RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 ZRANB1Q9UGI0 708 aa10.93□□□□□ -0.66
VPS13C-207ENST00000558919 GSE1Q14687 1217 aa10.92□□□□□ -0.66
VPS13C-207ENST00000558919 DCAF8Q5TAQ9 597 aa10.91□□□□□ -0.66
VPS13C-207ENST00000558919 CCDC61Q9Y6R9 512 aa10.89□□□□□ -0.67
VPS13C-207ENST00000558919 ZNF579Q8NAF0 562 aaKnown RBP10.88□□□□□ -0.67
VPS13C-207ENST00000558919 CIZ1Q9ULV3 898 aaPredicted RBP10.86□□□□□ -0.67
VPS13C-207ENST00000558919 CLCN6P51797 869 aa10.84□□□□□ -0.67
VPS13C-207ENST00000558919 TRIM41Q8WV44 630 aa10.81□□□□□ -0.68
VPS13C-207ENST00000558919 PHF12Q96QT6 1004 aa10.8□□□□□ -0.68
VPS13C-207ENST00000558919 CHRM1P11229 460 aaPredicted RBP10.79□□□□□ -0.68
VPS13C-207ENST00000558919 KIF12Q96FN5 646 aa10.78□□□□□ -0.68
VPS13C-207ENST00000558919 PYGBP11216 843 aa10.77□□□□□ -0.69
VPS13C-207ENST00000558919 SGIP1Q9BQI5 828 aa10.76□□□□□ -0.69
VPS13C-207ENST00000558919 PKD2Q13563 968 aa10.75□□□□□ -0.69
VPS13C-207ENST00000558919 GABBR2O75899 941 aa10.74□□□□□ -0.69
VPS13C-207ENST00000558919 MAP3K13O43283 966 aa10.73□□□□□ -0.69
VPS13C-207ENST00000558919 AMER1Q5JTC6 1135 aaPredicted RBP10.73□□□□□ -0.69
VPS13C-207ENST00000558919 ECM2O94769 699 aaPredicted RBP10.7□□□□□ -0.7
VPS13C-207ENST00000558919 PCDHB13Q9Y5F0 798 aa10.7□□□□□ -0.7
VPS13C-207ENST00000558919 MS4A3Q96HJ5 214 aa10.69□□□□□ -0.7
VPS13C-207ENST00000558919 GALR2O43603 387 aaPredicted RBP10.68□□□□□ -0.7
VPS13C-207ENST00000558919 ZNF467Q7Z7K2 595 aaPredicted RBP10.66□□□□□ -0.7
VPS13C-207ENST00000558919 IFNL1Q8IU54 200 aa10.65□□□□□ -0.7
VPS13C-207ENST00000558919 RTN4Q9NQC3 1192 aaKnown RBP10.64□□□□□ -0.71
VPS13C-207ENST00000558919 PCDHB8Q9UN66 801 aa10.62□□□□□ -0.71
VPS13C-207ENST00000558919 RIOK3O14730 519 aaKnown RBP10.6□□□□□ -0.71
VPS13C-207ENST00000558919 RNF25Q96BH1 459 aaPredicted RBP10.6□□□□□ -0.71
VPS13C-207ENST00000558919 RGL2O15211 777 aa10.58□□□□□ -0.72
VPS13C-207ENST00000558919 TIE1P35590 1138 aa10.58□□□□□ -0.72
VPS13C-207ENST00000558919 DCBLD2Q96PD2 775 aa10.57□□□□□ -0.72
VPS13C-207ENST00000558919 TAOK2Q9UL54 1235 aa10.57□□□□□ -0.72
VPS13C-207ENST00000558919 TRPC6Q9Y210 931 aa10.56□□□□□ -0.72
VPS13C-207ENST00000558919 PDAP1Q13442 181 aaKnown RBP10.55□□□□□ -0.72
VPS13C-207ENST00000558919 VGFO15240 615 aaPredicted RBP10.54□□□□□ -0.72
VPS13C-207ENST00000558919 PSEN1P49768 467 aa10.53□□□□□ -0.72
VPS13C-207ENST00000558919 ASTLQ6HA08 431 aaPredicted RBP10.53□□□□□ -0.72
VPS13C-207ENST00000558919 BMP2KQ9NSY1 1161 aaPredicted RBP10.53□□□□□ -0.72
VPS13C-207ENST00000558919 TTLL13PA6NNM8 815 aa10.51□□□□□ -0.73
VPS13C-207ENST00000558919 ATMINO43313 823 aaPredicted RBP10.51□□□□□ -0.73
VPS13C-207ENST00000558919 POTEIP0CG38 1075 aa10.51□□□□□ -0.73
VPS13C-207ENST00000558919 TMEM106CQ9BVX2 250 aa10.5□□□□□ -0.73
VPS13C-207ENST00000558919 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.47□□□□□ -0.73
VPS13C-207ENST00000558919 ATN1P54259 1190 aaPredicted RBP10.47□□□□□ -0.73
VPS13C-207ENST00000558919 ZFP91Q96JP5 570 aaPredicted RBP10.47□□□□□ -0.73
VPS13C-207ENST00000558919 TRIM35Q9UPQ4 493 aa10.44□□□□□ -0.74
VPS13C-207ENST00000558919 PELP1Q8IZL8 1130 aaKnown RBP10.42□□□□□ -0.74
VPS13C-207ENST00000558919 STK25O00506 426 aa10.41□□□□□ -0.74
VPS13C-207ENST00000558919 DCAF8L2P0C7V8 631 aa10.41□□□□□ -0.74
VPS13C-207ENST00000558919 SLC39A7Q92504 469 aa10.4□□□□□ -0.74
VPS13C-207ENST00000558919 BCL11BQ9C0K0 894 aaPredicted RBP10.4□□□□□ -0.74
VPS13C-207ENST00000558919 GOLGA2Q08379 1002 aa10.39□□□□□ -0.75
VPS13C-207ENST00000558919 IER5LQ5T953 404 aa10.39□□□□□ -0.75
VPS13C-207ENST00000558919 HS6ST3Q8IZP7 471 aa10.39□□□□□ -0.75
VPS13C-207ENST00000558919 CABP2Q9NPB3 220 aa10.39□□□□□ -0.75
VPS13C-207ENST00000558919 STK24Q9Y6E0 443 aa10.39□□□□□ -0.75
VPS13C-207ENST00000558919 POTEMA6NI47 508 aa10.38□□□□□ -0.75
VPS13C-207ENST00000558919 C7P10643 843 aa10.37□□□□□ -0.75
VPS13C-207ENST00000558919 CHGAP10645 457 aaKnown RBP10.37□□□□□ -0.75
VPS13C-207ENST00000558919 MKRN3Q13064 507 aaKnown RBP10.36□□□□□ -0.75
VPS13C-207ENST00000558919 PCDH10Q9P2E7 1040 aa10.34□□□□□ -0.75
VPS13C-207ENST00000558919 EFCAB3Q8N7B9 438 aa10.33□□□□□ -0.76
VPS13C-207ENST00000558919 DNAJC5Q9H3Z4 198 aa10.33□□□□□ -0.76
VPS13C-207ENST00000558919 METRNQ9UJH8 293 aa10.33□□□□□ -0.76
VPS13C-207ENST00000558919 SOX12O15370 315 aa10.32□□□□□ -0.76
VPS13C-207ENST00000558919 POTEGQ6S5H5 508 aa10.31□□□□□ -0.76
VPS13C-207ENST00000558919 IRX5P78411 483 aaPredicted RBP10.3□□□□□ -0.76
VPS13C-207ENST00000558919 SEC24BO95487 1268 aa10.29□□□□□ -0.76
VPS13C-207ENST00000558919 ILDR1Q86SU0 546 aaPredicted RBP10.28□□□□□ -0.76
VPS13C-207ENST00000558919 OCEL1Q9H607 264 aa10.28□□□□□ -0.76
VPS13C-207ENST00000558919 POTEFA5A3E0 1075 aa10.27□□□□□ -0.77
VPS13C-207ENST00000558919 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.27□□□□□ -0.771e-7■■■■□ 21.9
VPS13C-207ENST00000558919 PLCG2P16885 1265 aa10.26□□□□□ -0.77
VPS13C-207ENST00000558919 COLQQ9Y215 455 aaPredicted RBP10.25□□□□□ -0.77
VPS13C-207ENST00000558919 NLRP6P59044 892 aa10.24□□□□□ -0.77
VPS13C-207ENST00000558919 PDCD7Q8N8D1 485 aaKnown RBP10.23□□□□□ -0.77
VPS13C-207ENST00000558919 BBXQ8WY36 941 aaPredicted RBP10.23□□□□□ -0.77
VPS13C-207ENST00000558919 MFRPQ9BY79 579 aa10.23□□□□□ -0.77
VPS13C-207ENST00000558919 PHF8Q9UPP1 1060 aa10.23□□□□□ -0.77
VPS13C-207ENST00000558919 NKX1-1Q15270 411 aaPredicted RBP10.21□□□□□ -0.77
VPS13C-207ENST00000558919 FBXO22Q8NEZ5 403 aa10.21□□□□□ -0.77
VPS13C-207ENST00000558919 OTUD5Q96G74 571 aa10.19□□□□□ -0.78
VPS13C-207ENST00000558919 RYDENQ9NUL5 291 aaKnown RBP10.19□□□□□ -0.78
VPS13C-207ENST00000558919 MS4A4AQ96JQ5 239 aa10.18□□□□□ -0.78
VPS13C-207ENST00000558919 POTEB2H3BUK9 544 aa10.17□□□□□ -0.78
VPS13C-207ENST00000558919 L3MBTL3Q96JM7 780 aaPredicted RBP10.16□□□□□ -0.78
VPS13C-207ENST00000558919 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.16□□□□□ -0.78
VPS13C-207ENST00000558919 DPY19L2Q6NUT2 758 aa10.15□□□□□ -0.78
VPS13C-207ENST00000558919 GTPBP6O43824 516 aaPredicted RBP10.13□□□□□ -0.79
VPS13C-207ENST00000558919 POTEJP0CG39 1038 aa10.11□□□□□ -0.79
VPS13C-207ENST00000558919 BOLA1Q9Y3E2 137 aa10.11□□□□□ -0.79
VPS13C-207ENST00000558919 G3V3G9 751 aa10.1□□□□□ -0.79
VPS13C-207ENST00000558919 MAMSTRQ6ZN01 415 aa10.1□□□□□ -0.79
VPS13C-207ENST00000558919 SPRYD3Q8NCJ5 442 aa10.08□□□□□ -0.8
VPS13C-207ENST00000558919 TMEM121BQ9BXQ6 578 aaPredicted RBP10.08□□□□□ -0.8
VPS13C-207ENST00000558919 PPP1R37O75864 691 aa10.07□□□□□ -0.8
VPS13C-207ENST00000558919 MICALL2Q8IY33 904 aa10.06□□□□□ -0.8
VPS13C-207ENST00000558919 SCUBE2Q9NQ36 999 aa10.06□□□□□ -0.8
VPS13C-207ENST00000558919 PAXIP1Q6ZW49 1069 aaPredicted RBP10.04□□□□□ -0.8
VPS13C-207ENST00000558919 C3orf67Q6ZVT6 689 aa10.03□□□□□ -0.8
VPS13C-207ENST00000558919 CFAP44Q96MT7 982 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms