RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 IFNLR1Q8IU57 520 aaPredicted RBP16.18■□□□□ 0.18
PRPF39-209ENST00000556353 CCDC61Q9Y6R9 512 aa16.17■□□□□ 0.18
PRPF39-209ENST00000556353 FAM212AQ96EL1 285 aa16.16■□□□□ 0.18
PRPF39-209ENST00000556353 GALR2O43603 387 aaPredicted RBP16.08■□□□□ 0.16
PRPF39-209ENST00000556353 DCAF8Q5TAQ9 597 aa16.08■□□□□ 0.16
PRPF39-209ENST00000556353 SPOCK2Q92563 424 aa16.07■□□□□ 0.16
PRPF39-209ENST00000556353 KIF12Q96FN5 646 aa16.04■□□□□ 0.16
PRPF39-209ENST00000556353 MS4A3Q96HJ5 214 aa16.01■□□□□ 0.15
PRPF39-209ENST00000556353 DCBLD2Q96PD2 775 aa16.01■□□□□ 0.15
PRPF39-209ENST00000556353 GSE1Q14687 1217 aa16■□□□□ 0.15
PRPF39-209ENST00000556353 MAP3K13O43283 966 aa15.97■□□□□ 0.15
PRPF39-209ENST00000556353 POTEIP0CG38 1075 aa15.92■□□□□ 0.14
PRPF39-209ENST00000556353 SGIP1Q9BQI5 828 aa15.91■□□□□ 0.14
PRPF39-209ENST00000556353 PYGBP11216 843 aa15.9■□□□□ 0.14
PRPF39-209ENST00000556353 CIZ1Q9ULV3 898 aaPredicted RBP15.9■□□□□ 0.14
PRPF39-209ENST00000556353 PCDHB13Q9Y5F0 798 aa15.9■□□□□ 0.14
PRPF39-209ENST00000556353 IFNL1Q8IU54 200 aa15.81■□□□□ 0.12
PRPF39-209ENST00000556353 TRPC6Q9Y210 931 aa15.79■□□□□ 0.12
PRPF39-209ENST00000556353 CHRM1P11229 460 aaPredicted RBP15.78■□□□□ 0.12
PRPF39-209ENST00000556353 ASTLQ6HA08 431 aaPredicted RBP15.78■□□□□ 0.12
PRPF39-209ENST00000556353 ATMINO43313 823 aaPredicted RBP15.77■□□□□ 0.12
PRPF39-209ENST00000556353 TIE1P35590 1138 aa15.77■□□□□ 0.12
PRPF39-209ENST00000556353 BMP2KQ9NSY1 1161 aaPredicted RBP15.74■□□□□ 0.11
PRPF39-209ENST00000556353 TRIM41Q8WV44 630 aa15.73■□□□□ 0.11
PRPF39-209ENST00000556353 ZNF467Q7Z7K2 595 aaPredicted RBP15.72■□□□□ 0.11
PRPF39-209ENST00000556353 PCDHB8Q9UN66 801 aa15.72■□□□□ 0.11
PRPF39-209ENST00000556353 ATN1P54259 1190 aaPredicted RBP15.7■□□□□ 0.1
PRPF39-209ENST00000556353 PELP1Q8IZL8 1130 aaKnown RBP15.7■□□□□ 0.1
PRPF39-209ENST00000556353 TTLL13PA6NNM8 815 aa15.69■□□□□ 0.1
PRPF39-209ENST00000556353 TMEM106CQ9BVX2 250 aa15.65■□□□□ 0.1
PRPF39-209ENST00000556353 SLC39A7Q92504 469 aa15.64■□□□□ 0.09
PRPF39-209ENST00000556353 C7P10643 843 aa15.61■□□□□ 0.09
PRPF39-209ENST00000556353 TRIM35Q9UPQ4 493 aa15.6■□□□□ 0.09
PRPF39-209ENST00000556353 LHX8Q68G74 356 aa15.59■□□□□ 0.09
PRPF39-209ENST00000556353 METRNQ9UJH8 293 aa15.59■□□□□ 0.09
PRPF39-209ENST00000556353 PSEN1P49768 467 aa15.54■□□□□ 0.08
PRPF39-209ENST00000556353 PDAP1Q13442 181 aaKnown RBP15.54■□□□□ 0.08
PRPF39-209ENST00000556353 IER5LQ5T953 404 aa15.5■□□□□ 0.07
PRPF39-209ENST00000556353 ECM2O94769 699 aaPredicted RBP15.48■□□□□ 0.07
PRPF39-209ENST00000556353 PKD2Q13563 968 aa15.48■□□□□ 0.07
PRPF39-209ENST00000556353 RIOK3O14730 519 aaKnown RBP15.47■□□□□ 0.07
PRPF39-209ENST00000556353 SEC24BO95487 1268 aa15.46■□□□□ 0.07
PRPF39-209ENST00000556353 RNF25Q96BH1 459 aaPredicted RBP15.46■□□□□ 0.07
PRPF39-209ENST00000556353 GOLGA2Q08379 1002 aa15.45■□□□□ 0.06
PRPF39-209ENST00000556353 POTEB2H3BUK9 544 aa15.41■□□□□ 0.06
PRPF39-209ENST00000556353 POTEFA5A3E0 1075 aa15.4■□□□□ 0.06
PRPF39-209ENST00000556353 VGFO15240 615 aaPredicted RBP15.39■□□□□ 0.05
PRPF39-209ENST00000556353 COLQQ9Y215 455 aaPredicted RBP15.39■□□□□ 0.05
PRPF39-209ENST00000556353 MKRN3Q13064 507 aaKnown RBP15.38■□□□□ 0.05
PRPF39-209ENST00000556353 TAOK2Q9UL54 1235 aa15.37■□□□□ 0.05
PRPF39-209ENST00000556353 PLCG2P16885 1265 aa15.36■□□□□ 0.05
PRPF39-209ENST00000556353 CABP2Q9NPB3 220 aa15.36■□□□□ 0.05
PRPF39-209ENST00000556353 IRX5P78411 483 aaPredicted RBP15.35■□□□□ 0.05
PRPF39-209ENST00000556353 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.33■□□□□ 0.04
PRPF39-209ENST00000556353 ZFP91Q96JP5 570 aaPredicted RBP15.33■□□□□ 0.04
PRPF39-209ENST00000556353 RGL2O15211 777 aa15.32■□□□□ 0.04
PRPF39-209ENST00000556353 OCEL1Q9H607 264 aa15.32■□□□□ 0.04
PRPF39-209ENST00000556353 POTEJP0CG39 1038 aa15.28■□□□□ 0.04
PRPF39-209ENST00000556353 MAMSTRQ6ZN01 415 aa15.28■□□□□ 0.04
PRPF39-209ENST00000556353 OTUD5Q96G74 571 aa15.26■□□□□ 0.03
PRPF39-209ENST00000556353 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.26■□□□□ 0.031e-6■■□□□ 12.2
PRPF39-209ENST00000556353 EFCAB3Q8N7B9 438 aa15.22■□□□□ 0.03
PRPF39-209ENST00000556353 BCL11BQ9C0K0 894 aaPredicted RBP15.22■□□□□ 0.03
PRPF39-209ENST00000556353 SCUBE2Q9NQ36 999 aa15.22■□□□□ 0.03
PRPF39-209ENST00000556353 STK25O00506 426 aa15.2■□□□□ 0.02
PRPF39-209ENST00000556353 PDCD7Q8N8D1 485 aaKnown RBP15.2■□□□□ 0.02
PRPF39-209ENST00000556353 STK24Q9Y6E0 443 aa15.19■□□□□ 0.02
PRPF39-209ENST00000556353 ILDR1Q86SU0 546 aaPredicted RBP15.17■□□□□ 0.02
PRPF39-209ENST00000556353 SOX12O15370 315 aa15.13■□□□□ 0.01
PRPF39-209ENST00000556353 L3MBTL3Q96JM7 780 aaPredicted RBP15.12■□□□□ 0.01
PRPF39-209ENST00000556353 DPY19L2Q6NUT2 758 aa15.07■□□□□ 0
PRPF39-209ENST00000556353 PHF8Q9UPP1 1060 aa15.05■□□□□ -0
PRPF39-209ENST00000556353 G3V3G9 751 aa15.04■□□□□ -0
PRPF39-209ENST00000556353 NLRP6P59044 892 aa15.02■□□□□ -0
PRPF39-209ENST00000556353 C3orf67Q6ZVT6 689 aa15.02■□□□□ -0
PRPF39-209ENST00000556353 HS6ST3Q8IZP7 471 aa15.02■□□□□ -0
PRPF39-209ENST00000556353 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.02■□□□□ -0
PRPF39-209ENST00000556353 CHGAP10645 457 aaKnown RBP15□□□□□ -0.01
PRPF39-209ENST00000556353 AMER1Q5JTC6 1135 aaPredicted RBP15□□□□□ -0.01
PRPF39-209ENST00000556353 SLAIN1Q8ND83 568 aa15□□□□□ -0.01
PRPF39-209ENST00000556353 BOLA1Q9Y3E2 137 aa15□□□□□ -0.01
PRPF39-209ENST00000556353 MS4A4AQ96JQ5 239 aa14.98□□□□□ -0.01
PRPF39-209ENST00000556353 MFRPQ9BY79 579 aa14.97□□□□□ -0.01
PRPF39-209ENST00000556353 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
PRPF39-209ENST00000556353 FBXO22Q8NEZ5 403 aa14.95□□□□□ -0.02
PRPF39-209ENST00000556353 TMEM121BQ9BXQ6 578 aaPredicted RBP14.9□□□□□ -0.02
PRPF39-209ENST00000556353 RTN4Q9NQC3 1192 aaKnown RBP14.9□□□□□ -0.02
PRPF39-209ENST00000556353 MICALL2Q8IY33 904 aa14.89□□□□□ -0.03
PRPF39-209ENST00000556353 DNAJC5Q9H3Z4 198 aa14.85□□□□□ -0.03
PRPF39-209ENST00000556353 FAM163AQ96GL9 167 aaPredicted RBP14.81□□□□□ -0.04
PRPF39-209ENST00000556353 SNPHO15079 494 aa14.78□□□□□ -0.04
PRPF39-209ENST00000556353 NKX1-1Q15270 411 aaPredicted RBP14.78□□□□□ -0.04
PRPF39-209ENST00000556353 RYDENQ9NUL5 291 aaKnown RBP14.75□□□□□ -0.05
PRPF39-209ENST00000556353 PPP1R37O75864 691 aa14.73□□□□□ -0.05
PRPF39-209ENST00000556353 TMEM92Q6UXU6 159 aa14.7□□□□□ -0.06
PRPF39-209ENST00000556353 LCE2DQ5TA82 110 aaPredicted RBP14.69□□□□□ -0.06
PRPF39-209ENST00000556353 ST18O60284 1047 aa14.65□□□□□ -0.06
PRPF39-209ENST00000556353 POTEMA6NI47 508 aa14.64□□□□□ -0.07
PRPF39-209ENST00000556353 GTPBP6O43824 516 aaPredicted RBP14.62□□□□□ -0.07
PRPF39-209ENST00000556353 POTEGQ6S5H5 508 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms