RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 TMC1Q8TDI8 760 aa18.6■□□□□ 0.57
SPG11-210ENST00000558319 WDR43Q15061 677 aaKnown RBP eCLIP18.58■□□□□ 0.57
SPG11-210ENST00000558319 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.58■□□□□ 0.56
SPG11-210ENST00000558319 MIER1Q8N108 512 aa18.57■□□□□ 0.56
SPG11-210ENST00000558319 NCBP3Q53F19 620 aaKnown RBP18.57■□□□□ 0.56
SPG11-210ENST00000558319 PPM1GO15355 546 aaPredicted RBP18.56■□□□□ 0.56
SPG11-210ENST00000558319 KCNH8Q96L42 1107 aa18.56■□□□□ 0.56
SPG11-210ENST00000558319 NCLP19338 710 aaKnown RBP18.56■□□□□ 0.56
SPG11-210ENST00000558319 DNTTIP2Q5QJE6 756 aaKnown RBP18.54■□□□□ 0.56
SPG11-210ENST00000558319 HAP1P54257 671 aaPredicted RBP18.53■□□□□ 0.56
SPG11-210ENST00000558319 LAS1LQ9Y4W2 734 aaKnown RBP18.5■□□□□ 0.55
SPG11-210ENST00000558319 CSRNP3Q8WYN3 585 aa18.5■□□□□ 0.55
SPG11-210ENST00000558319 PTMAP06454 111 aaKnown RBP18.5■□□□□ 0.55
SPG11-210ENST00000558319 CDK11BP21127 795 aaKnown RBP18.5■□□□□ 0.55
SPG11-210ENST00000558319 RGL3Q3MIN7 710 aa18.49■□□□□ 0.55
SPG11-210ENST00000558319 LMOD2Q6P5Q4 547 aa18.49■□□□□ 0.55
SPG11-210ENST00000558319 MRS2Q9HD23 443 aa18.48■□□□□ 0.55
SPG11-210ENST00000558319 DDRGK1Q96HY6 314 aa18.47■□□□□ 0.55
SPG11-210ENST00000558319 ARID4BQ4LE39 1312 aaPredicted RBP18.47■□□□□ 0.55
SPG11-210ENST00000558319 RRP7BPQ9NSQ0 103 aa18.46■□□□□ 0.55
SPG11-210ENST00000558319 PPP1R15AO75807 674 aaPredicted RBP18.46■□□□□ 0.54
SPG11-210ENST00000558319 BECN1Q14457 450 aa18.44■□□□□ 0.54
SPG11-210ENST00000558319 NEUROD2Q15784 382 aa18.43■□□□□ 0.54
SPG11-210ENST00000558319 MYH16Q9H6N6 1097 aa18.4■□□□□ 0.54
SPG11-210ENST00000558319 ERICH6BQ5W0A0 696 aa18.39■□□□□ 0.53
SPG11-210ENST00000558319 GOLGA6L22H0YM25 854 aa18.36■□□□□ 0.53
SPG11-210ENST00000558319 NPHP1O15259 732 aa18.36■□□□□ 0.53
SPG11-210ENST00000558319 SOX12O15370 315 aa18.35■□□□□ 0.53
SPG11-210ENST00000558319 PLCB2Q00722 1185 aa18.34■□□□□ 0.53
SPG11-210ENST00000558319 SUPT16HQ9Y5B9 1047 aaKnown RBP18.31■□□□□ 0.52
SPG11-210ENST00000558319 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.3■□□□□ 0.52
SPG11-210ENST00000558319 SCRIBQ14160 1630 aa18.3■□□□□ 0.52
SPG11-210ENST00000558319 CHMP7Q8WUX9 453 aaPredicted RBP18.29■□□□□ 0.52
SPG11-210ENST00000558319 TSPY4P0CV99 314 aa18.28■□□□□ 0.52
SPG11-210ENST00000558319 TSPY10P0CW01 314 aa18.28■□□□□ 0.52
SPG11-210ENST00000558319 NOP58Q9Y2X3 529 aaKnown RBP18.28■□□□□ 0.52
SPG11-210ENST00000558319 NAP1L2Q9ULW6 460 aaPredicted RBP18.27■□□□□ 0.52
SPG11-210ENST00000558319 DEKP35659 375 aaKnown RBP18.27■□□□□ 0.52
SPG11-210ENST00000558319 ARID3AQ99856 593 aa18.26■□□□□ 0.51
SPG11-210ENST00000558319 ZRSR1Q15695 479 aaKnown RBP18.24■□□□□ 0.51
SPG11-210ENST00000558319 CLSTN1O94985 981 aa18.2■□□□□ 0.5
SPG11-210ENST00000558319 MLECQ14165 292 aa18.2■□□□□ 0.5
SPG11-210ENST00000558319 SPRYD3Q8NCJ5 442 aa18.2■□□□□ 0.5
SPG11-210ENST00000558319 FRAT1Q92837 279 aaPredicted RBP18.19■□□□□ 0.5
SPG11-210ENST00000558319 CC2D1BQ5T0F9 858 aaKnown RBP18.18■□□□□ 0.5
SPG11-210ENST00000558319 RGS3P49796 1198 aa18.18■□□□□ 0.5
SPG11-210ENST00000558319 MTUS2Q5JR59 1369 aa18.17■□□□□ 0.5
SPG11-210ENST00000558319 SAFB2Q14151 953 aaKnown RBP eCLIP18.16■□□□□ 0.5
SPG11-210ENST00000558319 FTSJ3Q8IY81 847 aaKnown RBP18.16■□□□□ 0.5
SPG11-210ENST00000558319 ISY1Q9ULR0 285 aaKnown RBP18.14■□□□□ 0.49
SPG11-210ENST00000558319 TRHP20396 242 aaPredicted RBP18.13■□□□□ 0.49
SPG11-210ENST00000558319 OS9Q13438 667 aaPredicted RBP18.12■□□□□ 0.49
SPG11-210ENST00000558319 B4GALNT3Q6L9W6 998 aa18.11■□□□□ 0.49
SPG11-210ENST00000558319 ANO8Q9HCE9 1232 aaPredicted RBP18.1■□□□□ 0.49
SPG11-210ENST00000558319 U2SURPO15042 1029 aaKnown RBP18.1■□□□□ 0.49
SPG11-210ENST00000558319 HSP90AB1P08238 724 aaKnown RBP18.1■□□□□ 0.49
SPG11-210ENST00000558319 MSNP26038 577 aaKnown RBP18.08■□□□□ 0.49
SPG11-210ENST00000558319 EIF4G2P78344 907 aaKnown RBP eCLIP18.08■□□□□ 0.49
SPG11-210ENST00000558319 CASC1Q6TDU7 716 aa18.07■□□□□ 0.48
SPG11-210ENST00000558319 APBB1O00213 710 aa18.06■□□□□ 0.48
SPG11-210ENST00000558319 DCAF1Q9Y4B6 1507 aa18.06■□□□□ 0.48
SPG11-210ENST00000558319 POGKQ9P215 609 aa18.06■□□□□ 0.48
SPG11-210ENST00000558319 ZNF330Q9Y3S2 320 aaPredicted RBP18.04■□□□□ 0.48
SPG11-210ENST00000558319 PPP4R2Q9NY27 417 aa18.04■□□□□ 0.48
SPG11-210ENST00000558319 FGD1P98174 961 aa18.04■□□□□ 0.48
SPG11-210ENST00000558319 KNSTRNQ9Y448 316 aa18.04■□□□□ 0.48
SPG11-210ENST00000558319 GOLGA2Q08379 1002 aa18.02■□□□□ 0.48
SPG11-210ENST00000558319 CHAF1AQ13111 956 aaPredicted RBP18.02■□□□□ 0.48
SPG11-210ENST00000558319 CARD11Q9BXL7 1154 aa18.01■□□□□ 0.47
SPG11-210ENST00000558319 GOLGA6L6A8MZA4 724 aa18■□□□□ 0.47
SPG11-210ENST00000558319 KCNJ4P48050 445 aa18■□□□□ 0.47
SPG11-210ENST00000558319 PDE4CQ08493 712 aa18■□□□□ 0.47
SPG11-210ENST00000558319 SIN3AQ96ST3 1273 aa18■□□□□ 0.47
SPG11-210ENST00000558319 MAPK8IP3Q9UPT6 1336 aa17.99■□□□□ 0.47
SPG11-210ENST00000558319 CFAP53Q96M91 514 aa17.99■□□□□ 0.47
SPG11-210ENST00000558319 DRC7Q8IY82 874 aa17.98■□□□□ 0.47
SPG11-210ENST00000558319 RBM19Q9Y4C8 960 aaKnown RBP17.98■□□□□ 0.47
SPG11-210ENST00000558319 L1TD1Q5T7N2 865 aaKnown RBP17.96■□□□□ 0.47
SPG11-210ENST00000558319 GZF1Q9H116 711 aaPredicted RBP17.96■□□□□ 0.47
SPG11-210ENST00000558319 STK26Q9P289 416 aa17.95■□□□□ 0.46
SPG11-210ENST00000558319 PLEKHD1A6NEE1 506 aa17.94■□□□□ 0.46
SPG11-210ENST00000558319 PAK3O75914 559 aaPredicted RBP17.91■□□□□ 0.46
SPG11-210ENST00000558319 HSCBQ8IWL3 235 aa17.91■□□□□ 0.46
SPG11-210ENST00000558319 TNNT3P45378 269 aaPredicted RBP17.9■□□□□ 0.46
SPG11-210ENST00000558319 ZCCHC6Q5VYS8 1495 aaKnown RBP17.9■□□□□ 0.46
SPG11-210ENST00000558319 CFDP1Q9UEE9 299 aaPredicted RBP17.89■□□□□ 0.45
SPG11-210ENST00000558319 GOLGA6L4A6NEF3 574 aa17.87■□□□□ 0.45
SPG11-210ENST00000558319 NRDCO43847 1150 aa17.87■□□□□ 0.45
SPG11-210ENST00000558319 SRPK2P78362 688 aaKnown RBP17.86■□□□□ 0.45
SPG11-210ENST00000558319 NUTM2DQ5VT03 806 aaPredicted RBP17.85■□□□□ 0.45
SPG11-210ENST00000558319 CCDC9Q9Y3X0 531 aaKnown RBP17.84■□□□□ 0.45
SPG11-210ENST00000558319 FOXD1Q16676 465 aa17.83■□□□□ 0.45
SPG11-210ENST00000558319 PNNQ9H307 717 aaKnown RBP17.83■□□□□ 0.45
SPG11-210ENST00000558319 CLIP1P30622 1438 aa17.81■□□□□ 0.44
SPG11-210ENST00000558319 DCAF11Q8TEB1 546 aa17.8■□□□□ 0.44
SPG11-210ENST00000558319 PRM3Q9NNZ6 103 aa17.8■□□□□ 0.44
SPG11-210ENST00000558319 SLKQ9H2G2 1235 aaPredicted RBP17.8■□□□□ 0.44
SPG11-210ENST00000558319 NUDCQ9Y266 331 aa17.79■□□□□ 0.44
SPG11-210ENST00000558319 NUTM2FA1L443 756 aa17.77■□□□□ 0.43
SPG11-210ENST00000558319 CSB-PGBD3P0DP91 1061 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms