RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 RASEFQ8IZ41 740 aa14.23□□□□□ -0.13
PRPF39-210ENST00000556718 PLEKHG5O94827 1062 aa14.22□□□□□ -0.13
PRPF39-210ENST00000556718 ASTLQ6HA08 431 aaPredicted RBP14.19□□□□□ -0.14
PRPF39-210ENST00000556718 PLCD3Q8N3E9 789 aa14.19□□□□□ -0.14
PRPF39-210ENST00000556718 KIF12Q96FN5 646 aa14.19□□□□□ -0.14
PRPF39-210ENST00000556718 ATMINO43313 823 aaPredicted RBP14.18□□□□□ -0.14
PRPF39-210ENST00000556718 OTUD5Q96G74 571 aa14.14□□□□□ -0.15
PRPF39-210ENST00000556718 TRPC6Q9Y210 931 aa14.14□□□□□ -0.15
PRPF39-210ENST00000556718 MAP3K13O43283 966 aa14.12□□□□□ -0.15
PRPF39-210ENST00000556718 METRNQ9UJH8 293 aa14.1□□□□□ -0.15
PRPF39-210ENST00000556718 ATN1P54259 1190 aaPredicted RBP14.09□□□□□ -0.15
PRPF39-210ENST00000556718 NUBP1P53384 320 aa14.08□□□□□ -0.16
PRPF39-210ENST00000556718 SLC39A7Q92504 469 aa14.06□□□□□ -0.16
PRPF39-210ENST00000556718 BMP2KQ9NSY1 1161 aaPredicted RBP14.06□□□□□ -0.16
PRPF39-210ENST00000556718 C7P10643 843 aa14.04□□□□□ -0.16
PRPF39-210ENST00000556718 POTEJP0CG39 1038 aa14.03□□□□□ -0.16
PRPF39-210ENST00000556718 ZBTB47Q9UFB7 747 aaPredicted RBP14.01□□□□□ -0.17
PRPF39-210ENST00000556718 TIE1P35590 1138 aa13.97□□□□□ -0.17
PRPF39-210ENST00000556718 POTEFA5A3E0 1075 aa13.95□□□□□ -0.18
PRPF39-210ENST00000556718 PCDHB13Q9Y5F0 798 aa13.94□□□□□ -0.18
PRPF39-210ENST00000556718 TTLL13PA6NNM8 815 aa13.93□□□□□ -0.18
PRPF39-210ENST00000556718 FAM212AQ96EL1 285 aa13.92□□□□□ -0.18
PRPF39-210ENST00000556718 IFNL1Q8IU54 200 aa13.9□□□□□ -0.18
PRPF39-210ENST00000556718 SGIP1Q9BQI5 828 aa13.89□□□□□ -0.19
PRPF39-210ENST00000556718 FBXO3Q9UK99 471 aa13.88□□□□□ -0.19
PRPF39-210ENST00000556718 COLQQ9Y215 455 aaPredicted RBP13.86□□□□□ -0.19
PRPF39-210ENST00000556718 TRIM35Q9UPQ4 493 aa13.84□□□□□ -0.19
PRPF39-210ENST00000556718 DCAF8Q5TAQ9 597 aa13.83□□□□□ -0.2
PRPF39-210ENST00000556718 PYGBP11216 843 aa13.8□□□□□ -0.2
PRPF39-210ENST00000556718 VASPP50552 380 aaPredicted RBP13.8□□□□□ -0.2
PRPF39-210ENST00000556718 MAMSTRQ6ZN01 415 aa13.8□□□□□ -0.2
PRPF39-210ENST00000556718 TMEM106CQ9BVX2 250 aa13.78□□□□□ -0.2
PRPF39-210ENST00000556718 SEC24BO95487 1268 aa13.77□□□□□ -0.21
PRPF39-210ENST00000556718 SCUBE2Q9NQ36 999 aa13.77□□□□□ -0.21
PRPF39-210ENST00000556718 POTEMA6NI47 508 aa13.74□□□□□ -0.21
PRPF39-210ENST00000556718 KLHL34Q8N239 644 aa13.74□□□□□ -0.21
PRPF39-210ENST00000556718 IER5LQ5T953 404 aa13.73□□□□□ -0.21
PRPF39-210ENST00000556718 PCDHB8Q9UN66 801 aa13.71□□□□□ -0.21
PRPF39-210ENST00000556718 POTEGQ6S5H5 508 aa13.7□□□□□ -0.22
PRPF39-210ENST00000556718 LCE2DQ5TA82 110 aaPredicted RBP13.69□□□□□ -0.22
PRPF39-210ENST00000556718 PLSCR2Q9NRY7 297 aa13.67□□□□□ -0.22
PRPF39-210ENST00000556718 FAM163AQ96GL9 167 aaPredicted RBP13.65□□□□□ -0.22
PRPF39-210ENST00000556718 IRX5P78411 483 aaPredicted RBP13.63□□□□□ -0.23
PRPF39-210ENST00000556718 GSE1Q14687 1217 aa13.61□□□□□ -0.23
PRPF39-210ENST00000556718 PLCG2P16885 1265 aa13.6□□□□□ -0.23
PRPF39-210ENST00000556718 IFNLR1Q8IU57 520 aaPredicted RBP13.58□□□□□ -0.24
PRPF39-210ENST00000556718 CHRM1P11229 460 aaPredicted RBP13.53□□□□□ -0.24
PRPF39-210ENST00000556718 ZNF467Q7Z7K2 595 aaPredicted RBP13.53□□□□□ -0.24
PRPF39-210ENST00000556718 OCEL1Q9H607 264 aa13.53□□□□□ -0.24
PRPF39-210ENST00000556718 SLAIN1Q8ND83 568 aa13.52□□□□□ -0.25
PRPF39-210ENST00000556718 SPOCK2Q92563 424 aa13.5□□□□□ -0.25
PRPF39-210ENST00000556718 PSEN1P49768 467 aa13.46□□□□□ -0.25
PRPF39-210ENST00000556718 CIZ1Q9ULV3 898 aaPredicted RBP13.46□□□□□ -0.25
PRPF39-210ENST00000556718 PDCD7Q8N8D1 485 aaKnown RBP13.43□□□□□ -0.26
PRPF39-210ENST00000556718 PCDH10Q9P2E7 1040 aa13.42□□□□□ -0.26
PRPF39-210ENST00000556718 GOLGA2Q08379 1002 aa13.4□□□□□ -0.26
PRPF39-210ENST00000556718 MKRN3Q13064 507 aaKnown RBP13.4□□□□□ -0.26
PRPF39-210ENST00000556718 ST18O60284 1047 aa13.39□□□□□ -0.27
PRPF39-210ENST00000556718 PDAP1Q13442 181 aaKnown RBP13.37□□□□□ -0.27
PRPF39-210ENST00000556718 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.35□□□□□ -0.275e-7■■■■□ 19.3
PRPF39-210ENST00000556718 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.35□□□□□ -0.27
PRPF39-210ENST00000556718 CABP2Q9NPB3 220 aa13.3□□□□□ -0.28
PRPF39-210ENST00000556718 DPY19L2Q6NUT2 758 aa13.29□□□□□ -0.28
PRPF39-210ENST00000556718 ILDR1Q86SU0 546 aaPredicted RBP13.29□□□□□ -0.28
PRPF39-210ENST00000556718 CDAN1Q8IWY9 1227 aa13.29□□□□□ -0.28
PRPF39-210ENST00000556718 L3MBTL3Q96JM7 780 aaPredicted RBP13.27□□□□□ -0.29
PRPF39-210ENST00000556718 C3orf67Q6ZVT6 689 aa13.26□□□□□ -0.29
PRPF39-210ENST00000556718 SNPHO15079 494 aa13.21□□□□□ -0.29
PRPF39-210ENST00000556718 MARVELD3Q96A59 401 aa13.19□□□□□ -0.3
PRPF39-210ENST00000556718 TRIM41Q8WV44 630 aa13.18□□□□□ -0.3
PRPF39-210ENST00000556718 TMEM121BQ9BXQ6 578 aaPredicted RBP13.17□□□□□ -0.3
PRPF39-210ENST00000556718 EFCAB3Q8N7B9 438 aa13.15□□□□□ -0.3
PRPF39-210ENST00000556718 RNF25Q96BH1 459 aaPredicted RBP13.15□□□□□ -0.3
PRPF39-210ENST00000556718 BOLA1Q9Y3E2 137 aa13.14□□□□□ -0.31
PRPF39-210ENST00000556718 RIOK3O14730 519 aaKnown RBP13.09□□□□□ -0.31
PRPF39-210ENST00000556718 G3V3G9 751 aa13.08□□□□□ -0.32
PRPF39-210ENST00000556718 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.06□□□□□ -0.32
PRPF39-210ENST00000556718 ZFP91Q96JP5 570 aaPredicted RBP13.06□□□□□ -0.32
PRPF39-210ENST00000556718 EMP3P54852 163 aa13.04□□□□□ -0.32
PRPF39-210ENST00000556718 POTEB3A0JP26 581 aa13.03□□□□□ -0.32
PRPF39-210ENST00000556718 HOXB3P14651 431 aaPredicted RBP13.03□□□□□ -0.32
PRPF39-210ENST00000556718 POTEBQ6S5H4 581 aa13.03□□□□□ -0.32
PRPF39-210ENST00000556718 VGFO15240 615 aaPredicted RBP13.01□□□□□ -0.33
PRPF39-210ENST00000556718 MS4A4AQ96JQ5 239 aa13□□□□□ -0.33
PRPF39-210ENST00000556718 PHF8Q9UPP1 1060 aa12.99□□□□□ -0.33
PRPF39-210ENST00000556718 FAM205CA6NFA0 338 aa12.98□□□□□ -0.33
PRPF39-210ENST00000556718 HS3ST6Q96QI5 342 aa12.98□□□□□ -0.33
PRPF39-210ENST00000556718 TMEM92Q6UXU6 159 aa12.97□□□□□ -0.33
PRPF39-210ENST00000556718 SPNS2Q8IVW8 549 aa12.97□□□□□ -0.33
PRPF39-210ENST00000556718 MICALL2Q8IY33 904 aa12.97□□□□□ -0.33
PRPF39-210ENST00000556718 SOX12O15370 315 aa12.96□□□□□ -0.33
PRPF39-210ENST00000556718 MMRN1Q13201 1228 aa12.93□□□□□ -0.34
PRPF39-210ENST00000556718 KRTAP3-3Q9BYR6 98 aa12.91□□□□□ -0.34
PRPF39-210ENST00000556718 KRTAP3-2Q9BYR7 98 aa12.91□□□□□ -0.34
PRPF39-210ENST00000556718 BCL11BQ9C0K0 894 aaPredicted RBP12.9□□□□□ -0.34
PRPF39-210ENST00000556718 HOXB1P14653 301 aaPredicted RBP12.88□□□□□ -0.35
PRPF39-210ENST00000556718 DOK7Q18PE1 504 aa12.88□□□□□ -0.35
PRPF39-210ENST00000556718 ZNF710Q8N1W2 664 aa12.88□□□□□ -0.35
PRPF39-210ENST00000556718 FBXO22Q8NEZ5 403 aa12.85□□□□□ -0.35
PRPF39-210ENST00000556718 STK24Q9Y6E0 443 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms