RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 ASTLQ6HA08 431 aaPredicted RBP14.6□□□□□ -0.07
LINC00643-203ENST00000555518 PLCD3Q8N3E9 789 aa14.58□□□□□ -0.08
LINC00643-203ENST00000555518 SLC39A7Q92504 469 aa14.56□□□□□ -0.08
LINC00643-203ENST00000555518 C7P10643 843 aa14.55□□□□□ -0.08
LINC00643-203ENST00000555518 ATMINO43313 823 aaPredicted RBP14.53□□□□□ -0.08
LINC00643-203ENST00000555518 KIF12Q96FN5 646 aa14.53□□□□□ -0.08
LINC00643-203ENST00000555518 PELP1Q8IZL8 1130 aaKnown RBP14.5□□□□□ -0.09
LINC00643-203ENST00000555518 METRNQ9UJH8 293 aa14.49□□□□□ -0.09
LINC00643-203ENST00000555518 FKBP8Q14318 412 aa14.47□□□□□ -0.09
LINC00643-203ENST00000555518 RASEFQ8IZ41 740 aa14.47□□□□□ -0.09
LINC00643-203ENST00000555518 OTUD5Q96G74 571 aa14.47□□□□□ -0.09
LINC00643-203ENST00000555518 POTEB2H3BUK9 544 aa14.44□□□□□ -0.1
LINC00643-203ENST00000555518 MAMSTRQ6ZN01 415 aa14.43□□□□□ -0.1
LINC00643-203ENST00000555518 SGIP1Q9BQI5 828 aa14.43□□□□□ -0.1
LINC00643-203ENST00000555518 TIE1P35590 1138 aa14.42□□□□□ -0.1
LINC00643-203ENST00000555518 MAP3K13O43283 966 aa14.41□□□□□ -0.1
LINC00643-203ENST00000555518 ATN1P54259 1190 aaPredicted RBP14.39□□□□□ -0.11
LINC00643-203ENST00000555518 FBXO3Q9UK99 471 aa14.39□□□□□ -0.11
LINC00643-203ENST00000555518 FAM212AQ96EL1 285 aa14.36□□□□□ -0.11
LINC00643-203ENST00000555518 BMP2KQ9NSY1 1161 aaPredicted RBP14.36□□□□□ -0.11
LINC00643-203ENST00000555518 NUBP1P53384 320 aa14.35□□□□□ -0.11
LINC00643-203ENST00000555518 PCDHB13Q9Y5F0 798 aa14.31□□□□□ -0.12
LINC00643-203ENST00000555518 SCUBE2Q9NQ36 999 aa14.3□□□□□ -0.12
LINC00643-203ENST00000555518 TTLL13PA6NNM8 815 aa14.27□□□□□ -0.13
LINC00643-203ENST00000555518 TRPC6Q9Y210 931 aa14.26□□□□□ -0.13
LINC00643-203ENST00000555518 IER5LQ5T953 404 aa14.25□□□□□ -0.13
LINC00643-203ENST00000555518 SEC24BO95487 1268 aa14.23□□□□□ -0.13
LINC00643-203ENST00000555518 POTEJP0CG39 1038 aa14.21□□□□□ -0.13
LINC00643-203ENST00000555518 TRIM35Q9UPQ4 493 aa14.18□□□□□ -0.14
LINC00643-203ENST00000555518 IFNL1Q8IU54 200 aa14.17□□□□□ -0.14
LINC00643-203ENST00000555518 DCAF8Q5TAQ9 597 aa14.16□□□□□ -0.14
LINC00643-203ENST00000555518 POTEFA5A3E0 1075 aa14.15□□□□□ -0.14
LINC00643-203ENST00000555518 POTEMA6NI47 508 aa14.14□□□□□ -0.15
LINC00643-203ENST00000555518 TMEM106CQ9BVX2 250 aa14.12□□□□□ -0.15
LINC00643-203ENST00000555518 PCDH10Q9P2E7 1040 aa14.11□□□□□ -0.15
LINC00643-203ENST00000555518 POTEGQ6S5H5 508 aa14.1□□□□□ -0.15
LINC00643-203ENST00000555518 COLQQ9Y215 455 aaPredicted RBP14.09□□□□□ -0.15
LINC00643-203ENST00000555518 VASPP50552 380 aaPredicted RBP14.08□□□□□ -0.16
LINC00643-203ENST00000555518 GSE1Q14687 1217 aa14.08□□□□□ -0.16
LINC00643-203ENST00000555518 KLHL34Q8N239 644 aa14.08□□□□□ -0.16
LINC00643-203ENST00000555518 PLSCR2Q9NRY7 297 aa14.07□□□□□ -0.16
LINC00643-203ENST00000555518 PYGBP11216 843 aa14.04□□□□□ -0.16
LINC00643-203ENST00000555518 PLCG2P16885 1265 aa14.04□□□□□ -0.16
LINC00643-203ENST00000555518 FAM163AQ96GL9 167 aaPredicted RBP14□□□□□ -0.17
LINC00643-203ENST00000555518 ZNF467Q7Z7K2 595 aaPredicted RBP13.99□□□□□ -0.17
LINC00643-203ENST00000555518 IRX5P78411 483 aaPredicted RBP13.96□□□□□ -0.17
LINC00643-203ENST00000555518 OCEL1Q9H607 264 aa13.96□□□□□ -0.17
LINC00643-203ENST00000555518 CHRM1P11229 460 aaPredicted RBP13.95□□□□□ -0.18
LINC00643-203ENST00000555518 PCDHB8Q9UN66 801 aa13.93□□□□□ -0.18
LINC00643-203ENST00000555518 LCE2DQ5TA82 110 aaPredicted RBP13.9□□□□□ -0.18
LINC00643-203ENST00000555518 SLAIN1Q8ND83 568 aa13.9□□□□□ -0.18
LINC00643-203ENST00000555518 GOLGA2Q08379 1002 aa13.88□□□□□ -0.19
LINC00643-203ENST00000555518 SPOCK2Q92563 424 aa13.85□□□□□ -0.19
LINC00643-203ENST00000555518 MKRN3Q13064 507 aaKnown RBP13.83□□□□□ -0.2
LINC00643-203ENST00000555518 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.81□□□□□ -0.2
LINC00643-203ENST00000555518 SNPHO15079 494 aa13.79□□□□□ -0.2
LINC00643-203ENST00000555518 PSEN1P49768 467 aa13.78□□□□□ -0.2
LINC00643-203ENST00000555518 L3MBTL3Q96JM7 780 aaPredicted RBP13.78□□□□□ -0.2
LINC00643-203ENST00000555518 PDAP1Q13442 181 aaKnown RBP13.76□□□□□ -0.21
LINC00643-203ENST00000555518 IFNLR1Q8IU57 520 aaPredicted RBP13.76□□□□□ -0.21
LINC00643-203ENST00000555518 CIZ1Q9ULV3 898 aaPredicted RBP13.74□□□□□ -0.21
LINC00643-203ENST00000555518 TMEM121BQ9BXQ6 578 aaPredicted RBP13.73□□□□□ -0.21
LINC00643-203ENST00000555518 ST18O60284 1047 aa13.72□□□□□ -0.21
LINC00643-203ENST00000555518 PDCD7Q8N8D1 485 aaKnown RBP13.72□□□□□ -0.21
LINC00643-203ENST00000555518 TRIM41Q8WV44 630 aa13.72□□□□□ -0.21
LINC00643-203ENST00000555518 C3orf67Q6ZVT6 689 aa13.71□□□□□ -0.21
LINC00643-203ENST00000555518 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.71□□□□□ -0.21
LINC00643-203ENST00000555518 CDAN1Q8IWY9 1227 aa13.67□□□□□ -0.22
LINC00643-203ENST00000555518 ILDR1Q86SU0 546 aaPredicted RBP13.64□□□□□ -0.23
LINC00643-203ENST00000555518 G3V3G9 751 aa13.6□□□□□ -0.23
LINC00643-203ENST00000555518 CABP2Q9NPB3 220 aa13.59□□□□□ -0.23
LINC00643-203ENST00000555518 BOLA1Q9Y3E2 137 aa13.52□□□□□ -0.25
LINC00643-203ENST00000555518 DPY19L2Q6NUT2 758 aa13.45□□□□□ -0.26
LINC00643-203ENST00000555518 EMP3P54852 163 aa13.44□□□□□ -0.26
LINC00643-203ENST00000555518 MARVELD3Q96A59 401 aa13.44□□□□□ -0.26
LINC00643-203ENST00000555518 RIOK3O14730 519 aaKnown RBP13.42□□□□□ -0.26
LINC00643-203ENST00000555518 EFCAB3Q8N7B9 438 aa13.4□□□□□ -0.26
LINC00643-203ENST00000555518 VGFO15240 615 aaPredicted RBP13.39□□□□□ -0.27
LINC00643-203ENST00000555518 SOX12O15370 315 aa13.39□□□□□ -0.27
LINC00643-203ENST00000555518 TAOK2Q9UL54 1235 aa13.39□□□□□ -0.27
LINC00643-203ENST00000555518 DOK7Q18PE1 504 aa13.35□□□□□ -0.27
LINC00643-203ENST00000555518 ZNF710Q8N1W2 664 aa13.34□□□□□ -0.27
LINC00643-203ENST00000555518 RIMBP2O15034 1052 aa13.33□□□□□ -0.28
LINC00643-203ENST00000555518 SPNS2Q8IVW8 549 aa13.33□□□□□ -0.28
LINC00643-203ENST00000555518 HS3ST6Q96QI5 342 aa13.31□□□□□ -0.28
LINC00643-203ENST00000555518 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.3□□□□□ -0.28
LINC00643-203ENST00000555518 FAM205CA6NFA0 338 aa13.3□□□□□ -0.28
LINC00643-203ENST00000555518 MMRN1Q13201 1228 aa13.3□□□□□ -0.28
LINC00643-203ENST00000555518 ZFP91Q96JP5 570 aaPredicted RBP13.3□□□□□ -0.28
LINC00643-203ENST00000555518 HOXB3P14651 431 aaPredicted RBP13.29□□□□□ -0.28
LINC00643-203ENST00000555518 RNF25Q96BH1 459 aaPredicted RBP13.29□□□□□ -0.28
LINC00643-203ENST00000555518 HOXB1P14653 301 aaPredicted RBP13.27□□□□□ -0.29
LINC00643-203ENST00000555518 MICALL2Q8IY33 904 aa13.27□□□□□ -0.29
LINC00643-203ENST00000555518 ZSWIM6Q9HCJ5 1215 aa13.24□□□□□ -0.29
LINC00643-203ENST00000555518 NLRP6P59044 892 aa13.21□□□□□ -0.29
LINC00643-203ENST00000555518 PHF8Q9UPP1 1060 aa13.19□□□□□ -0.3
LINC00643-203ENST00000555518 ERBB3P21860 1342 aa13.18□□□□□ -0.3
LINC00643-203ENST00000555518 POTEB3A0JP26 581 aa13.18□□□□□ -0.3
LINC00643-203ENST00000555518 POTEBQ6S5H4 581 aa13.18□□□□□ -0.3
LINC00643-203ENST00000555518 MS4A4AQ96JQ5 239 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms