RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 NPM1P06748 294 aaKnown RBP eCLIP9.66□□□□□ -0.86
VPS35-203ENST00000562420 PAK3O75914 559 aaPredicted RBP9.65□□□□□ -0.86
VPS35-203ENST00000562420 KLHL34Q8N239 644 aa9.64□□□□□ -0.87
VPS35-203ENST00000562420 SPOCK2Q92563 424 aa9.63□□□□□ -0.87
VPS35-203ENST00000562420 NUBP1P53384 320 aa9.58□□□□□ -0.88
VPS35-203ENST00000562420 POTEB2H3BUK9 544 aa9.56□□□□□ -0.88
VPS35-203ENST00000562420 AMER1Q5JTC6 1135 aaPredicted RBP9.55□□□□□ -0.88
VPS35-203ENST00000562420 PELP1Q8IZL8 1130 aaKnown RBP9.55□□□□□ -0.88
VPS35-203ENST00000562420 OTUD5Q96G74 571 aa9.53□□□□□ -0.88
VPS35-203ENST00000562420 TSPYL2Q9H2G4 693 aaPredicted RBP9.53□□□□□ -0.88
VPS35-203ENST00000562420 FAM212AQ96EL1 285 aa9.52□□□□□ -0.89
VPS35-203ENST00000562420 MS4A3Q96HJ5 214 aa9.52□□□□□ -0.89
VPS35-203ENST00000562420 GSE1Q14687 1217 aa9.51□□□□□ -0.89
VPS35-203ENST00000562420 POTEMA6NI47 508 aa9.5□□□□□ -0.89
VPS35-203ENST00000562420 RASEFQ8IZ41 740 aa9.49□□□□□ -0.89
VPS35-203ENST00000562420 TRIM41Q8WV44 630 aa9.49□□□□□ -0.89
VPS35-203ENST00000562420 PCDH10Q9P2E7 1040 aa9.48□□□□□ -0.89
VPS35-203ENST00000562420 ATMINO43313 823 aaPredicted RBP9.45□□□□□ -0.9
VPS35-203ENST00000562420 ASTLQ6HA08 431 aaPredicted RBP9.44□□□□□ -0.9
VPS35-203ENST00000562420 POTEGQ6S5H5 508 aa9.44□□□□□ -0.9
VPS35-203ENST00000562420 METRNQ9UJH8 293 aa9.44□□□□□ -0.9
VPS35-203ENST00000562420 CCDC61Q9Y6R9 512 aa9.43□□□□□ -0.9
VPS35-203ENST00000562420 CHRM1P11229 460 aaPredicted RBP9.41□□□□□ -0.9
VPS35-203ENST00000562420 PKD2Q13563 968 aa9.41□□□□□ -0.9
VPS35-203ENST00000562420 DCAF8Q5TAQ9 597 aa9.41□□□□□ -0.9
VPS35-203ENST00000562420 RTN4Q9NQC3 1192 aaKnown RBP9.4□□□□□ -0.9
VPS35-203ENST00000562420 CIZ1Q9ULV3 898 aaPredicted RBP9.4□□□□□ -0.9
VPS35-203ENST00000562420 POTEJP0CG39 1038 aa9.39□□□□□ -0.91
VPS35-203ENST00000562420 ATN1P54259 1190 aaPredicted RBP9.39□□□□□ -0.91
VPS35-203ENST00000562420 SLC39A7Q92504 469 aa9.39□□□□□ -0.91
VPS35-203ENST00000562420 KIF12Q96FN5 646 aa9.39□□□□□ -0.91
VPS35-203ENST00000562420 C7P10643 843 aa9.38□□□□□ -0.91
VPS35-203ENST00000562420 TRPC6Q9Y210 931 aa9.38□□□□□ -0.91
VPS35-203ENST00000562420 MAP3K13O43283 966 aa9.35□□□□□ -0.91
VPS35-203ENST00000562420 SGIP1Q9BQI5 828 aa9.35□□□□□ -0.91
VPS35-203ENST00000562420 BMP2KQ9NSY1 1161 aaPredicted RBP9.34□□□□□ -0.91
VPS35-203ENST00000562420 ECM2O94769 699 aaPredicted RBP9.33□□□□□ -0.92
VPS35-203ENST00000562420 POTEFA5A3E0 1075 aa9.29□□□□□ -0.92
VPS35-203ENST00000562420 PYGBP11216 843 aa9.29□□□□□ -0.92
VPS35-203ENST00000562420 MAMSTRQ6ZN01 415 aa9.28□□□□□ -0.92
VPS35-203ENST00000562420 ZNF467Q7Z7K2 595 aaPredicted RBP9.28□□□□□ -0.92
VPS35-203ENST00000562420 TAOK2Q9UL54 1235 aa9.26□□□□□ -0.93
VPS35-203ENST00000562420 TIE1P35590 1138 aa9.25□□□□□ -0.93
VPS35-203ENST00000562420 FAM163AQ96GL9 167 aaPredicted RBP9.25□□□□□ -0.93
VPS35-203ENST00000562420 SCUBE2Q9NQ36 999 aa9.25□□□□□ -0.93
VPS35-203ENST00000562420 TTLL13PA6NNM8 815 aa9.24□□□□□ -0.93
VPS35-203ENST00000562420 RIOK3O14730 519 aaKnown RBP9.24□□□□□ -0.93
VPS35-203ENST00000562420 RNF25Q96BH1 459 aaPredicted RBP9.24□□□□□ -0.93
VPS35-203ENST00000562420 PCDHB13Q9Y5F0 798 aa9.24□□□□□ -0.93
VPS35-203ENST00000562420 RGL2O15211 777 aa9.23□□□□□ -0.93
VPS35-203ENST00000562420 COLQQ9Y215 455 aaPredicted RBP9.23□□□□□ -0.93
VPS35-203ENST00000562420 SEC24BO95487 1268 aa9.21□□□□□ -0.94
VPS35-203ENST00000562420 VGFO15240 615 aaPredicted RBP9.2□□□□□ -0.94
VPS35-203ENST00000562420 LCE2DQ5TA82 110 aaPredicted RBP9.2□□□□□ -0.94
VPS35-203ENST00000562420 IFNL1Q8IU54 200 aa9.2□□□□□ -0.94
VPS35-203ENST00000562420 TRIM35Q9UPQ4 493 aa9.19□□□□□ -0.94
VPS35-203ENST00000562420 PDAP1Q13442 181 aaKnown RBP9.17□□□□□ -0.94
VPS35-203ENST00000562420 PCDHB8Q9UN66 801 aa9.15□□□□□ -0.94
VPS35-203ENST00000562420 TMEM106CQ9BVX2 250 aa9.13□□□□□ -0.95
VPS35-203ENST00000562420 PSEN1P49768 467 aa9.12□□□□□ -0.95
VPS35-203ENST00000562420 HS6ST3Q8IZP7 471 aa9.12□□□□□ -0.95
VPS35-203ENST00000562420 DNAJC5Q9H3Z4 198 aa9.12□□□□□ -0.95
VPS35-203ENST00000562420 IER5LQ5T953 404 aa9.11□□□□□ -0.95
VPS35-203ENST00000562420 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.09□□□□□ -0.95
VPS35-203ENST00000562420 ZFP91Q96JP5 570 aaPredicted RBP9.09□□□□□ -0.95
VPS35-203ENST00000562420 DCAF8L2P0C7V8 631 aa9.06□□□□□ -0.96
VPS35-203ENST00000562420 PLCG2P16885 1265 aa9.06□□□□□ -0.96
VPS35-203ENST00000562420 SLAIN1Q8ND83 568 aa9.06□□□□□ -0.96
VPS35-203ENST00000562420 STK25O00506 426 aa9.05□□□□□ -0.96
VPS35-203ENST00000562420 BCL11BQ9C0K0 894 aaPredicted RBP9.05□□□□□ -0.96
VPS35-203ENST00000562420 CHGAP10645 457 aaKnown RBP9.04□□□□□ -0.96
VPS35-203ENST00000562420 IRX5P78411 483 aaPredicted RBP9.02□□□□□ -0.97
VPS35-203ENST00000562420 STK24Q9Y6E0 443 aa9.01□□□□□ -0.97
VPS35-203ENST00000562420 CDAN1Q8IWY9 1227 aa9□□□□□ -0.97
VPS35-203ENST00000562420 BBXQ8WY36 941 aaPredicted RBP9□□□□□ -0.97
VPS35-203ENST00000562420 ST18O60284 1047 aa8.99□□□□□ -0.97
VPS35-203ENST00000562420 OCEL1Q9H607 264 aa8.98□□□□□ -0.97
VPS35-203ENST00000562420 CABP2Q9NPB3 220 aa8.98□□□□□ -0.97
VPS35-203ENST00000562420 SOX12O15370 315 aa8.97□□□□□ -0.97
VPS35-203ENST00000562420 GOLGA2Q08379 1002 aa8.97□□□□□ -0.97
VPS35-203ENST00000562420 RYDENQ9NUL5 291 aaKnown RBP8.96□□□□□ -0.98
VPS35-203ENST00000562420 ILDR1Q86SU0 546 aaPredicted RBP8.95□□□□□ -0.98
VPS35-203ENST00000562420 MKRN3Q13064 507 aaKnown RBP8.94□□□□□ -0.98
VPS35-203ENST00000562420 EFCAB3Q8N7B9 438 aa8.93□□□□□ -0.98
VPS35-203ENST00000562420 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.93□□□□□ -0.98
VPS35-203ENST00000562420 NKX1-1Q15270 411 aaPredicted RBP8.92□□□□□ -0.98
VPS35-203ENST00000562420 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.91□□□□□ -0.98
VPS35-203ENST00000562420 NLRP6P59044 892 aa8.9□□□□□ -0.98
VPS35-203ENST00000562420 MFRPQ9BY79 579 aa8.9□□□□□ -0.98
VPS35-203ENST00000562420 FBXO22Q8NEZ5 403 aa8.89□□□□□ -0.99
VPS35-203ENST00000562420 PDCD7Q8N8D1 485 aaKnown RBP8.88□□□□□ -0.99
VPS35-203ENST00000562420 MARVELD3Q96A59 401 aa8.87□□□□□ -0.99
VPS35-203ENST00000562420 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.86□□□□□ -0.99
VPS35-203ENST00000562420 GTPBP6O43824 516 aaPredicted RBP8.85□□□□□ -0.99
VPS35-203ENST00000562420 SPRYD3Q8NCJ5 442 aa8.85□□□□□ -0.99
VPS35-203ENST00000562420 PHF8Q9UPP1 1060 aa8.85□□□□□ -0.99
VPS35-203ENST00000562420 SNPHO15079 494 aa8.84□□□□□ -0.99
VPS35-203ENST00000562420 MS4A4AQ96JQ5 239 aa8.83□□□□□ -1
VPS35-203ENST00000562420 PLCB2Q00722 1185 aa8.82□□□□□ -1
VPS35-203ENST00000562420 C3orf67Q6ZVT6 689 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms