RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-215ENST00000561436 FAM212AQ96EL1 285 aa9.98□□□□□ -0.81
HERC1-215ENST00000561436 CIZ1Q9ULV3 898 aaPredicted RBP9.98□□□□□ -0.81
HERC1-215ENST00000561436 CCDC61Q9Y6R9 512 aa9.98□□□□□ -0.81
HERC1-215ENST00000561436 ZNF579Q8NAF0 562 aaKnown RBP9.97□□□□□ -0.81
HERC1-215ENST00000561436 GABBR2O75899 941 aa9.95□□□□□ -0.82
HERC1-215ENST00000561436 PYGBP11216 843 aa9.95□□□□□ -0.82
HERC1-215ENST00000561436 GALR2O43603 387 aaPredicted RBP9.92□□□□□ -0.82
HERC1-215ENST00000561436 MAP3K13O43283 966 aa9.91□□□□□ -0.82
HERC1-215ENST00000561436 KIF12Q96FN5 646 aa9.9□□□□□ -0.82
HERC1-215ENST00000561436 MS4A3Q96HJ5 214 aa9.9□□□□□ -0.82
HERC1-215ENST00000561436 TRPC6Q9Y210 931 aa9.88□□□□□ -0.83
HERC1-215ENST00000561436 GSE1Q14687 1217 aa9.87□□□□□ -0.83
HERC1-215ENST00000561436 PCDHB8Q9UN66 801 aa9.84□□□□□ -0.83
HERC1-215ENST00000561436 PCDHB13Q9Y5F0 798 aa9.84□□□□□ -0.83
HERC1-215ENST00000561436 PKD2Q13563 968 aa9.83□□□□□ -0.84
HERC1-215ENST00000561436 IFNL1Q8IU54 200 aa9.82□□□□□ -0.84
HERC1-215ENST00000561436 POTEIP0CG38 1075 aa9.79□□□□□ -0.84
HERC1-215ENST00000561436 ECM2O94769 699 aaPredicted RBP9.77□□□□□ -0.85
HERC1-215ENST00000561436 RNF25Q96BH1 459 aaPredicted RBP9.77□□□□□ -0.85
HERC1-215ENST00000561436 DCBLD2Q96PD2 775 aa9.74□□□□□ -0.85
HERC1-215ENST00000561436 RGL2O15211 777 aa9.73□□□□□ -0.85
HERC1-215ENST00000561436 CHRM1P11229 460 aaPredicted RBP9.73□□□□□ -0.85
HERC1-215ENST00000561436 RTN4Q9NQC3 1192 aaKnown RBP9.73□□□□□ -0.85
HERC1-215ENST00000561436 BMP2KQ9NSY1 1161 aaPredicted RBP9.73□□□□□ -0.85
HERC1-215ENST00000561436 PELP1Q8IZL8 1130 aaKnown RBP9.71□□□□□ -0.86
HERC1-215ENST00000561436 CLCN6P51797 869 aa9.69□□□□□ -0.86
HERC1-215ENST00000561436 ATN1P54259 1190 aaPredicted RBP9.69□□□□□ -0.86
HERC1-215ENST00000561436 SGIP1Q9BQI5 828 aa9.69□□□□□ -0.86
HERC1-215ENST00000561436 TMEM106CQ9BVX2 250 aa9.69□□□□□ -0.86
HERC1-215ENST00000561436 TTLL13PA6NNM8 815 aa9.68□□□□□ -0.86
HERC1-215ENST00000561436 ATMINO43313 823 aaPredicted RBP9.68□□□□□ -0.86
HERC1-215ENST00000561436 ZNF467Q7Z7K2 595 aaPredicted RBP9.67□□□□□ -0.86
HERC1-215ENST00000561436 TRIM41Q8WV44 630 aa9.67□□□□□ -0.86
HERC1-215ENST00000561436 PSEN1P49768 467 aa9.66□□□□□ -0.86
HERC1-215ENST00000561436 RIOK3O14730 519 aaKnown RBP9.65□□□□□ -0.86
HERC1-215ENST00000561436 TIE1P35590 1138 aa9.64□□□□□ -0.87
HERC1-215ENST00000561436 ASTLQ6HA08 431 aaPredicted RBP9.64□□□□□ -0.87
HERC1-215ENST00000561436 TRIM35Q9UPQ4 493 aa9.63□□□□□ -0.87
HERC1-215ENST00000561436 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.62□□□□□ -0.87
HERC1-215ENST00000561436 AMER1Q5JTC6 1135 aaPredicted RBP9.62□□□□□ -0.87
HERC1-215ENST00000561436 ZFP91Q96JP5 570 aaPredicted RBP9.62□□□□□ -0.87
HERC1-215ENST00000561436 PDAP1Q13442 181 aaKnown RBP9.61□□□□□ -0.87
HERC1-215ENST00000561436 DCAF8L2P0C7V8 631 aa9.6□□□□□ -0.87
HERC1-215ENST00000561436 CABP2Q9NPB3 220 aa9.58□□□□□ -0.88
HERC1-215ENST00000561436 VGFO15240 615 aaPredicted RBP9.57□□□□□ -0.88
HERC1-215ENST00000561436 METRNQ9UJH8 293 aa9.56□□□□□ -0.88
HERC1-215ENST00000561436 BCL11BQ9C0K0 894 aaPredicted RBP9.55□□□□□ -0.88
HERC1-215ENST00000561436 STK25O00506 426 aa9.54□□□□□ -0.88
HERC1-215ENST00000561436 COLQQ9Y215 455 aaPredicted RBP9.54□□□□□ -0.88
HERC1-215ENST00000561436 STK24Q9Y6E0 443 aa9.54□□□□□ -0.88
HERC1-215ENST00000561436 POTEFA5A3E0 1075 aa9.53□□□□□ -0.88
HERC1-215ENST00000561436 EFCAB3Q8N7B9 438 aa9.52□□□□□ -0.89
HERC1-215ENST00000561436 POTEB2H3BUK9 544 aa9.51□□□□□ -0.89
HERC1-215ENST00000561436 CHGAP10645 457 aaKnown RBP9.5□□□□□ -0.89
HERC1-215ENST00000561436 GOLGA2Q08379 1002 aa9.5□□□□□ -0.89
HERC1-215ENST00000561436 SLC39A7Q92504 469 aa9.5□□□□□ -0.89
HERC1-215ENST00000561436 SEC24BO95487 1268 aa9.47□□□□□ -0.89
HERC1-215ENST00000561436 C7P10643 843 aa9.47□□□□□ -0.89
HERC1-215ENST00000561436 MKRN3Q13064 507 aaKnown RBP9.47□□□□□ -0.89
HERC1-215ENST00000561436 IRX5P78411 483 aaPredicted RBP9.46□□□□□ -0.9
HERC1-215ENST00000561436 POTEJP0CG39 1038 aa9.45□□□□□ -0.9
HERC1-215ENST00000561436 DPY19L2Q6NUT2 758 aa9.44□□□□□ -0.9
HERC1-215ENST00000561436 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.44□□□□□ -0.9
HERC1-215ENST00000561436 PHF8Q9UPP1 1060 aa9.44□□□□□ -0.9
HERC1-215ENST00000561436 PLCG2P16885 1265 aa9.42□□□□□ -0.9
HERC1-215ENST00000561436 IER5LQ5T953 404 aa9.42□□□□□ -0.9
HERC1-215ENST00000561436 LHX8Q68G74 356 aa9.42□□□□□ -0.9
HERC1-215ENST00000561436 HS6ST3Q8IZP7 471 aa9.42□□□□□ -0.9
HERC1-215ENST00000561436 PDCD7Q8N8D1 485 aaKnown RBP9.42□□□□□ -0.9
HERC1-215ENST00000561436 TAOK2Q9UL54 1235 aa9.42□□□□□ -0.9
HERC1-215ENST00000561436 NKX1-1Q15270 411 aaPredicted RBP9.4□□□□□ -0.9
HERC1-215ENST00000561436 MS4A4AQ96JQ5 239 aa9.39□□□□□ -0.91
HERC1-215ENST00000561436 MFRPQ9BY79 579 aa9.39□□□□□ -0.91
HERC1-215ENST00000561436 OCEL1Q9H607 264 aa9.39□□□□□ -0.91
HERC1-215ENST00000561436 FBXO22Q8NEZ5 403 aa9.35□□□□□ -0.91
HERC1-215ENST00000561436 ILDR1Q86SU0 546 aaPredicted RBP9.34□□□□□ -0.91
HERC1-215ENST00000561436 SOX12O15370 315 aa9.33□□□□□ -0.92
HERC1-215ENST00000561436 OTUD5Q96G74 571 aa9.32□□□□□ -0.92
HERC1-215ENST00000561436 PPP1R37O75864 691 aa9.31□□□□□ -0.92
HERC1-215ENST00000561436 NLRP6P59044 892 aa9.3□□□□□ -0.92
HERC1-215ENST00000561436 BOLA1Q9Y3E2 137 aa9.26□□□□□ -0.93
HERC1-215ENST00000561436 GTPBP6O43824 516 aaPredicted RBP9.24□□□□□ -0.93
HERC1-215ENST00000561436 MICALL2Q8IY33 904 aa9.24□□□□□ -0.93
HERC1-215ENST00000561436 DNAJC5Q9H3Z4 198 aa9.23□□□□□ -0.93
HERC1-215ENST00000561436 L3MBTL3Q96JM7 780 aaPredicted RBP9.22□□□□□ -0.93
HERC1-215ENST00000561436 SCUBE2Q9NQ36 999 aa9.22□□□□□ -0.93
HERC1-215ENST00000561436 BBXQ8WY36 941 aaPredicted RBP9.21□□□□□ -0.94
HERC1-215ENST00000561436 G3V3G9 751 aa9.2□□□□□ -0.94
HERC1-215ENST00000561436 TMEM92Q6UXU6 159 aa9.2□□□□□ -0.94
HERC1-215ENST00000561436 C3orf67Q6ZVT6 689 aa9.2□□□□□ -0.94
HERC1-215ENST00000561436 SLAIN1Q8ND83 568 aa9.2□□□□□ -0.94
HERC1-215ENST00000561436 CFAP44Q96MT7 982 aa9.19□□□□□ -0.94
HERC1-215ENST00000561436 MAMSTRQ6ZN01 415 aa9.18□□□□□ -0.94
HERC1-215ENST00000561436 PAXIP1Q6ZW49 1069 aaPredicted RBP9.18□□□□□ -0.94
HERC1-215ENST00000561436 TMEM121BQ9BXQ6 578 aaPredicted RBP9.18□□□□□ -0.94
HERC1-215ENST00000561436 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.18□□□□□ -0.94
HERC1-215ENST00000561436 SLC24A1O60721 1099 aa9.17□□□□□ -0.94
HERC1-215ENST00000561436 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.14□□□□□ -0.95
HERC1-215ENST00000561436 CADPS2Q86UW7 1296 aa9.12□□□□□ -0.95
HERC1-215ENST00000561436 SPRYD3Q8NCJ5 442 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms