RNA–Protein interactions for RNA: ENST00000561731.1

PTPN9-202, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 3

Gene PTPN9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-202ENST00000561731 CCDC61Q9Y6R9 512 aa14.06□□□□□ -0.16
PTPN9-202ENST00000561731 RASEFQ8IZ41 740 aa14.03□□□□□ -0.16
PTPN9-202ENST00000561731 MS4A3Q96HJ5 214 aa14.03□□□□□ -0.16
PTPN9-202ENST00000561731 KIF12Q96FN5 646 aa13.96□□□□□ -0.17
PTPN9-202ENST00000561731 NUBP1P53384 320 aa13.94□□□□□ -0.18
PTPN9-202ENST00000561731 ASTLQ6HA08 431 aaPredicted RBP13.9□□□□□ -0.18
PTPN9-202ENST00000561731 FAM212AQ96EL1 285 aa13.89□□□□□ -0.19
PTPN9-202ENST00000561731 MAP3K13O43283 966 aa13.88□□□□□ -0.19
PTPN9-202ENST00000561731 ATMINO43313 823 aaPredicted RBP13.87□□□□□ -0.19
PTPN9-202ENST00000561731 VASPP50552 380 aaPredicted RBP13.86□□□□□ -0.19
PTPN9-202ENST00000561731 PELP1Q8IZL8 1130 aaKnown RBP13.85□□□□□ -0.19
PTPN9-202ENST00000561731 SLC39A7Q92504 469 aa13.81□□□□□ -0.2
PTPN9-202ENST00000561731 SGIP1Q9BQI5 828 aa13.81□□□□□ -0.2
PTPN9-202ENST00000561731 KLHL34Q8N239 644 aa13.79□□□□□ -0.2
PTPN9-202ENST00000561731 METRNQ9UJH8 293 aa13.79□□□□□ -0.2
PTPN9-202ENST00000561731 PCDHB13Q9Y5F0 798 aa13.79□□□□□ -0.2
PTPN9-202ENST00000561731 C7P10643 843 aa13.78□□□□□ -0.2
PTPN9-202ENST00000561731 TIE1P35590 1138 aa13.78□□□□□ -0.2
PTPN9-202ENST00000561731 BMP2KQ9NSY1 1161 aaPredicted RBP13.78□□□□□ -0.2
PTPN9-202ENST00000561731 TRPC6Q9Y210 931 aa13.78□□□□□ -0.2
PTPN9-202ENST00000561731 ATN1P54259 1190 aaPredicted RBP13.77□□□□□ -0.21
PTPN9-202ENST00000561731 DCAF8Q5TAQ9 597 aa13.76□□□□□ -0.21
PTPN9-202ENST00000561731 POTEB2H3BUK9 544 aa13.72□□□□□ -0.21
PTPN9-202ENST00000561731 TTLL13PA6NNM8 815 aa13.69□□□□□ -0.22
PTPN9-202ENST00000561731 IFNL1Q8IU54 200 aa13.69□□□□□ -0.22
PTPN9-202ENST00000561731 PYGBP11216 843 aa13.66□□□□□ -0.22
PTPN9-202ENST00000561731 GSE1Q14687 1217 aa13.66□□□□□ -0.22
PTPN9-202ENST00000561731 OTUD5Q96G74 571 aa13.66□□□□□ -0.22
PTPN9-202ENST00000561731 TRIM35Q9UPQ4 493 aa13.61□□□□□ -0.23
PTPN9-202ENST00000561731 IFNLR1Q8IU57 520 aaPredicted RBP13.59□□□□□ -0.23
PTPN9-202ENST00000561731 TMEM106CQ9BVX2 250 aa13.59□□□□□ -0.23
PTPN9-202ENST00000561731 MAMSTRQ6ZN01 415 aa13.58□□□□□ -0.24
PTPN9-202ENST00000561731 SEC24BO95487 1268 aa13.57□□□□□ -0.24
PTPN9-202ENST00000561731 IER5LQ5T953 404 aa13.57□□□□□ -0.24
PTPN9-202ENST00000561731 SPOCK2Q92563 424 aa13.57□□□□□ -0.24
PTPN9-202ENST00000561731 POTEFA5A3E0 1075 aa13.55□□□□□ -0.24
PTPN9-202ENST00000561731 POTEJP0CG39 1038 aa13.54□□□□□ -0.24
PTPN9-202ENST00000561731 PCDHB8Q9UN66 801 aa13.53□□□□□ -0.24
PTPN9-202ENST00000561731 SCUBE2Q9NQ36 999 aa13.52□□□□□ -0.25
PTPN9-202ENST00000561731 ZNF467Q7Z7K2 595 aaPredicted RBP13.51□□□□□ -0.25
PTPN9-202ENST00000561731 CHRM1P11229 460 aaPredicted RBP13.5□□□□□ -0.25
PTPN9-202ENST00000561731 COLQQ9Y215 455 aaPredicted RBP13.5□□□□□ -0.25
PTPN9-202ENST00000561731 CIZ1Q9ULV3 898 aaPredicted RBP13.48□□□□□ -0.25
PTPN9-202ENST00000561731 PLCG2P16885 1265 aa13.43□□□□□ -0.26
PTPN9-202ENST00000561731 IRX5P78411 483 aaPredicted RBP13.39□□□□□ -0.27
PTPN9-202ENST00000561731 PSEN1P49768 467 aa13.36□□□□□ -0.27
PTPN9-202ENST00000561731 GOLGA2Q08379 1002 aa13.36□□□□□ -0.27
PTPN9-202ENST00000561731 OCEL1Q9H607 264 aa13.35□□□□□ -0.27
PTPN9-202ENST00000561731 PDAP1Q13442 181 aaKnown RBP13.33□□□□□ -0.28
PTPN9-202ENST00000561731 TRIM41Q8WV44 630 aa13.33□□□□□ -0.28
PTPN9-202ENST00000561731 MKRN3Q13064 507 aaKnown RBP13.31□□□□□ -0.28
PTPN9-202ENST00000561731 POTEMA6NI47 508 aa13.25□□□□□ -0.29
PTPN9-202ENST00000561731 SLAIN1Q8ND83 568 aa13.24□□□□□ -0.29
PTPN9-202ENST00000561731 FAM163AQ96GL9 167 aaPredicted RBP13.23□□□□□ -0.29
PTPN9-202ENST00000561731 POTEGQ6S5H5 508 aa13.22□□□□□ -0.29
PTPN9-202ENST00000561731 PDCD7Q8N8D1 485 aaKnown RBP13.22□□□□□ -0.29
PTPN9-202ENST00000561731 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.21□□□□□ -0.29
PTPN9-202ENST00000561731 CABP2Q9NPB3 220 aa13.2□□□□□ -0.3
PTPN9-202ENST00000561731 L3MBTL3Q96JM7 780 aaPredicted RBP13.17□□□□□ -0.3
PTPN9-202ENST00000561731 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.17□□□□□ -0.3
PTPN9-202ENST00000561731 LCE2DQ5TA82 110 aaPredicted RBP13.16□□□□□ -0.3
PTPN9-202ENST00000561731 C3orf67Q6ZVT6 689 aa13.13□□□□□ -0.31
PTPN9-202ENST00000561731 RIOK3O14730 519 aaKnown RBP13.12□□□□□ -0.31
PTPN9-202ENST00000561731 ILDR1Q86SU0 546 aaPredicted RBP13.12□□□□□ -0.31
PTPN9-202ENST00000561731 RNF25Q96BH1 459 aaPredicted RBP13.08□□□□□ -0.32
PTPN9-202ENST00000561731 VGFO15240 615 aaPredicted RBP13.06□□□□□ -0.32
PTPN9-202ENST00000561731 PCDH10Q9P2E7 1040 aa13.06□□□□□ -0.32
PTPN9-202ENST00000561731 G3V3G9 751 aa13.05□□□□□ -0.32
PTPN9-202ENST00000561731 SNPHO15079 494 aa13.05□□□□□ -0.32
PTPN9-202ENST00000561731 EFCAB3Q8N7B9 438 aa13.05□□□□□ -0.32
PTPN9-202ENST00000561731 PLSCR2Q9NRY7 297 aa13.05□□□□□ -0.32
PTPN9-202ENST00000561731 DPY19L2Q6NUT2 758 aa13.04□□□□□ -0.32
PTPN9-202ENST00000561731 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.02□□□□□ -0.33
PTPN9-202ENST00000561731 ST18O60284 1047 aa13.02□□□□□ -0.33
PTPN9-202ENST00000561731 ZFP91Q96JP5 570 aaPredicted RBP13.02□□□□□ -0.33
PTPN9-202ENST00000561731 BOLA1Q9Y3E2 137 aa13.01□□□□□ -0.33
PTPN9-202ENST00000561731 TAOK2Q9UL54 1235 aa13□□□□□ -0.33
PTPN9-202ENST00000561731 SOX12O15370 315 aa12.96□□□□□ -0.33
PTPN9-202ENST00000561731 ECM2O94769 699 aaPredicted RBP12.96□□□□□ -0.33
PTPN9-202ENST00000561731 TMEM121BQ9BXQ6 578 aaPredicted RBP12.95□□□□□ -0.34
PTPN9-202ENST00000561731 BCL11BQ9C0K0 894 aaPredicted RBP12.9□□□□□ -0.34
PTPN9-202ENST00000561731 PHF8Q9UPP1 1060 aa12.88□□□□□ -0.35
PTPN9-202ENST00000561731 PKD2Q13563 968 aa12.87□□□□□ -0.35
PTPN9-202ENST00000561731 CDAN1Q8IWY9 1227 aa12.87□□□□□ -0.35
PTPN9-202ENST00000561731 STK24Q9Y6E0 443 aa12.87□□□□□ -0.35
PTPN9-202ENST00000561731 STK25O00506 426 aa12.84□□□□□ -0.35
PTPN9-202ENST00000561731 MICALL2Q8IY33 904 aa12.84□□□□□ -0.35
PTPN9-202ENST00000561731 MS4A4AQ96JQ5 239 aa12.84□□□□□ -0.35
PTPN9-202ENST00000561731 NLRP6P59044 892 aa12.83□□□□□ -0.36
PTPN9-202ENST00000561731 RGL2O15211 777 aa12.82□□□□□ -0.36
PTPN9-202ENST00000561731 MARVELD3Q96A59 401 aa12.82□□□□□ -0.36
PTPN9-202ENST00000561731 EMP3P54852 163 aa12.77□□□□□ -0.37
PTPN9-202ENST00000561731 FBXO22Q8NEZ5 403 aa12.76□□□□□ -0.37
PTPN9-202ENST00000561731 HOXB3P14651 431 aaPredicted RBP12.75□□□□□ -0.37
PTPN9-202ENST00000561731 DOK7Q18PE1 504 aa12.75□□□□□ -0.37
PTPN9-202ENST00000561731 ZNF710Q8N1W2 664 aa12.74□□□□□ -0.37
PTPN9-202ENST00000561731 MFRPQ9BY79 579 aa12.74□□□□□ -0.37
PTPN9-202ENST00000561731 TMEM92Q6UXU6 159 aa12.72□□□□□ -0.37
PTPN9-202ENST00000561731 RIMBP2O15034 1052 aa12.7□□□□□ -0.38
PTPN9-202ENST00000561731 FAM205CA6NFA0 338 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms