RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 GTF3C3Q9Y5Q9 886 aa9.67□□□□□ -0.86
VPS35P1-201ENST00000563400 DCAF8L2P0C7V8 631 aa9.63□□□□□ -0.87
VPS35P1-201ENST00000563400 HOMEZQ8IX15 550 aa9.63□□□□□ -0.87
VPS35P1-201ENST00000563400 C19orf67A6NJJ6 358 aa9.62□□□□□ -0.87
VPS35P1-201ENST00000563400 PAK3O75914 559 aaPredicted RBP9.62□□□□□ -0.87
VPS35P1-201ENST00000563400 CD44P16070 742 aaKnown RBP9.6□□□□□ -0.87
VPS35P1-201ENST00000563400 VASPP50552 380 aaPredicted RBP9.6□□□□□ -0.87
VPS35P1-201ENST00000563400 MNX1P50219 401 aaPredicted RBP9.58□□□□□ -0.88
VPS35P1-201ENST00000563400 SP7Q8TDD2 431 aaPredicted RBP9.56□□□□□ -0.88
VPS35P1-201ENST00000563400 KLHL34Q8N239 644 aa9.55□□□□□ -0.88
VPS35P1-201ENST00000563400 ZRANB1Q9UGI0 708 aa9.52□□□□□ -0.88
VPS35P1-201ENST00000563400 CLCN6P51797 869 aa9.51□□□□□ -0.89
VPS35P1-201ENST00000563400 EVX2Q03828 476 aa9.5□□□□□ -0.89
VPS35P1-201ENST00000563400 TMEM132AQ24JP5 1023 aa9.46□□□□□ -0.89
VPS35P1-201ENST00000563400 TSPYL2Q9H2G4 693 aaPredicted RBP9.46□□□□□ -0.89
VPS35P1-201ENST00000563400 ZNF579Q8NAF0 562 aaKnown RBP9.46□□□□□ -0.9
VPS35P1-201ENST00000563400 FAM212AQ96EL1 285 aa9.46□□□□□ -0.9
VPS35P1-201ENST00000563400 ERICH6Q7L0X2 663 aa9.45□□□□□ -0.9
VPS35P1-201ENST00000563400 NUBP1P53384 320 aa9.41□□□□□ -0.9
VPS35P1-201ENST00000563400 RASEFQ8IZ41 740 aa9.41□□□□□ -0.9
VPS35P1-201ENST00000563400 SPOCK2Q92563 424 aa9.41□□□□□ -0.9
VPS35P1-201ENST00000563400 IFNLR1Q8IU57 520 aaPredicted RBP9.41□□□□□ -0.9
VPS35P1-201ENST00000563400 GABBR2O75899 941 aa9.4□□□□□ -0.91
VPS35P1-201ENST00000563400 DCAF8Q5TAQ9 597 aa9.39□□□□□ -0.91
VPS35P1-201ENST00000563400 PAXIP1Q6ZW49 1069 aaPredicted RBP9.39□□□□□ -0.91
VPS35P1-201ENST00000563400 GSE1Q14687 1217 aa9.38□□□□□ -0.91
VPS35P1-201ENST00000563400 C14orf37Q86TY3 774 aa9.38□□□□□ -0.91
VPS35P1-201ENST00000563400 RANGAP1P46060 587 aaPredicted RBP9.37□□□□□ -0.91
VPS35P1-201ENST00000563400 CFAP44Q96MT7 982 aa9.37□□□□□ -0.91
VPS35P1-201ENST00000563400 PKD2Q13563 968 aa9.36□□□□□ -0.91
VPS35P1-201ENST00000563400 CCDC61Q9Y6R9 512 aa9.36□□□□□ -0.91
VPS35P1-201ENST00000563400 PHF12Q96QT6 1004 aa9.36□□□□□ -0.91
VPS35P1-201ENST00000563400 PODXL2Q9NZ53 605 aa9.36□□□□□ -0.91
VPS35P1-201ENST00000563400 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.34□□□□□ -0.91
VPS35P1-201ENST00000563400 BBXQ8WY36 941 aaPredicted RBP9.32□□□□□ -0.92
VPS35P1-201ENST00000563400 TSHZ2Q9NRE2 1034 aa9.32□□□□□ -0.92
VPS35P1-201ENST00000563400 DCBLD2Q96PD2 775 aa9.31□□□□□ -0.92
VPS35P1-201ENST00000563400 CIZ1Q9ULV3 898 aaPredicted RBP9.31□□□□□ -0.92
VPS35P1-201ENST00000563400 KIF12Q96FN5 646 aa9.3□□□□□ -0.92
VPS35P1-201ENST00000563400 SGIP1Q9BQI5 828 aa9.29□□□□□ -0.92
VPS35P1-201ENST00000563400 GALR2O43603 387 aaPredicted RBP9.27□□□□□ -0.93
VPS35P1-201ENST00000563400 NBR1Q14596 966 aa9.26□□□□□ -0.93
VPS35P1-201ENST00000563400 MAP3K13O43283 966 aa9.26□□□□□ -0.93
VPS35P1-201ENST00000563400 MS4A3Q96HJ5 214 aa9.26□□□□□ -0.93
VPS35P1-201ENST00000563400 PCDHB13Q9Y5F0 798 aa9.26□□□□□ -0.93
VPS35P1-201ENST00000563400 TRIM41Q8WV44 630 aa9.25□□□□□ -0.93
VPS35P1-201ENST00000563400 PYGBP11216 843 aa9.24□□□□□ -0.93
VPS35P1-201ENST00000563400 SUPT5HO00267 1087 aaKnown RBP9.21□□□□□ -0.93
VPS35P1-201ENST00000563400 CHRM1P11229 460 aaPredicted RBP9.21□□□□□ -0.93
VPS35P1-201ENST00000563400 ZNF467Q7Z7K2 595 aaPredicted RBP9.2□□□□□ -0.94
VPS35P1-201ENST00000563400 TIE1P35590 1138 aa9.16□□□□□ -0.94
VPS35P1-201ENST00000563400 IFNL1Q8IU54 200 aa9.16□□□□□ -0.94
VPS35P1-201ENST00000563400 SPRYD3Q8NCJ5 442 aa9.16□□□□□ -0.94
VPS35P1-201ENST00000563400 ASTLQ6HA08 431 aaPredicted RBP9.13□□□□□ -0.95
VPS35P1-201ENST00000563400 POTEIP0CG38 1075 aa9.12□□□□□ -0.95
VPS35P1-201ENST00000563400 ATMINO43313 823 aaPredicted RBP9.11□□□□□ -0.95
VPS35P1-201ENST00000563400 DNAJC5Q9H3Z4 198 aa9.11□□□□□ -0.95
VPS35P1-201ENST00000563400 BMP2KQ9NSY1 1161 aaPredicted RBP9.1□□□□□ -0.95
VPS35P1-201ENST00000563400 PCDHB8Q9UN66 801 aa9.1□□□□□ -0.95
VPS35P1-201ENST00000563400 NPM2Q86SE8 214 aaKnown RBP9.1□□□□□ -0.95
VPS35P1-201ENST00000563400 TMEM106CQ9BVX2 250 aa9.1□□□□□ -0.95
VPS35P1-201ENST00000563400 TRIM26Q12899 539 aaPredicted RBP9.09□□□□□ -0.95
VPS35P1-201ENST00000563400 SLC39A7Q92504 469 aa9.09□□□□□ -0.95
VPS35P1-201ENST00000563400 TTLL13PA6NNM8 815 aa9.08□□□□□ -0.96
VPS35P1-201ENST00000563400 ECM2O94769 699 aaPredicted RBP9.07□□□□□ -0.96
VPS35P1-201ENST00000563400 C7P10643 843 aa9.07□□□□□ -0.96
VPS35P1-201ENST00000563400 ATN1P54259 1190 aaPredicted RBP9.07□□□□□ -0.96
VPS35P1-201ENST00000563400 PDAP1Q13442 181 aaKnown RBP9.07□□□□□ -0.96
VPS35P1-201ENST00000563400 TRPC6Q9Y210 931 aa9.07□□□□□ -0.96
VPS35P1-201ENST00000563400 UBTFP17480 764 aaKnown RBP9.06□□□□□ -0.96
VPS35P1-201ENST00000563400 PSEN1P49768 467 aa9.05□□□□□ -0.96
VPS35P1-201ENST00000563400 GOLGA2Q08379 1002 aa9.05□□□□□ -0.96
VPS35P1-201ENST00000563400 RIOK3O14730 519 aaKnown RBP9.05□□□□□ -0.96
VPS35P1-201ENST00000563400 TRIM35Q9UPQ4 493 aa9.05□□□□□ -0.96
VPS35P1-201ENST00000563400 METRNQ9UJH8 293 aa9.03□□□□□ -0.96
VPS35P1-201ENST00000563400 IER5LQ5T953 404 aa9.02□□□□□ -0.97
VPS35P1-201ENST00000563400 PELP1Q8IZL8 1130 aaKnown RBP9.02□□□□□ -0.97
VPS35P1-201ENST00000563400 RGL2O15211 777 aa9.01□□□□□ -0.97
VPS35P1-201ENST00000563400 VGFO15240 615 aaPredicted RBP9.01□□□□□ -0.97
VPS35P1-201ENST00000563400 SEC24BO95487 1268 aa9.01□□□□□ -0.97
VPS35P1-201ENST00000563400 HRCP23327 699 aa9□□□□□ -0.97
VPS35P1-201ENST00000563400 MKRN3Q13064 507 aaKnown RBP9□□□□□ -0.97
VPS35P1-201ENST00000563400 LHX8Q68G74 356 aa8.99□□□□□ -0.97
VPS35P1-201ENST00000563400 PLCG2P16885 1265 aa8.95□□□□□ -0.98
VPS35P1-201ENST00000563400 RNF25Q96BH1 459 aaPredicted RBP8.95□□□□□ -0.98
VPS35P1-201ENST00000563400 CABP2Q9NPB3 220 aa8.93□□□□□ -0.98
VPS35P1-201ENST00000563400 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.92□□□□□ -0.98
VPS35P1-201ENST00000563400 ZFP91Q96JP5 570 aaPredicted RBP8.92□□□□□ -0.98
VPS35P1-201ENST00000563400 OCEL1Q9H607 264 aa8.92□□□□□ -0.98
VPS35P1-201ENST00000563400 CHGAP10645 457 aaKnown RBP8.91□□□□□ -0.98
VPS35P1-201ENST00000563400 MAMSTRQ6ZN01 415 aa8.9□□□□□ -0.98
VPS35P1-201ENST00000563400 STK25O00506 426 aa8.89□□□□□ -0.99
VPS35P1-201ENST00000563400 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.89□□□□□ -0.99
VPS35P1-201ENST00000563400 BRPF1P55201 1214 aaPredicted RBP8.88□□□□□ -0.99
VPS35P1-201ENST00000563400 IRX5P78411 483 aaPredicted RBP8.88□□□□□ -0.99
VPS35P1-201ENST00000563400 BCL11BQ9C0K0 894 aaPredicted RBP8.87□□□□□ -0.99
VPS35P1-201ENST00000563400 COLQQ9Y215 455 aaPredicted RBP8.87□□□□□ -0.99
VPS35P1-201ENST00000563400 STK24Q9Y6E0 443 aa8.87□□□□□ -0.99
VPS35P1-201ENST00000563400 SCUBE2Q9NQ36 999 aa8.86□□□□□ -0.99
VPS35P1-201ENST00000563400 SOX12O15370 315 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms