RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MS4A3Q96HJ5 214 aa9.96□□□□□ -0.82
VPS13C-205ENST00000558088 CCDC61Q9Y6R9 512 aa9.95□□□□□ -0.82
VPS13C-205ENST00000558088 RASEFQ8IZ41 740 aa9.92□□□□□ -0.82
VPS13C-205ENST00000558088 KIF12Q96FN5 646 aa9.89□□□□□ -0.83
VPS13C-205ENST00000558088 FAM212AQ96EL1 285 aa9.88□□□□□ -0.83
VPS13C-205ENST00000558088 ASTLQ6HA08 431 aaPredicted RBP9.87□□□□□ -0.83
VPS13C-205ENST00000558088 PLSCR2Q9NRY7 297 aa9.87□□□□□ -0.83
VPS13C-205ENST00000558088 SLC39A7Q92504 469 aa9.85□□□□□ -0.83
VPS13C-205ENST00000558088 MAP3K13O43283 966 aa9.84□□□□□ -0.83
VPS13C-205ENST00000558088 ATMINO43313 823 aaPredicted RBP9.84□□□□□ -0.83
VPS13C-205ENST00000558088 NUBP1P53384 320 aa9.84□□□□□ -0.83
VPS13C-205ENST00000558088 C7P10643 843 aa9.83□□□□□ -0.84
VPS13C-205ENST00000558088 METRNQ9UJH8 293 aa9.82□□□□□ -0.84
VPS13C-205ENST00000558088 PELP1Q8IZL8 1130 aaKnown RBP9.81□□□□□ -0.84
VPS13C-205ENST00000558088 KLHL34Q8N239 644 aa9.8□□□□□ -0.84
VPS13C-205ENST00000558088 SGIP1Q9BQI5 828 aa9.8□□□□□ -0.84
VPS13C-205ENST00000558088 PCDHB13Q9Y5F0 798 aa9.8□□□□□ -0.84
VPS13C-205ENST00000558088 TIE1P35590 1138 aa9.79□□□□□ -0.84
VPS13C-205ENST00000558088 VASPP50552 380 aaPredicted RBP9.78□□□□□ -0.84
VPS13C-205ENST00000558088 ATN1P54259 1190 aaPredicted RBP9.77□□□□□ -0.85
VPS13C-205ENST00000558088 DCAF8Q5TAQ9 597 aa9.77□□□□□ -0.85
VPS13C-205ENST00000558088 BMP2KQ9NSY1 1161 aaPredicted RBP9.77□□□□□ -0.85
VPS13C-205ENST00000558088 MAMSTRQ6ZN01 415 aa9.73□□□□□ -0.85
VPS13C-205ENST00000558088 TRPC6Q9Y210 931 aa9.73□□□□□ -0.85
VPS13C-205ENST00000558088 POTEB2H3BUK9 544 aa9.72□□□□□ -0.85
VPS13C-205ENST00000558088 TTLL13PA6NNM8 815 aa9.71□□□□□ -0.86
VPS13C-205ENST00000558088 OTUD5Q96G74 571 aa9.71□□□□□ -0.86
VPS13C-205ENST00000558088 SEC24BO95487 1268 aa9.7□□□□□ -0.86
VPS13C-205ENST00000558088 IFNL1Q8IU54 200 aa9.7□□□□□ -0.86
VPS13C-205ENST00000558088 GSE1Q14687 1217 aa9.69□□□□□ -0.86
VPS13C-205ENST00000558088 PYGBP11216 843 aa9.68□□□□□ -0.86
VPS13C-205ENST00000558088 SCUBE2Q9NQ36 999 aa9.68□□□□□ -0.86
VPS13C-205ENST00000558088 TMEM106CQ9BVX2 250 aa9.67□□□□□ -0.86
VPS13C-205ENST00000558088 TRIM35Q9UPQ4 493 aa9.67□□□□□ -0.86
VPS13C-205ENST00000558088 IER5LQ5T953 404 aa9.66□□□□□ -0.86
VPS13C-205ENST00000558088 SPOCK2Q92563 424 aa9.61□□□□□ -0.87
VPS13C-205ENST00000558088 ZNF467Q7Z7K2 595 aaPredicted RBP9.6□□□□□ -0.87
VPS13C-205ENST00000558088 PCDHB8Q9UN66 801 aa9.59□□□□□ -0.87
VPS13C-205ENST00000558088 POTEJP0CG39 1038 aa9.58□□□□□ -0.88
VPS13C-205ENST00000558088 PLCG2P16885 1265 aa9.58□□□□□ -0.88
VPS13C-205ENST00000558088 COLQQ9Y215 455 aaPredicted RBP9.58□□□□□ -0.88
VPS13C-205ENST00000558088 POTEFA5A3E0 1075 aa9.57□□□□□ -0.88
VPS13C-205ENST00000558088 CIZ1Q9ULV3 898 aaPredicted RBP9.56□□□□□ -0.88
VPS13C-205ENST00000558088 CHRM1P11229 460 aaPredicted RBP9.55□□□□□ -0.88
VPS13C-205ENST00000558088 IFNLR1Q8IU57 520 aaPredicted RBP9.55□□□□□ -0.88
VPS13C-205ENST00000558088 GOLGA2Q08379 1002 aa9.54□□□□□ -0.88
VPS13C-205ENST00000558088 OCEL1Q9H607 264 aa9.5□□□□□ -0.89
VPS13C-205ENST00000558088 IRX5P78411 483 aaPredicted RBP9.49□□□□□ -0.89
VPS13C-205ENST00000558088 MKRN3Q13064 507 aaKnown RBP9.49□□□□□ -0.89
VPS13C-205ENST00000558088 POTEMA6NI47 508 aa9.47□□□□□ -0.89
VPS13C-205ENST00000558088 PSEN1P49768 467 aa9.47□□□□□ -0.89
VPS13C-205ENST00000558088 PDAP1Q13442 181 aaKnown RBP9.46□□□□□ -0.9
VPS13C-205ENST00000558088 POTEGQ6S5H5 508 aa9.46□□□□□ -0.9
VPS13C-205ENST00000558088 TRIM41Q8WV44 630 aa9.46□□□□□ -0.9
VPS13C-205ENST00000558088 FAM163AQ96GL9 167 aaPredicted RBP9.46□□□□□ -0.9
VPS13C-205ENST00000558088 SLAIN1Q8ND83 568 aa9.44□□□□□ -0.9
VPS13C-205ENST00000558088 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.4□□□□□ -0.94e-9■■■■■ 28.8
VPS13C-205ENST00000558088 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.4□□□□□ -0.9
VPS13C-205ENST00000558088 L3MBTL3Q96JM7 780 aaPredicted RBP9.39□□□□□ -0.91
VPS13C-205ENST00000558088 C3orf67Q6ZVT6 689 aa9.38□□□□□ -0.91
VPS13C-205ENST00000558088 PCDH10Q9P2E7 1040 aa9.37□□□□□ -0.91
VPS13C-205ENST00000558088 CABP2Q9NPB3 220 aa9.36□□□□□ -0.91
VPS13C-205ENST00000558088 G3V3G9 751 aa9.35□□□□□ -0.91
VPS13C-205ENST00000558088 PDCD7Q8N8D1 485 aaKnown RBP9.35□□□□□ -0.91
VPS13C-205ENST00000558088 SNPHO15079 494 aa9.34□□□□□ -0.91
VPS13C-205ENST00000558088 LCE2DQ5TA82 110 aaPredicted RBP9.32□□□□□ -0.92
VPS13C-205ENST00000558088 RIOK3O14730 519 aaKnown RBP9.29□□□□□ -0.92
VPS13C-205ENST00000558088 ST18O60284 1047 aa9.27□□□□□ -0.93
VPS13C-205ENST00000558088 TAOK2Q9UL54 1235 aa9.26□□□□□ -0.93
VPS13C-205ENST00000558088 VGFO15240 615 aaPredicted RBP9.25□□□□□ -0.93
VPS13C-205ENST00000558088 ILDR1Q86SU0 546 aaPredicted RBP9.25□□□□□ -0.93
VPS13C-205ENST00000558088 TMEM121BQ9BXQ6 578 aaPredicted RBP9.25□□□□□ -0.93
VPS13C-205ENST00000558088 BOLA1Q9Y3E2 137 aa9.24□□□□□ -0.93
VPS13C-205ENST00000558088 EFCAB3Q8N7B9 438 aa9.23□□□□□ -0.93
VPS13C-205ENST00000558088 DPY19L2Q6NUT2 758 aa9.22□□□□□ -0.93
VPS13C-205ENST00000558088 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.2□□□□□ -0.94
VPS13C-205ENST00000558088 ZFP91Q96JP5 570 aaPredicted RBP9.2□□□□□ -0.94
VPS13C-205ENST00000558088 CDAN1Q8IWY9 1227 aa9.19□□□□□ -0.94
VPS13C-205ENST00000558088 RNF25Q96BH1 459 aaPredicted RBP9.19□□□□□ -0.94
VPS13C-205ENST00000558088 SOX12O15370 315 aa9.18□□□□□ -0.94
VPS13C-205ENST00000558088 ECM2O94769 699 aaPredicted RBP9.15□□□□□ -0.94
VPS13C-205ENST00000558088 MARVELD3Q96A59 401 aa9.14□□□□□ -0.95
VPS13C-205ENST00000558088 EMP3P54852 163 aa9.13□□□□□ -0.95
VPS13C-205ENST00000558088 BCL11BQ9C0K0 894 aaPredicted RBP9.12□□□□□ -0.95
VPS13C-205ENST00000558088 ZNF710Q8N1W2 664 aa9.11□□□□□ -0.95
VPS13C-205ENST00000558088 STK24Q9Y6E0 443 aa9.11□□□□□ -0.95
VPS13C-205ENST00000558088 STK25O00506 426 aa9.1□□□□□ -0.95
VPS13C-205ENST00000558088 NLRP6P59044 892 aa9.1□□□□□ -0.95
VPS13C-205ENST00000558088 MICALL2Q8IY33 904 aa9.1□□□□□ -0.95
VPS13C-205ENST00000558088 PHF8Q9UPP1 1060 aa9.1□□□□□ -0.95
VPS13C-205ENST00000558088 RIMBP2O15034 1052 aa9.09□□□□□ -0.95
VPS13C-205ENST00000558088 DOK7Q18PE1 504 aa9.09□□□□□ -0.95
VPS13C-205ENST00000558088 MS4A4AQ96JQ5 239 aa9.06□□□□□ -0.96
VPS13C-205ENST00000558088 FAM205CA6NFA0 338 aa9.03□□□□□ -0.96
VPS13C-205ENST00000558088 HOXB3P14651 431 aaPredicted RBP9.03□□□□□ -0.96
VPS13C-205ENST00000558088 PKD2Q13563 968 aa9.03□□□□□ -0.96
VPS13C-205ENST00000558088 RGL2O15211 777 aa9.02□□□□□ -0.97
VPS13C-205ENST00000558088 HS3ST6Q96QI5 342 aa9.01□□□□□ -0.97
VPS13C-205ENST00000558088 HOXB1P14653 301 aaPredicted RBP9□□□□□ -0.97
VPS13C-205ENST00000558088 FBXO22Q8NEZ5 403 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms