RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 ZBTB47Q9UFB7 747 aaPredicted RBP14.31□□□□□ -0.12
VRK1-207ENST00000557352 MS4A3Q96HJ5 214 aa14.3□□□□□ -0.12
VRK1-207ENST00000557352 NUBP1P53384 320 aa14.29□□□□□ -0.12
VRK1-207ENST00000557352 VASPP50552 380 aaPredicted RBP14.28□□□□□ -0.12
VRK1-207ENST00000557352 LHX8Q68G74 356 aa14.28□□□□□ -0.12
VRK1-207ENST00000557352 KIF12Q96FN5 646 aa14.27□□□□□ -0.13
VRK1-207ENST00000557352 MAP3K13O43283 966 aa14.19□□□□□ -0.14
VRK1-207ENST00000557352 PELP1Q8IZL8 1130 aaKnown RBP14.19□□□□□ -0.14
VRK1-207ENST00000557352 ASTLQ6HA08 431 aaPredicted RBP14.17□□□□□ -0.14
VRK1-207ENST00000557352 ATMINO43313 823 aaPredicted RBP14.15□□□□□ -0.14
VRK1-207ENST00000557352 KLHL34Q8N239 644 aa14.13□□□□□ -0.15
VRK1-207ENST00000557352 FAM212AQ96EL1 285 aa14.13□□□□□ -0.15
VRK1-207ENST00000557352 TRPC6Q9Y210 931 aa14.13□□□□□ -0.15
VRK1-207ENST00000557352 IFNLR1Q8IU57 520 aaPredicted RBP14.07□□□□□ -0.16
VRK1-207ENST00000557352 ATN1P54259 1190 aaPredicted RBP14.06□□□□□ -0.16
VRK1-207ENST00000557352 SGIP1Q9BQI5 828 aa14.06□□□□□ -0.16
VRK1-207ENST00000557352 BMP2KQ9NSY1 1161 aaPredicted RBP14.06□□□□□ -0.16
VRK1-207ENST00000557352 POTEB2H3BUK9 544 aa14.05□□□□□ -0.16
VRK1-207ENST00000557352 PCDHB13Q9Y5F0 798 aa14.05□□□□□ -0.16
VRK1-207ENST00000557352 DCAF8Q5TAQ9 597 aa14.04□□□□□ -0.16
VRK1-207ENST00000557352 TIE1P35590 1138 aa14.02□□□□□ -0.17
VRK1-207ENST00000557352 C7P10643 843 aa14.01□□□□□ -0.17
VRK1-207ENST00000557352 SLC39A7Q92504 469 aa14.01□□□□□ -0.17
VRK1-207ENST00000557352 METRNQ9UJH8 293 aa14.01□□□□□ -0.17
VRK1-207ENST00000557352 IFNL1Q8IU54 200 aa14□□□□□ -0.17
VRK1-207ENST00000557352 TTLL13PA6NNM8 815 aa13.97□□□□□ -0.17
VRK1-207ENST00000557352 PYGBP11216 843 aa13.97□□□□□ -0.17
VRK1-207ENST00000557352 SPOCK2Q92563 424 aa13.95□□□□□ -0.18
VRK1-207ENST00000557352 OTUD5Q96G74 571 aa13.93□□□□□ -0.18
VRK1-207ENST00000557352 GSE1Q14687 1217 aa13.91□□□□□ -0.18
VRK1-207ENST00000557352 POTEFA5A3E0 1075 aa13.9□□□□□ -0.18
VRK1-207ENST00000557352 POTEJP0CG39 1038 aa13.9□□□□□ -0.18
VRK1-207ENST00000557352 TRIM35Q9UPQ4 493 aa13.87□□□□□ -0.19
VRK1-207ENST00000557352 PCDHB8Q9UN66 801 aa13.86□□□□□ -0.19
VRK1-207ENST00000557352 TMEM106CQ9BVX2 250 aa13.85□□□□□ -0.19
VRK1-207ENST00000557352 CHRM1P11229 460 aaPredicted RBP13.83□□□□□ -0.2
VRK1-207ENST00000557352 COLQQ9Y215 455 aaPredicted RBP13.82□□□□□ -0.2
VRK1-207ENST00000557352 CIZ1Q9ULV3 898 aaPredicted RBP13.81□□□□□ -0.2
VRK1-207ENST00000557352 IER5LQ5T953 404 aa13.79□□□□□ -0.2
VRK1-207ENST00000557352 SEC24BO95487 1268 aa13.75□□□□□ -0.21
VRK1-207ENST00000557352 ZNF467Q7Z7K2 595 aaPredicted RBP13.74□□□□□ -0.21
VRK1-207ENST00000557352 MAMSTRQ6ZN01 415 aa13.73□□□□□ -0.21
VRK1-207ENST00000557352 IRX5P78411 483 aaPredicted RBP13.68□□□□□ -0.22
VRK1-207ENST00000557352 SCUBE2Q9NQ36 999 aa13.66□□□□□ -0.22
VRK1-207ENST00000557352 PSEN1P49768 467 aa13.64□□□□□ -0.23
VRK1-207ENST00000557352 PLCG2P16885 1265 aa13.63□□□□□ -0.23
VRK1-207ENST00000557352 TRIM41Q8WV44 630 aa13.63□□□□□ -0.23
VRK1-207ENST00000557352 PDAP1Q13442 181 aaKnown RBP13.6□□□□□ -0.23
VRK1-207ENST00000557352 OCEL1Q9H607 264 aa13.6□□□□□ -0.23
VRK1-207ENST00000557352 PDCD7Q8N8D1 485 aaKnown RBP13.53□□□□□ -0.24
VRK1-207ENST00000557352 GOLGA2Q08379 1002 aa13.52□□□□□ -0.25
VRK1-207ENST00000557352 MKRN3Q13064 507 aaKnown RBP13.52□□□□□ -0.25
VRK1-207ENST00000557352 LCE2DQ5TA82 110 aaPredicted RBP13.48□□□□□ -0.25
VRK1-207ENST00000557352 RNF25Q96BH1 459 aaPredicted RBP13.48□□□□□ -0.25
VRK1-207ENST00000557352 CABP2Q9NPB3 220 aa13.47□□□□□ -0.25
VRK1-207ENST00000557352 ILDR1Q86SU0 546 aaPredicted RBP13.46□□□□□ -0.25
VRK1-207ENST00000557352 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.46□□□□□ -0.25
VRK1-207ENST00000557352 SLAIN1Q8ND83 568 aa13.45□□□□□ -0.26
VRK1-207ENST00000557352 RIOK3O14730 519 aaKnown RBP13.44□□□□□ -0.26
VRK1-207ENST00000557352 PKD2Q13563 968 aa13.44□□□□□ -0.26
VRK1-207ENST00000557352 FAM163AQ96GL9 167 aaPredicted RBP13.43□□□□□ -0.26
VRK1-207ENST00000557352 POTEMA6NI47 508 aa13.42□□□□□ -0.26
VRK1-207ENST00000557352 ECM2O94769 699 aaPredicted RBP13.41□□□□□ -0.26
VRK1-207ENST00000557352 POTEGQ6S5H5 508 aa13.41□□□□□ -0.26
VRK1-207ENST00000557352 DPY19L2Q6NUT2 758 aa13.38□□□□□ -0.27
VRK1-207ENST00000557352 VGFO15240 615 aaPredicted RBP13.37□□□□□ -0.27
VRK1-207ENST00000557352 L3MBTL3Q96JM7 780 aaPredicted RBP13.37□□□□□ -0.27
VRK1-207ENST00000557352 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.37□□□□□ -0.27
VRK1-207ENST00000557352 EFCAB3Q8N7B9 438 aa13.36□□□□□ -0.27
VRK1-207ENST00000557352 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.34□□□□□ -0.27
VRK1-207ENST00000557352 ZFP91Q96JP5 570 aaPredicted RBP13.34□□□□□ -0.27
VRK1-207ENST00000557352 RGL2O15211 777 aa13.31□□□□□ -0.28
VRK1-207ENST00000557352 C3orf67Q6ZVT6 689 aa13.29□□□□□ -0.28
VRK1-207ENST00000557352 TAOK2Q9UL54 1235 aa13.29□□□□□ -0.28
VRK1-207ENST00000557352 ST18O60284 1047 aa13.26□□□□□ -0.29
VRK1-207ENST00000557352 BOLA1Q9Y3E2 137 aa13.26□□□□□ -0.29
VRK1-207ENST00000557352 SOX12O15370 315 aa13.22□□□□□ -0.29
VRK1-207ENST00000557352 BCL11BQ9C0K0 894 aaPredicted RBP13.22□□□□□ -0.29
VRK1-207ENST00000557352 TMEM121BQ9BXQ6 578 aaPredicted RBP13.21□□□□□ -0.29
VRK1-207ENST00000557352 SNPHO15079 494 aa13.19□□□□□ -0.3
VRK1-207ENST00000557352 MS4A4AQ96JQ5 239 aa13.19□□□□□ -0.3
VRK1-207ENST00000557352 STK24Q9Y6E0 443 aa13.19□□□□□ -0.3
VRK1-207ENST00000557352 STK25O00506 426 aa13.18□□□□□ -0.3
VRK1-207ENST00000557352 PCDH10Q9P2E7 1040 aa13.18□□□□□ -0.3
VRK1-207ENST00000557352 PHF8Q9UPP1 1060 aa13.18□□□□□ -0.3
VRK1-207ENST00000557352 G3V3G9 751 aa13.17□□□□□ -0.3
VRK1-207ENST00000557352 PLSCR2Q9NRY7 297 aa13.15□□□□□ -0.3
VRK1-207ENST00000557352 MICALL2Q8IY33 904 aa13.11□□□□□ -0.31
VRK1-207ENST00000557352 FBXO22Q8NEZ5 403 aa13.1□□□□□ -0.31
VRK1-207ENST00000557352 NLRP6P59044 892 aa13.08□□□□□ -0.32
VRK1-207ENST00000557352 MFRPQ9BY79 579 aa13.07□□□□□ -0.32
VRK1-207ENST00000557352 TMEM92Q6UXU6 159 aa13.06□□□□□ -0.32
VRK1-207ENST00000557352 CDAN1Q8IWY9 1227 aa13.05□□□□□ -0.32
VRK1-207ENST00000557352 MARVELD3Q96A59 401 aa13.05□□□□□ -0.32
VRK1-207ENST00000557352 HOXB3P14651 431 aaPredicted RBP13.04□□□□□ -0.32
VRK1-207ENST00000557352 HS6ST3Q8IZP7 471 aa13.02□□□□□ -0.33
VRK1-207ENST00000557352 CHGAP10645 457 aaKnown RBP12.99□□□□□ -0.33
VRK1-207ENST00000557352 EMP3P54852 163 aa12.95□□□□□ -0.34
VRK1-207ENST00000557352 DOK7Q18PE1 504 aa12.93□□□□□ -0.34
VRK1-207ENST00000557352 POTEB3A0JP26 581 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms