RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 CIZ1Q9ULV3 898 aaPredicted RBP13.83□□□□□ -0.2
SCFD1-211ENST00000554437 PKD2Q13563 968 aa13.79□□□□□ -0.2
SCFD1-211ENST00000554437 DCAF8Q5TAQ9 597 aa13.79□□□□□ -0.2
SCFD1-211ENST00000554437 DCBLD2Q96PD2 775 aa13.79□□□□□ -0.2
SCFD1-211ENST00000554437 CLCN6P51797 869 aa13.77□□□□□ -0.21
SCFD1-211ENST00000554437 RASEFQ8IZ41 740 aa13.77□□□□□ -0.21
SCFD1-211ENST00000554437 FAM212AQ96EL1 285 aa13.77□□□□□ -0.21
SCFD1-211ENST00000554437 GSE1Q14687 1217 aa13.76□□□□□ -0.21
SCFD1-211ENST00000554437 ECM2O94769 699 aaPredicted RBP13.71□□□□□ -0.21
SCFD1-211ENST00000554437 OTUD5Q96G74 571 aa13.69□□□□□ -0.22
SCFD1-211ENST00000554437 TSPYL2Q9H2G4 693 aaPredicted RBP13.69□□□□□ -0.22
SCFD1-211ENST00000554437 TRIM41Q8WV44 630 aa13.65□□□□□ -0.22
SCFD1-211ENST00000554437 PAK3O75914 559 aaPredicted RBP13.64□□□□□ -0.23
SCFD1-211ENST00000554437 ZNF579Q8NAF0 562 aaKnown RBP13.64□□□□□ -0.23
SCFD1-211ENST00000554437 POTEB2H3BUK9 544 aa13.63□□□□□ -0.23
SCFD1-211ENST00000554437 ZRANB1Q9UGI0 708 aa13.62□□□□□ -0.23
SCFD1-211ENST00000554437 POTEMA6NI47 508 aa13.6□□□□□ -0.23
SCFD1-211ENST00000554437 DCAF8L2P0C7V8 631 aa13.59□□□□□ -0.23
SCFD1-211ENST00000554437 GALR2O43603 387 aaPredicted RBP13.58□□□□□ -0.24
SCFD1-211ENST00000554437 PYGBP11216 843 aa13.56□□□□□ -0.24
SCFD1-211ENST00000554437 RGL2O15211 777 aa13.55□□□□□ -0.24
SCFD1-211ENST00000554437 CHRM1P11229 460 aaPredicted RBP13.53□□□□□ -0.24
SCFD1-211ENST00000554437 POTEGQ6S5H5 508 aa13.53□□□□□ -0.24
SCFD1-211ENST00000554437 CCDC61Q9Y6R9 512 aa13.53□□□□□ -0.24
SCFD1-211ENST00000554437 RNF25Q96BH1 459 aaPredicted RBP13.45□□□□□ -0.26
SCFD1-211ENST00000554437 RIOK3O14730 519 aaKnown RBP13.43□□□□□ -0.26
SCFD1-211ENST00000554437 PELP1Q8IZL8 1130 aaKnown RBP13.43□□□□□ -0.26
SCFD1-211ENST00000554437 PHF12Q96QT6 1004 aa13.43□□□□□ -0.26
SCFD1-211ENST00000554437 KIF12Q96FN5 646 aa13.41□□□□□ -0.26
SCFD1-211ENST00000554437 MAP3K13O43283 966 aa13.39□□□□□ -0.27
SCFD1-211ENST00000554437 ZNF467Q7Z7K2 595 aaPredicted RBP13.38□□□□□ -0.27
SCFD1-211ENST00000554437 TAOK2Q9UL54 1235 aa13.38□□□□□ -0.27
SCFD1-211ENST00000554437 PCDHB13Q9Y5F0 798 aa13.38□□□□□ -0.27
SCFD1-211ENST00000554437 PCDHB8Q9UN66 801 aa13.36□□□□□ -0.27
SCFD1-211ENST00000554437 VGFO15240 615 aaPredicted RBP13.35□□□□□ -0.27
SCFD1-211ENST00000554437 SGIP1Q9BQI5 828 aa13.34□□□□□ -0.27
SCFD1-211ENST00000554437 PCDH10Q9P2E7 1040 aa13.34□□□□□ -0.27
SCFD1-211ENST00000554437 CHGAP10645 457 aaKnown RBP13.33□□□□□ -0.28
SCFD1-211ENST00000554437 POTEJP0CG39 1038 aa13.32□□□□□ -0.28
SCFD1-211ENST00000554437 IFNL1Q8IU54 200 aa13.32□□□□□ -0.28
SCFD1-211ENST00000554437 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.27□□□□□ -0.29
SCFD1-211ENST00000554437 PDAP1Q13442 181 aaKnown RBP13.27□□□□□ -0.29
SCFD1-211ENST00000554437 ZFP91Q96JP5 570 aaPredicted RBP13.27□□□□□ -0.29
SCFD1-211ENST00000554437 STK25O00506 426 aa13.26□□□□□ -0.29
SCFD1-211ENST00000554437 MS4A3Q96HJ5 214 aa13.26□□□□□ -0.29
SCFD1-211ENST00000554437 LCE2DQ5TA82 110 aaPredicted RBP13.25□□□□□ -0.29
SCFD1-211ENST00000554437 HS6ST3Q8IZP7 471 aa13.25□□□□□ -0.29
SCFD1-211ENST00000554437 METRNQ9UJH8 293 aa13.25□□□□□ -0.29
SCFD1-211ENST00000554437 PSEN1P49768 467 aa13.24□□□□□ -0.29
SCFD1-211ENST00000554437 BCL11BQ9C0K0 894 aaPredicted RBP13.22□□□□□ -0.29
SCFD1-211ENST00000554437 STK24Q9Y6E0 443 aa13.22□□□□□ -0.29
SCFD1-211ENST00000554437 ASTLQ6HA08 431 aaPredicted RBP13.21□□□□□ -0.29
SCFD1-211ENST00000554437 BBXQ8WY36 941 aaPredicted RBP13.21□□□□□ -0.29
SCFD1-211ENST00000554437 FAM163AQ96GL9 167 aaPredicted RBP13.2□□□□□ -0.3
SCFD1-211ENST00000554437 ATMINO43313 823 aaPredicted RBP13.19□□□□□ -0.3
SCFD1-211ENST00000554437 C7P10643 843 aa13.17□□□□□ -0.3
SCFD1-211ENST00000554437 SLC39A7Q92504 469 aa13.17□□□□□ -0.3
SCFD1-211ENST00000554437 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.17□□□□□ -0.3
SCFD1-211ENST00000554437 TRPC6Q9Y210 931 aa13.17□□□□□ -0.3
SCFD1-211ENST00000554437 MAMSTRQ6ZN01 415 aa13.14□□□□□ -0.31
SCFD1-211ENST00000554437 TMEM106CQ9BVX2 250 aa13.13□□□□□ -0.31
SCFD1-211ENST00000554437 TIE1P35590 1138 aa13.1□□□□□ -0.31
SCFD1-211ENST00000554437 DNAJC5Q9H3Z4 198 aa13.1□□□□□ -0.31
SCFD1-211ENST00000554437 CABP2Q9NPB3 220 aa13.09□□□□□ -0.31
SCFD1-211ENST00000554437 PAXIP1Q6ZW49 1069 aaPredicted RBP13.07□□□□□ -0.32
SCFD1-211ENST00000554437 PLCB2Q00722 1185 aa13.06□□□□□ -0.32
SCFD1-211ENST00000554437 NKX1-1Q15270 411 aaPredicted RBP13.06□□□□□ -0.32
SCFD1-211ENST00000554437 CFAP44Q96MT7 982 aa13.06□□□□□ -0.32
SCFD1-211ENST00000554437 BMP2KQ9NSY1 1161 aaPredicted RBP13.06□□□□□ -0.32
SCFD1-211ENST00000554437 TTLL13PA6NNM8 815 aa13.05□□□□□ -0.32
SCFD1-211ENST00000554437 ATN1P54259 1190 aaPredicted RBP13.05□□□□□ -0.32
SCFD1-211ENST00000554437 GOLGA2Q08379 1002 aa13.04□□□□□ -0.32
SCFD1-211ENST00000554437 SPRYD3Q8NCJ5 442 aa13.04□□□□□ -0.32
SCFD1-211ENST00000554437 SCUBE2Q9NQ36 999 aa13.04□□□□□ -0.32
SCFD1-211ENST00000554437 POTEFA5A3E0 1075 aa13.02□□□□□ -0.33
SCFD1-211ENST00000554437 EFCAB3Q8N7B9 438 aa13.02□□□□□ -0.33
SCFD1-211ENST00000554437 TRIM35Q9UPQ4 493 aa12.98□□□□□ -0.33
SCFD1-211ENST00000554437 MKRN3Q13064 507 aaKnown RBP12.97□□□□□ -0.33
SCFD1-211ENST00000554437 SOX12O15370 315 aa12.95□□□□□ -0.34
SCFD1-211ENST00000554437 GTPBP6O43824 516 aaPredicted RBP12.95□□□□□ -0.34
SCFD1-211ENST00000554437 RYDENQ9NUL5 291 aaKnown RBP12.95□□□□□ -0.34
SCFD1-211ENST00000554437 SLC24A1O60721 1099 aa12.94□□□□□ -0.34
SCFD1-211ENST00000554437 CDAN1Q8IWY9 1227 aa12.94□□□□□ -0.34
SCFD1-211ENST00000554437 MFRPQ9BY79 579 aa12.93□□□□□ -0.34
SCFD1-211ENST00000554437 HAP1P54257 671 aaPredicted RBP12.91□□□□□ -0.34
SCFD1-211ENST00000554437 NLRP6P59044 892 aa12.91□□□□□ -0.34
SCFD1-211ENST00000554437 PHF8Q9UPP1 1060 aa12.91□□□□□ -0.34
SCFD1-211ENST00000554437 FBXO22Q8NEZ5 403 aa12.86□□□□□ -0.35
SCFD1-211ENST00000554437 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.86□□□□□ -0.357e-8■■■□□ 15.3
SCFD1-211ENST00000554437 COLQQ9Y215 455 aaPredicted RBP12.84□□□□□ -0.35
SCFD1-211ENST00000554437 IER5LQ5T953 404 aa12.83□□□□□ -0.36
SCFD1-211ENST00000554437 MS4A4AQ96JQ5 239 aa12.8□□□□□ -0.36
SCFD1-211ENST00000554437 TSHZ2Q9NRE2 1034 aa12.8□□□□□ -0.36
SCFD1-211ENST00000554437 PPP1R37O75864 691 aa12.78□□□□□ -0.36
SCFD1-211ENST00000554437 IRX5P78411 483 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-211ENST00000554437 ILDR1Q86SU0 546 aaPredicted RBP12.77□□□□□ -0.37
SCFD1-211ENST00000554437 OCEL1Q9H607 264 aa12.77□□□□□ -0.37
SCFD1-211ENST00000554437 SEC24BO95487 1268 aa12.76□□□□□ -0.37
SCFD1-211ENST00000554437 PLCG2P16885 1265 aa12.76□□□□□ -0.37
SCFD1-211ENST00000554437 ST18O60284 1047 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms