RNA–Protein interactions for RNA: ENST00000564582.2

CHD9-210, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 3

Gene CHD9, Length 968 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-210ENST00000564582 TRIM41Q8WV44 630 aa11.95□□□□□ -0.5
CHD9-210ENST00000564582 ZRANB1Q9UGI0 708 aa11.94□□□□□ -0.5
CHD9-210ENST00000564582 RTN4Q9NQC3 1192 aaKnown RBP11.9□□□□□ -0.5
CHD9-210ENST00000564582 CCDC61Q9Y6R9 512 aa11.88□□□□□ -0.51
CHD9-210ENST00000564582 ECM2O94769 699 aaPredicted RBP11.87□□□□□ -0.51
CHD9-210ENST00000564582 PKD2Q13563 968 aa11.87□□□□□ -0.51
CHD9-210ENST00000564582 ZNF579Q8NAF0 562 aaKnown RBP11.85□□□□□ -0.51
CHD9-210ENST00000564582 PYGBP11216 843 aa11.83□□□□□ -0.52
CHD9-210ENST00000564582 CHRM1P11229 460 aaPredicted RBP11.83□□□□□ -0.52
CHD9-210ENST00000564582 CLCN6P51797 869 aa11.81□□□□□ -0.52
CHD9-210ENST00000564582 EVX2Q03828 476 aa11.79□□□□□ -0.52
CHD9-210ENST00000564582 PHF12Q96QT6 1004 aa11.79□□□□□ -0.52
CHD9-210ENST00000564582 KIF12Q96FN5 646 aa11.77□□□□□ -0.53
CHD9-210ENST00000564582 SGIP1Q9BQI5 828 aa11.77□□□□□ -0.53
CHD9-210ENST00000564582 ZNF467Q7Z7K2 595 aaPredicted RBP11.75□□□□□ -0.53
CHD9-210ENST00000564582 PCDHB13Q9Y5F0 798 aa11.75□□□□□ -0.53
CHD9-210ENST00000564582 TAOK2Q9UL54 1235 aa11.74□□□□□ -0.53
CHD9-210ENST00000564582 MAP3K13O43283 966 aa11.73□□□□□ -0.53
CHD9-210ENST00000564582 RIOK3O14730 519 aaKnown RBP11.7□□□□□ -0.54
CHD9-210ENST00000564582 RGL2O15211 777 aa11.69□□□□□ -0.54
CHD9-210ENST00000564582 SP7Q8TDD2 431 aaPredicted RBP11.69□□□□□ -0.54
CHD9-210ENST00000564582 DCAF8L2P0C7V8 631 aa11.68□□□□□ -0.54
CHD9-210ENST00000564582 IFNL1Q8IU54 200 aa11.66□□□□□ -0.54
CHD9-210ENST00000564582 MS4A3Q96HJ5 214 aa11.66□□□□□ -0.54
CHD9-210ENST00000564582 GABBR2O75899 941 aa11.65□□□□□ -0.54
CHD9-210ENST00000564582 RNF25Q96BH1 459 aaPredicted RBP11.65□□□□□ -0.54
CHD9-210ENST00000564582 PCDHB8Q9UN66 801 aa11.65□□□□□ -0.54
CHD9-210ENST00000564582 VGFO15240 615 aaPredicted RBP11.64□□□□□ -0.55
CHD9-210ENST00000564582 GALR2O43603 387 aaPredicted RBP11.62□□□□□ -0.55
CHD9-210ENST00000564582 PDAP1Q13442 181 aaKnown RBP11.62□□□□□ -0.55
CHD9-210ENST00000564582 PSEN1P49768 467 aa11.57□□□□□ -0.56
CHD9-210ENST00000564582 TIE1P35590 1138 aa11.56□□□□□ -0.56
CHD9-210ENST00000564582 DCBLD2Q96PD2 775 aa11.55□□□□□ -0.56
CHD9-210ENST00000564582 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.53□□□□□ -0.56
CHD9-210ENST00000564582 ZFP91Q96JP5 570 aaPredicted RBP11.53□□□□□ -0.56
CHD9-210ENST00000564582 STK25O00506 426 aa11.52□□□□□ -0.57
CHD9-210ENST00000564582 TMEM106CQ9BVX2 250 aa11.52□□□□□ -0.57
CHD9-210ENST00000564582 CHGAP10645 457 aaKnown RBP11.51□□□□□ -0.57
CHD9-210ENST00000564582 TRPC6Q9Y210 931 aa11.5□□□□□ -0.57
CHD9-210ENST00000564582 HS6ST3Q8IZP7 471 aa11.49□□□□□ -0.57
CHD9-210ENST00000564582 BCL11BQ9C0K0 894 aaPredicted RBP11.49□□□□□ -0.57
CHD9-210ENST00000564582 STK24Q9Y6E0 443 aa11.49□□□□□ -0.57
CHD9-210ENST00000564582 TTLL13PA6NNM8 815 aa11.48□□□□□ -0.57
CHD9-210ENST00000564582 GOLGA2Q08379 1002 aa11.48□□□□□ -0.57
CHD9-210ENST00000564582 BMP2KQ9NSY1 1161 aaPredicted RBP11.48□□□□□ -0.57
CHD9-210ENST00000564582 ASTLQ6HA08 431 aaPredicted RBP11.46□□□□□ -0.57
CHD9-210ENST00000564582 ATMINO43313 823 aaPredicted RBP11.43□□□□□ -0.58
CHD9-210ENST00000564582 CABP2Q9NPB3 220 aa11.43□□□□□ -0.58
CHD9-210ENST00000564582 ATN1P54259 1190 aaPredicted RBP11.41□□□□□ -0.58
CHD9-210ENST00000564582 MKRN3Q13064 507 aaKnown RBP11.41□□□□□ -0.58
CHD9-210ENST00000564582 TRIM35Q9UPQ4 493 aa11.41□□□□□ -0.58
CHD9-210ENST00000564582 BBXQ8WY36 941 aaPredicted RBP11.38□□□□□ -0.59
CHD9-210ENST00000564582 DNAJC5Q9H3Z4 198 aa11.38□□□□□ -0.59
CHD9-210ENST00000564582 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.37□□□□□ -0.59
CHD9-210ENST00000564582 SOX12O15370 315 aa11.35□□□□□ -0.59
CHD9-210ENST00000564582 IER5LQ5T953 404 aa11.35□□□□□ -0.59
CHD9-210ENST00000564582 EFCAB3Q8N7B9 438 aa11.35□□□□□ -0.59
CHD9-210ENST00000564582 SLC39A7Q92504 469 aa11.34□□□□□ -0.59
CHD9-210ENST00000564582 POTEIP0CG38 1075 aa11.33□□□□□ -0.6
CHD9-210ENST00000564582 RYDENQ9NUL5 291 aaKnown RBP11.33□□□□□ -0.6
CHD9-210ENST00000564582 C7P10643 843 aa11.31□□□□□ -0.6
CHD9-210ENST00000564582 NLRP6P59044 892 aa11.29□□□□□ -0.6
CHD9-210ENST00000564582 PELP1Q8IZL8 1130 aaKnown RBP11.29□□□□□ -0.6
CHD9-210ENST00000564582 SEC24BO95487 1268 aa11.28□□□□□ -0.6
CHD9-210ENST00000564582 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.28□□□□□ -0.6
CHD9-210ENST00000564582 METRNQ9UJH8 293 aa11.27□□□□□ -0.61
CHD9-210ENST00000564582 PLCG2P16885 1265 aa11.26□□□□□ -0.61
CHD9-210ENST00000564582 NKX1-1Q15270 411 aaPredicted RBP11.25□□□□□ -0.61
CHD9-210ENST00000564582 OCEL1Q9H607 264 aa11.25□□□□□ -0.61
CHD9-210ENST00000564582 MFRPQ9BY79 579 aa11.24□□□□□ -0.61
CHD9-210ENST00000564582 PHF8Q9UPP1 1060 aa11.24□□□□□ -0.61
CHD9-210ENST00000564582 IRX5P78411 483 aaPredicted RBP11.23□□□□□ -0.61
CHD9-210ENST00000564582 SPRYD3Q8NCJ5 442 aa11.23□□□□□ -0.61
CHD9-210ENST00000564582 PAXIP1Q6ZW49 1069 aaPredicted RBP11.2□□□□□ -0.62
CHD9-210ENST00000564582 ILDR1Q86SU0 546 aaPredicted RBP11.2□□□□□ -0.62
CHD9-210ENST00000564582 FBXO22Q8NEZ5 403 aa11.19□□□□□ -0.62
CHD9-210ENST00000564582 CFAP44Q96MT7 982 aa11.19□□□□□ -0.62
CHD9-210ENST00000564582 GTPBP6O43824 516 aaPredicted RBP11.17□□□□□ -0.62
CHD9-210ENST00000564582 PDCD7Q8N8D1 485 aaKnown RBP11.17□□□□□ -0.62
CHD9-210ENST00000564582 G3V3G9 751 aa11.16□□□□□ -0.62
CHD9-210ENST00000564582 COLQQ9Y215 455 aaPredicted RBP11.16□□□□□ -0.62
CHD9-210ENST00000564582 L3MBTL3Q96JM7 780 aaPredicted RBP11.15□□□□□ -0.62
CHD9-210ENST00000564582 PLCB2Q00722 1185 aa11.14□□□□□ -0.63
CHD9-210ENST00000564582 MS4A4AQ96JQ5 239 aa11.14□□□□□ -0.63
CHD9-210ENST00000564582 POTEFA5A3E0 1075 aa11.11□□□□□ -0.63
CHD9-210ENST00000564582 DPY19L2Q6NUT2 758 aa11.09□□□□□ -0.63
CHD9-210ENST00000564582 BOLA1Q9Y3E2 137 aa11.09□□□□□ -0.63
CHD9-210ENST00000564582 PPP1R37O75864 691 aa11.06□□□□□ -0.64
CHD9-210ENST00000564582 MAMSTRQ6ZN01 415 aa11.03□□□□□ -0.64
CHD9-210ENST00000564582 C3orf67Q6ZVT6 689 aa11.03□□□□□ -0.64
CHD9-210ENST00000564582 MICALL2Q8IY33 904 aa11.03□□□□□ -0.64
CHD9-210ENST00000564582 TMEM121BQ9BXQ6 578 aaPredicted RBP11.01□□□□□ -0.65
CHD9-210ENST00000564582 HAP1P54257 671 aaPredicted RBP11□□□□□ -0.65
CHD9-210ENST00000564582 SCUBE2Q9NQ36 999 aa11□□□□□ -0.65
CHD9-210ENST00000564582 LHX8Q68G74 356 aa10.98□□□□□ -0.65
CHD9-210ENST00000564582 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.98□□□□□ -0.65
CHD9-210ENST00000564582 POTEB2H3BUK9 544 aa10.97□□□□□ -0.65
CHD9-210ENST00000564582 TSHZ2Q9NRE2 1034 aa10.93□□□□□ -0.66
CHD9-210ENST00000564582 POTEJP0CG39 1038 aa10.91□□□□□ -0.66
CHD9-210ENST00000564582 TMC2Q8TDI7 906 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms