RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	PLEKHG5	O94827	1062 aa		11.91	□□□□□ -0.5
SPG11-222	ENST00000560435	ATMIN	O43313	823 aa	Predicted RBP	11.9	□□□□□ -0.5
SPG11-222	ENST00000560435	MIER1	Q8N108	512 aa		11.87	□□□□□ -0.51
SPG11-222	ENST00000560435	SLC39A7	Q92504	469 aa		11.87	□□□□□ -0.51
SPG11-222	ENST00000560435	METRN	Q9UJH8	293 aa		11.86	□□□□□ -0.51
SPG11-222	ENST00000560435	C7	P10643	843 aa		11.85	□□□□□ -0.51
SPG11-222	ENST00000560435	KIF12	Q96FN5	646 aa		11.85	□□□□□ -0.51
SPG11-222	ENST00000560435	RASEF	Q8IZ41	740 aa		11.81	□□□□□ -0.52
SPG11-222	ENST00000560435	ATN1	P54259	1190 aa	Predicted RBP	11.78	□□□□□ -0.52
SPG11-222	ENST00000560435	PLCD3	Q8N3E9	789 aa		11.78	□□□□□ -0.52
SPG11-222	ENST00000560435	MAP3K13	O43283	966 aa		11.76	□□□□□ -0.53
SPG11-222	ENST00000560435	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.76	□□□□□ -0.53
SPG11-222	ENST00000560435	POTEJ	P0CG39	1038 aa		11.74	□□□□□ -0.53
SPG11-222	ENST00000560435	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.74	□□□□□ -0.53
SPG11-222	ENST00000560435	TRPC6	Q9Y210	931 aa		11.74	□□□□□ -0.53
SPG11-222	ENST00000560435	TIE1	P35590	1138 aa		11.73	□□□□□ -0.53
SPG11-222	ENST00000560435	MAMSTR	Q6ZN01	415 aa		11.73	□□□□□ -0.53
SPG11-222	ENST00000560435	NUBP1	P53384	320 aa		11.69	□□□□□ -0.54
SPG11-222	ENST00000560435	FKBP8	Q14318	412 aa		11.68	□□□□□ -0.54
SPG11-222	ENST00000560435	SGIP1	Q9BQI5	828 aa		11.68	□□□□□ -0.54
SPG11-222	ENST00000560435	POTEF	A5A3E0	1075 aa		11.66	□□□□□ -0.54
SPG11-222	ENST00000560435	POTEM	A6NI47	508 aa		11.65	□□□□□ -0.54
SPG11-222	ENST00000560435	TTLL13P	A6NNM8	815 aa		11.65	□□□□□ -0.54
SPG11-222	ENST00000560435	SCUBE2	Q9NQ36	999 aa		11.65	□□□□□ -0.54
SPG11-222	ENST00000560435	PLSCR2	Q9NRY7	297 aa		11.65	□□□□□ -0.54
SPG11-222	ENST00000560435	PCDHB13	Q9Y5F0	798 aa		11.64	□□□□□ -0.55
SPG11-222	ENST00000560435	POTEG	Q6S5H5	508 aa		11.62	□□□□□ -0.55
SPG11-222	ENST00000560435	FAM212A	Q96EL1	285 aa		11.61	□□□□□ -0.55
SPG11-222	ENST00000560435	IER5L	Q5T953	404 aa		11.58	□□□□□ -0.56
SPG11-222	ENST00000560435	SEC24B	O95487	1268 aa		11.57	□□□□□ -0.56
SPG11-222	ENST00000560435	TRIM35	Q9UPQ4	493 aa		11.57	□□□□□ -0.56
SPG11-222	ENST00000560435	COLQ	Q9Y215	455 aa	Predicted RBP	11.57	□□□□□ -0.56
SPG11-222	ENST00000560435	IFNL1	Q8IU54	200 aa		11.56	□□□□□ -0.56
SPG11-222	ENST00000560435	LCE2D	Q5TA82	110 aa	Predicted RBP	11.52	□□□□□ -0.57
SPG11-222	ENST00000560435	FBXO3	Q9UK99	471 aa		11.51	□□□□□ -0.57
SPG11-222	ENST00000560435	TMEM106C	Q9BVX2	250 aa		11.5	□□□□□ -0.57
SPG11-222	ENST00000560435	PCDH10	Q9P2E7	1040 aa		11.5	□□□□□ -0.57
SPG11-222	ENST00000560435	FAM163A	Q96GL9	167 aa	Predicted RBP	11.49	□□□□□ -0.57
SPG11-222	ENST00000560435	DCAF8	Q5TAQ9	597 aa		11.46	□□□□□ -0.57
SPG11-222	ENST00000560435	PYGB	P11216	843 aa		11.43	□□□□□ -0.58
SPG11-222	ENST00000560435	PLCG2	P16885	1265 aa		11.42	□□□□□ -0.58
SPG11-222	ENST00000560435	IRX5	P78411	483 aa	Predicted RBP	11.4	□□□□□ -0.58
SPG11-222	ENST00000560435	VASP	P50552	380 aa	Predicted RBP	11.38	□□□□□ -0.59
SPG11-222	ENST00000560435	SLAIN1	Q8ND83	568 aa		11.36	□□□□□ -0.59
SPG11-222	ENST00000560435	PCDHB8	Q9UN66	801 aa		11.36	□□□□□ -0.59
SPG11-222	ENST00000560435	GSE1	Q14687	1217 aa		11.34	□□□□□ -0.59
SPG11-222	ENST00000560435	KLHL34	Q8N239	644 aa		11.34	□□□□□ -0.59
SPG11-222	ENST00000560435	OCEL1	Q9H607	264 aa		11.34	□□□□□ -0.59
SPG11-222	ENST00000560435	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.3	□□□□□ -0.6
SPG11-222	ENST00000560435	CHRM1	P11229	460 aa	Predicted RBP	11.27	□□□□□ -0.61
SPG11-222	ENST00000560435	ST18	O60284	1047 aa		11.26	□□□□□ -0.61
SPG11-222	ENST00000560435	CDAN1	Q8IWY9	1227 aa		11.23	□□□□□ -0.61
SPG11-222	ENST00000560435	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.23	□□□□□ -0.61
SPG11-222	ENST00000560435	PDCD7	Q8N8D1	485 aa	Known RBP	11.22	□□□□□ -0.61
SPG11-222	ENST00000560435	GOLGA2	Q08379	1002 aa		11.2	□□□□□ -0.62
SPG11-222	ENST00000560435	MKRN3	Q13064	507 aa	Known RBP	11.2	□□□□□ -0.62
SPG11-222	ENST00000560435	SNPH	O15079	494 aa		11.19	□□□□□ -0.62
SPG11-222	ENST00000560435	PSEN1	P49768	467 aa		11.19	□□□□□ -0.62
SPG11-222	ENST00000560435	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.17	□□□□□ -0.62
SPG11-222	ENST00000560435	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.16	□□□□□ -0.62
SPG11-222	ENST00000560435	SPOCK2	Q92563	424 aa		11.15	□□□□□ -0.62
SPG11-222	ENST00000560435	PDAP1	Q13442	181 aa	Known RBP	11.14	□□□□□ -0.63
SPG11-222	ENST00000560435	C3orf67	Q6ZVT6	689 aa		11.14	□□□□□ -0.63
SPG11-222	ENST00000560435	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.14	□□□□□ -0.63
SPG11-222	ENST00000560435	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.13	□□□□□ -0.63	4e-7	■■■□□ 18.5
SPG11-222	ENST00000560435	ILDR1	Q86SU0	546 aa	Predicted RBP	11.11	□□□□□ -0.63
SPG11-222	ENST00000560435	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.1	□□□□□ -0.63
SPG11-222	ENST00000560435	MARVELD3	Q96A59	401 aa		11.04	□□□□□ -0.64
SPG11-222	ENST00000560435	CABP2	Q9NPB3	220 aa		11.04	□□□□□ -0.64
SPG11-222	ENST00000560435	DPY19L2	Q6NUT2	758 aa		11.01	□□□□□ -0.65
SPG11-222	ENST00000560435	TRIM41	Q8WV44	630 aa		11	□□□□□ -0.65
SPG11-222	ENST00000560435	EMP3	P54852	163 aa		10.98	□□□□□ -0.65
SPG11-222	ENST00000560435	BOLA1	Q9Y3E2	137 aa		10.98	□□□□□ -0.65
SPG11-222	ENST00000560435		G3V3G9	751 aa		10.97	□□□□□ -0.65
SPG11-222	ENST00000560435	SPNS2	Q8IVW8	549 aa		10.96	□□□□□ -0.65
SPG11-222	ENST00000560435	MMRN1	Q13201	1228 aa		10.94	□□□□□ -0.66
SPG11-222	ENST00000560435	EFCAB3	Q8N7B9	438 aa		10.9	□□□□□ -0.66
SPG11-222	ENST00000560435	HS3ST6	Q96QI5	342 aa		10.9	□□□□□ -0.66
SPG11-222	ENST00000560435	HOXB3	P14651	431 aa	Predicted RBP	10.89	□□□□□ -0.67
SPG11-222	ENST00000560435	POTEB3	A0JP26	581 aa		10.88	□□□□□ -0.67
SPG11-222	ENST00000560435	FAM205C	A6NFA0	338 aa		10.88	□□□□□ -0.67
SPG11-222	ENST00000560435	POTEB	Q6S5H4	581 aa		10.88	□□□□□ -0.67
SPG11-222	ENST00000560435	KRTAP3-3	Q9BYR6	98 aa		10.86	□□□□□ -0.67
SPG11-222	ENST00000560435	KRTAP3-2	Q9BYR7	98 aa		10.86	□□□□□ -0.67
SPG11-222	ENST00000560435	DOK7	Q18PE1	504 aa		10.84	□□□□□ -0.67
SPG11-222	ENST00000560435	RIOK3	O14730	519 aa	Known RBP	10.83	□□□□□ -0.68
SPG11-222	ENST00000560435	HOXB1	P14653	301 aa	Predicted RBP	10.83	□□□□□ -0.68
SPG11-222	ENST00000560435	ZNF710	Q8N1W2	664 aa		10.82	□□□□□ -0.68
SPG11-222	ENST00000560435	SOX12	O15370	315 aa		10.81	□□□□□ -0.68
SPG11-222	ENST00000560435	RNF25	Q96BH1	459 aa	Predicted RBP	10.81	□□□□□ -0.68
SPG11-222	ENST00000560435	MICALL2	Q8IY33	904 aa		10.8	□□□□□ -0.68
SPG11-222	ENST00000560435	VGF	O15240	615 aa	Predicted RBP	10.79	□□□□□ -0.68
SPG11-222	ENST00000560435	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.78	□□□□□ -0.68
SPG11-222	ENST00000560435	ZFP91	Q96JP5	570 aa	Predicted RBP	10.78	□□□□□ -0.68
SPG11-222	ENST00000560435	RIMBP2	O15034	1052 aa		10.77	□□□□□ -0.69
SPG11-222	ENST00000560435	MS4A4A	Q96JQ5	239 aa		10.76	□□□□□ -0.69
SPG11-222	ENST00000560435	TMEM92	Q6UXU6	159 aa		10.75	□□□□□ -0.69
SPG11-222	ENST00000560435	PHF8	Q9UPP1	1060 aa		10.74	□□□□□ -0.69
SPG11-222	ENST00000560435	ERBB3	P21860	1342 aa		10.74	□□□□□ -0.69
SPG11-222	ENST00000560435	ZSWIM6	Q9HCJ5	1215 aa		10.72	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms