RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 SPNS2Q8IVW8 549 aa9.01□□□□□ -0.97
SLIRP-208ENST00000556956 CREBZFQ9NS37 354 aa8.99□□□□□ -0.97
SLIRP-208ENST00000556956 POTEFA5A3E0 1075 aa8.95□□□□□ -0.98
SLIRP-208ENST00000556956 ATXN8OSP0DMR3 200 aa8.95□□□□□ -0.98
SLIRP-208ENST00000556956 MS4A3Q96HJ5 214 aa8.95□□□□□ -0.98
SLIRP-208ENST00000556956 PAK3O75914 559 aaPredicted RBP8.91□□□□□ -0.98
SLIRP-208ENST00000556956 ZBTB22O15209 634 aa8.89□□□□□ -0.99
SLIRP-208ENST00000556956 ST18O60284 1047 aa8.89□□□□□ -0.99
SLIRP-208ENST00000556956 ATN1P54259 1190 aaPredicted RBP8.89□□□□□ -0.99
SLIRP-208ENST00000556956 SLC4A1APQ9BWU0 796 aaKnown RBP8.85□□□□□ -0.99
SLIRP-208ENST00000556956 COLQQ9Y215 455 aaPredicted RBP8.78□□□□□ -1
SLIRP-208ENST00000556956 MNX1P50219 401 aaPredicted RBP8.73□□□□□ -1.01
SLIRP-208ENST00000556956 BMP2KQ9NSY1 1161 aaPredicted RBP8.73□□□□□ -1.01
SLIRP-208ENST00000556956 TRPC6Q9Y210 931 aa8.73□□□□□ -1.01
SLIRP-208ENST00000556956 SLAIN1Q8ND83 568 aa8.72□□□□□ -1.01
SLIRP-208ENST00000556956 NPM1P06748 294 aaKnown RBP eCLIP8.68□□□□□ -1.02
SLIRP-208ENST00000556956 MARVELD3Q96A59 401 aa8.68□□□□□ -1.02
SLIRP-208ENST00000556956 SEC24BO95487 1268 aa8.66□□□□□ -1.02
SLIRP-208ENST00000556956 TMEM121BQ9BXQ6 578 aaPredicted RBP8.63□□□□□ -1.03
SLIRP-208ENST00000556956 STAG3Q9UJ98 1225 aa8.63□□□□□ -1.03
SLIRP-208ENST00000556956 KRTAP3-3Q9BYR6 98 aa8.62□□□□□ -1.03
SLIRP-208ENST00000556956 KRTAP3-2Q9BYR7 98 aa8.62□□□□□ -1.03
SLIRP-208ENST00000556956 KIF12Q96FN5 646 aa8.61□□□□□ -1.03
SLIRP-208ENST00000556956 TSPYL2Q9H2G4 693 aaPredicted RBP8.6□□□□□ -1.03
SLIRP-208ENST00000556956 CCDC61Q9Y6R9 512 aa8.6□□□□□ -1.03
SLIRP-208ENST00000556956 TIE1P35590 1138 aa8.58□□□□□ -1.04
SLIRP-208ENST00000556956 POTEB3A0JP26 581 aa8.56□□□□□ -1.04
SLIRP-208ENST00000556956 TTLL13PA6NNM8 815 aa8.56□□□□□ -1.04
SLIRP-208ENST00000556956 POTEBQ6S5H4 581 aa8.56□□□□□ -1.04
SLIRP-208ENST00000556956 MAP3K13O43283 966 aa8.52□□□□□ -1.05
SLIRP-208ENST00000556956 TRIM35Q9UPQ4 493 aa8.51□□□□□ -1.05
SLIRP-208ENST00000556956 IER5LQ5T953 404 aa8.5□□□□□ -1.05
SLIRP-208ENST00000556956 EMP3P54852 163 aa8.47□□□□□ -1.05
SLIRP-208ENST00000556956 HS3ST6Q96QI5 342 aa8.47□□□□□ -1.05
SLIRP-208ENST00000556956 SNPHO15079 494 aa8.45□□□□□ -1.06
SLIRP-208ENST00000556956 FAM205CA6NFA0 338 aa8.43□□□□□ -1.06
SLIRP-208ENST00000556956 PLCG2P16885 1265 aa8.39□□□□□ -1.07
SLIRP-208ENST00000556956 RNF166Q96A37 237 aaPredicted RBP8.39□□□□□ -1.07
SLIRP-208ENST00000556956 IRX5P78411 483 aaPredicted RBP8.36□□□□□ -1.07
SLIRP-208ENST00000556956 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.34□□□□□ -1.07
SLIRP-208ENST00000556956 RASEFQ8IZ41 740 aa8.29□□□□□ -1.08
SLIRP-208ENST00000556956 TMEM106CQ9BVX2 250 aa8.27□□□□□ -1.09
SLIRP-208ENST00000556956 PCDHB13Q9Y5F0 798 aa8.27□□□□□ -1.09
SLIRP-208ENST00000556956 SPDYE4A6NLX3 237 aa8.26□□□□□ -1.09
SLIRP-208ENST00000556956 MYT1LQ9UL68 1186 aa8.26□□□□□ -1.09
SLIRP-208ENST00000556956 OCEL1Q9H607 264 aa8.25□□□□□ -1.09
SLIRP-208ENST00000556956 IFNL1Q8IU54 200 aa8.23□□□□□ -1.09
SLIRP-208ENST00000556956 SGIP1Q9BQI5 828 aa8.23□□□□□ -1.09
SLIRP-208ENST00000556956 C3orf67Q6ZVT6 689 aa8.14□□□□□ -1.11
SLIRP-208ENST00000556956 ERBB3P21860 1342 aa8.1□□□□□ -1.11
SLIRP-208ENST00000556956 PDCD7Q8N8D1 485 aaKnown RBP8.1□□□□□ -1.11
SLIRP-208ENST00000556956 HOXB3P14651 431 aaPredicted RBP8.09□□□□□ -1.11
SLIRP-208ENST00000556956 HOXB1P14653 301 aaPredicted RBP8.07□□□□□ -1.12
SLIRP-208ENST00000556956 PLA2G2EQ9NZK7 142 aa8.06□□□□□ -1.12
SLIRP-208ENST00000556956 VARS2Q5ST30 1063 aaKnown RBP8.05□□□□□ -1.12
SLIRP-208ENST00000556956 L3MBTL3Q96JM7 780 aaPredicted RBP8.01□□□□□ -1.13
SLIRP-208ENST00000556956 PTGER2P43116 358 aa8□□□□□ -1.13
SLIRP-208ENST00000556956 MIER1Q8N108 512 aa7.98□□□□□ -1.13
SLIRP-208ENST00000556956 ZNF710Q8N1W2 664 aa7.98□□□□□ -1.13
SLIRP-208ENST00000556956 NUBP1P53384 320 aa7.97□□□□□ -1.13
SLIRP-208ENST00000556956 ZNF687Q8N1G0 1237 aa7.97□□□□□ -1.13
SLIRP-208ENST00000556956 ANKRD13DQ6ZTN6 518 aa7.95□□□□□ -1.14
SLIRP-208ENST00000556956 PLEKHG5O94827 1062 aa7.94□□□□□ -1.14
SLIRP-208ENST00000556956 PROM2Q8N271 834 aa7.93□□□□□ -1.14
SLIRP-208ENST00000556956 PCDHB8Q9UN66 801 aa7.93□□□□□ -1.14
SLIRP-208ENST00000556956 DOK7Q18PE1 504 aa7.9□□□□□ -1.14
SLIRP-208ENST00000556956 DPY19L2Q6NUT2 758 aa7.89□□□□□ -1.15
SLIRP-208ENST00000556956 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.89□□□□□ -1.15
SLIRP-208ENST00000556956 MKRN3Q13064 507 aaKnown RBP7.86□□□□□ -1.15
SLIRP-208ENST00000556956 FAM212AQ96EL1 285 aa7.86□□□□□ -1.15
SLIRP-208ENST00000556956 PYGBP11216 843 aa7.85□□□□□ -1.15
SLIRP-208ENST00000556956 IRX2Q9BZI1 471 aaPredicted RBP7.84□□□□□ -1.15
SLIRP-208ENST00000556956 LSM11P83369 360 aaKnown RBP eCLIP7.83□□□□□ -1.16
SLIRP-208ENST00000556956 HCSTQ9UBK5 93 aa7.83□□□□□ -1.16
SLIRP-208ENST00000556956 GOLGA2Q08379 1002 aa7.81□□□□□ -1.16
SLIRP-208ENST00000556956 ILDR1Q86SU0 546 aaPredicted RBP7.81□□□□□ -1.16
SLIRP-208ENST00000556956 RIMBP2O15034 1052 aa7.8□□□□□ -1.16
SLIRP-208ENST00000556956 GPR153Q6NV75 609 aa7.79□□□□□ -1.16
SLIRP-208ENST00000556956 PLCD3Q8N3E9 789 aa7.79□□□□□ -1.16
SLIRP-208ENST00000556956 BOLA1Q9Y3E2 137 aa7.79□□□□□ -1.16
SLIRP-208ENST00000556956 ZSWIM6Q9HCJ5 1215 aa7.74□□□□□ -1.17
SLIRP-208ENST00000556956 G3V3G9 751 aa7.72□□□□□ -1.17
SLIRP-208ENST00000556956 DCAF8Q5TAQ9 597 aa7.72□□□□□ -1.17
SLIRP-208ENST00000556956 POTEEQ6S8J3 1075 aa7.72□□□□□ -1.17
SLIRP-208ENST00000556956 ZBTB47Q9UFB7 747 aaPredicted RBP7.71□□□□□ -1.18
SLIRP-208ENST00000556956 RGS20O76081 388 aa7.69□□□□□ -1.18
SLIRP-208ENST00000556956 ARSIQ5FYB1 569 aa7.69□□□□□ -1.18
SLIRP-208ENST00000556956 ZNF316A6NFI3 1004 aaPredicted RBP7.68□□□□□ -1.18
SLIRP-208ENST00000556956 TMEM92Q6UXU6 159 aa7.68□□□□□ -1.18
SLIRP-208ENST00000556956 KHSRPQ92945 711 aaKnown RBP eCLIP7.68□□□□□ -1.18
SLIRP-208ENST00000556956 AXIN2Q9Y2T1 843 aa7.67□□□□□ -1.18
SLIRP-208ENST00000556956 PSEN1P49768 467 aa7.65□□□□□ -1.18
SLIRP-208ENST00000556956 Q6ZNB5 142 aa7.64□□□□□ -1.19
SLIRP-208ENST00000556956 ZNF467Q7Z7K2 595 aaPredicted RBP7.63□□□□□ -1.19
SLIRP-208ENST00000556956 PBX2P40425 430 aa7.6□□□□□ -1.19
SLIRP-208ENST00000556956 CSRNP3Q8WYN3 585 aa7.6□□□□□ -1.19
SLIRP-208ENST00000556956 ADGRD1Q6QNK2 874 aa7.59□□□□□ -1.19
SLIRP-208ENST00000556956 CABP2Q9NPB3 220 aa7.58□□□□□ -1.2
SLIRP-208ENST00000556956 A0A0G2JS52 829 aa7.57□□□□□ -1.2
SLIRP-208ENST00000556956 LCE2BO14633 110 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms