RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 ISY1Q9ULR0 285 aaKnown RBP9.12□□□□□ -0.95
SYNE2-216ENST00000555002 TONSLQ96HA7 1378 aa9.11□□□□□ -0.95
SYNE2-216ENST00000555002 KDM2AQ9Y2K7 1162 aa9.11□□□□□ -0.95
SYNE2-216ENST00000555002 IRX6P78412 446 aaPredicted RBP9.11□□□□□ -0.95
SYNE2-216ENST00000555002 DNTTIP2Q5QJE6 756 aaKnown RBP9.11□□□□□ -0.95
SYNE2-216ENST00000555002 NAP1L2Q9ULW6 460 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-216ENST00000555002 AMER1Q5JTC6 1135 aaPredicted RBP9.1□□□□□ -0.95
SYNE2-216ENST00000555002 TMC1Q8TDI8 760 aa9.08□□□□□ -0.96
SYNE2-216ENST00000555002 LMOD2Q6P5Q4 547 aa9.07□□□□□ -0.96
SYNE2-216ENST00000555002 ARID4BQ4LE39 1312 aaPredicted RBP9.07□□□□□ -0.96
SYNE2-216ENST00000555002 GOLGA6L22H0YM25 854 aa9.07□□□□□ -0.96
SYNE2-216ENST00000555002 BECN1Q14457 450 aa9.06□□□□□ -0.96
SYNE2-216ENST00000555002 GOLGA2Q08379 1002 aa9.05□□□□□ -0.96
SYNE2-216ENST00000555002 CASC1Q6TDU7 716 aa9.05□□□□□ -0.96
SYNE2-216ENST00000555002 FGD1P98174 961 aa9.05□□□□□ -0.96
SYNE2-216ENST00000555002 PDE4CQ08493 712 aa9.05□□□□□ -0.96
SYNE2-216ENST00000555002 SENP3-EIF4A1A0A087X0R7 540 aa9.05□□□□□ -0.96
SYNE2-216ENST00000555002 PPM1GO15355 546 aaPredicted RBP9.05□□□□□ -0.96
SYNE2-216ENST00000555002 PLCB2Q00722 1185 aa9.04□□□□□ -0.96
SYNE2-216ENST00000555002 CHIC2Q9UKJ5 165 aa9.04□□□□□ -0.96
SYNE2-216ENST00000555002 LAS1LQ9Y4W2 734 aaKnown RBP9.04□□□□□ -0.96
SYNE2-216ENST00000555002 DDX10Q13206 875 aaKnown RBP9.04□□□□□ -0.96
SYNE2-216ENST00000555002 NAP1L5Q96NT1 182 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-216ENST00000555002 ABCC9O60706 1549 aa9.03□□□□□ -0.96
SYNE2-216ENST00000555002 OS9Q13438 667 aaPredicted RBP9.03□□□□□ -0.96
SYNE2-216ENST00000555002 ACIN1Q9UKV3 1341 aaKnown RBP9.03□□□□□ -0.96
SYNE2-216ENST00000555002 GOLGA6L6A8MZA4 724 aa9.03□□□□□ -0.96
SYNE2-216ENST00000555002 MRS2Q9HD23 443 aa9.01□□□□□ -0.97
SYNE2-216ENST00000555002 FTSJ3Q8IY81 847 aaKnown RBP9.01□□□□□ -0.97
SYNE2-216ENST00000555002 NOC3LQ8WTT2 800 aaKnown RBP9□□□□□ -0.97
SYNE2-216ENST00000555002 KCNJ4P48050 445 aa9□□□□□ -0.97
SYNE2-216ENST00000555002 ERICH6BQ5W0A0 696 aa9□□□□□ -0.97
SYNE2-216ENST00000555002 DDRGK1Q96HY6 314 aa8.99□□□□□ -0.97
SYNE2-216ENST00000555002 ANO8Q9HCE9 1232 aaPredicted RBP8.98□□□□□ -0.97
SYNE2-216ENST00000555002 FBXO3Q9UK99 471 aa8.97□□□□□ -0.97
SYNE2-216ENST00000555002 PNNQ9H307 717 aaKnown RBP8.96□□□□□ -0.97
SYNE2-216ENST00000555002 RTN4Q9NQC3 1192 aaKnown RBP8.95□□□□□ -0.98
SYNE2-216ENST00000555002 KIAA2012Q0VF49 1180 aa8.94□□□□□ -0.98
SYNE2-216ENST00000555002 NRDCO43847 1150 aa8.94□□□□□ -0.98
SYNE2-216ENST00000555002 GNL2Q13823 731 aaKnown RBP8.93□□□□□ -0.98
SYNE2-216ENST00000555002 DRC7Q8IY82 874 aa8.93□□□□□ -0.98
SYNE2-216ENST00000555002 HSP90AB1P08238 724 aaKnown RBP8.93□□□□□ -0.98
SYNE2-216ENST00000555002 HIRIP3Q9BW71 556 aaPredicted RBP8.93□□□□□ -0.98
SYNE2-216ENST00000555002 ANP32EQ9BTT0 268 aa8.92□□□□□ -0.98
SYNE2-216ENST00000555002 GOLGA6L4A6NEF3 574 aa8.92□□□□□ -0.98
SYNE2-216ENST00000555002 KRI1Q8N9T8 703 aaKnown RBP8.92□□□□□ -0.98
SYNE2-216ENST00000555002 CFAP53Q96M91 514 aa8.92□□□□□ -0.98
SYNE2-216ENST00000555002 NEUROD2Q15784 382 aa8.92□□□□□ -0.98
SYNE2-216ENST00000555002 KCNH8Q96L42 1107 aa8.92□□□□□ -0.98
SYNE2-216ENST00000555002 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.91□□□□□ -0.98
SYNE2-216ENST00000555002 ARID3AQ99856 593 aa8.91□□□□□ -0.98
SYNE2-216ENST00000555002 CHAF1AQ13111 956 aaPredicted RBP8.9□□□□□ -0.98
SYNE2-216ENST00000555002 SOX12O15370 315 aa8.89□□□□□ -0.99
SYNE2-216ENST00000555002 RGS3P49796 1198 aa8.89□□□□□ -0.99
SYNE2-216ENST00000555002 MAPK8IP3Q9UPT6 1336 aa8.88□□□□□ -0.99
SYNE2-216ENST00000555002 RGL3Q3MIN7 710 aa8.87□□□□□ -0.99
SYNE2-216ENST00000555002 TSPY4P0CV99 314 aa8.87□□□□□ -0.99
SYNE2-216ENST00000555002 TSPY10P0CW01 314 aa8.87□□□□□ -0.99
SYNE2-216ENST00000555002 ZNF330Q9Y3S2 320 aaPredicted RBP8.87□□□□□ -0.99
SYNE2-216ENST00000555002 L1TD1Q5T7N2 865 aaKnown RBP8.87□□□□□ -0.99
SYNE2-216ENST00000555002 SPRYD3Q8NCJ5 442 aa8.87□□□□□ -0.99
SYNE2-216ENST00000555002 POGKQ9P215 609 aa8.87□□□□□ -0.99
SYNE2-216ENST00000555002 A0A0U1RQG5 324 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-216ENST00000555002 FRAT1Q92837 279 aaPredicted RBP8.86□□□□□ -0.99
SYNE2-216ENST00000555002 RRP7BPQ9NSQ0 103 aa8.85□□□□□ -0.99
SYNE2-216ENST00000555002 VPS53Q5VIR6 699 aa8.84□□□□□ -0.99
SYNE2-216ENST00000555002 KNSTRNQ9Y448 316 aa8.84□□□□□ -0.99
SYNE2-216ENST00000555002 APBB1O00213 710 aa8.83□□□□□ -1
SYNE2-216ENST00000555002 U2SURPO15042 1029 aaKnown RBP8.83□□□□□ -1
SYNE2-216ENST00000555002 TMX4Q9H1E5 349 aaPredicted RBP8.82□□□□□ -1
SYNE2-216ENST00000555002 CHMP7Q8WUX9 453 aaPredicted RBP8.81□□□□□ -1
SYNE2-216ENST00000555002 EIF4G2P78344 907 aaKnown RBP eCLIP8.81□□□□□ -1
SYNE2-216ENST00000555002 CREBRFQ8IUR6 639 aa8.81□□□□□ -1
SYNE2-216ENST00000555002 HSCBQ8IWL3 235 aa8.81□□□□□ -1
SYNE2-216ENST00000555002 CNKSR2Q8WXI2 1034 aa8.81□□□□□ -1
SYNE2-216ENST00000555002 TRHP20396 242 aaPredicted RBP8.81□□□□□ -1
SYNE2-216ENST00000555002 WWC1Q8IX03 1113 aa8.8□□□□□ -1
SYNE2-216ENST00000555002 MTUS2Q5JR59 1369 aa8.8□□□□□ -1
SYNE2-216ENST00000555002 CCDC9Q9Y3X0 531 aaKnown RBP8.8□□□□□ -1
SYNE2-216ENST00000555002 MCCP23508 829 aa8.79□□□□□ -1
SYNE2-216ENST00000555002 G3V3G9 751 aa8.79□□□□□ -1
SYNE2-216ENST00000555002 DCAF8Q5TAQ9 597 aa8.79□□□□□ -1
SYNE2-216ENST00000555002 MSNP26038 577 aaKnown RBP8.78□□□□□ -1
SYNE2-216ENST00000555002 CSRNP3Q8WYN3 585 aa8.78□□□□□ -1
SYNE2-216ENST00000555002 RASSF8Q8NHQ8 419 aa8.78□□□□□ -1
SYNE2-216ENST00000555002 MLECQ14165 292 aa8.78□□□□□ -1
SYNE2-216ENST00000555002 CC2D1BQ5T0F9 858 aaKnown RBP8.78□□□□□ -1
SYNE2-216ENST00000555002 PATL2C9JE40 543 aaKnown RBP8.78□□□□□ -1
SYNE2-216ENST00000555002 HSP90B1P14625 803 aaKnown RBP8.77□□□□□ -1.01
SYNE2-216ENST00000555002 NUDCQ9Y266 331 aa8.77□□□□□ -1.01
SYNE2-216ENST00000555002 KIAA1211Q6ZU35 1233 aa8.77□□□□□ -1.01
SYNE2-216ENST00000555002 CHMP3Q9Y3E7 222 aa8.77□□□□□ -1.01
SYNE2-216ENST00000555002 CSB-PGBD3P0DP91 1061 aa8.77□□□□□ -1.01
SYNE2-216ENST00000555002 KAT6BQ8WYB5 2073 aa8.76□□□□□ -1.01
SYNE2-216ENST00000555002 SCRIBQ14160 1630 aa8.76□□□□□ -1.01
SYNE2-216ENST00000555002 SAFB2Q14151 953 aaKnown RBP eCLIP8.75□□□□□ -1.01
SYNE2-216ENST00000555002 PAK3O75914 559 aaPredicted RBP8.75□□□□□ -1.01
SYNE2-216ENST00000555002 TNNT3P45378 269 aaPredicted RBP8.74□□□□□ -1.01
SYNE2-216ENST00000555002 GOLGA6L1Q8N7Z2 621 aa8.74□□□□□ -1.01
SYNE2-216ENST00000555002 CDCA8Q53HL2 280 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms