9-212ENST00000564641 TMEM92Q6UXU6 159 aa12.94□□□□□ -0.34
CHD9-212ENST00000564641 ZNF710Q8N1W2 664 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms