RNA–Protein interactions for RNA: ENST00000554214.5

ATXN3-225, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-225ENST00000554214 ZNF579Q8NAF0 562 aaKnown RBP14.18□□□□□ -0.14
ATXN3-225ENST00000554214 PHF12Q96QT6 1004 aa14.15□□□□□ -0.14
ATXN3-225ENST00000554214 CCDC61Q9Y6R9 512 aa14.15□□□□□ -0.14
ATXN3-225ENST00000554214 GSE1Q14687 1217 aa14.13□□□□□ -0.15
ATXN3-225ENST00000554214 GABBR2O75899 941 aa14.11□□□□□ -0.15
ATXN3-225ENST00000554214 CIZ1Q9ULV3 898 aaPredicted RBP14.11□□□□□ -0.15
ATXN3-225ENST00000554214 CLCN6P51797 869 aa14.08□□□□□ -0.16
ATXN3-225ENST00000554214 KIF12Q96FN5 646 aa14.05□□□□□ -0.16
ATXN3-225ENST00000554214 PYGBP11216 843 aa14.02□□□□□ -0.17
ATXN3-225ENST00000554214 MAP3K13O43283 966 aa14.01□□□□□ -0.17
ATXN3-225ENST00000554214 GALR2O43603 387 aaPredicted RBP13.98□□□□□ -0.17
ATXN3-225ENST00000554214 MS4A3Q96HJ5 214 aa13.96□□□□□ -0.17
ATXN3-225ENST00000554214 CHRM1P11229 460 aaPredicted RBP13.95□□□□□ -0.18
ATXN3-225ENST00000554214 PCDHB13Q9Y5F0 798 aa13.94□□□□□ -0.18
ATXN3-225ENST00000554214 SGIP1Q9BQI5 828 aa13.93□□□□□ -0.18
ATXN3-225ENST00000554214 TRIM41Q8WV44 630 aa13.91□□□□□ -0.18
ATXN3-225ENST00000554214 IFNL1Q8IU54 200 aa13.88□□□□□ -0.19
ATXN3-225ENST00000554214 DCBLD2Q96PD2 775 aa13.87□□□□□ -0.19
ATXN3-225ENST00000554214 PKD2Q13563 968 aa13.86□□□□□ -0.19
ATXN3-225ENST00000554214 PCDHB8Q9UN66 801 aa13.85□□□□□ -0.19
ATXN3-225ENST00000554214 ECM2O94769 699 aaPredicted RBP13.82□□□□□ -0.2
ATXN3-225ENST00000554214 TRPC6Q9Y210 931 aa13.82□□□□□ -0.2
ATXN3-225ENST00000554214 ZNF467Q7Z7K2 595 aaPredicted RBP13.81□□□□□ -0.2
ATXN3-225ENST00000554214 POTEIP0CG38 1075 aa13.8□□□□□ -0.2
ATXN3-225ENST00000554214 TIE1P35590 1138 aa13.75□□□□□ -0.21
ATXN3-225ENST00000554214 BMP2KQ9NSY1 1161 aaPredicted RBP13.74□□□□□ -0.21
ATXN3-225ENST00000554214 ATMINO43313 823 aaPredicted RBP13.73□□□□□ -0.21
ATXN3-225ENST00000554214 ASTLQ6HA08 431 aaPredicted RBP13.72□□□□□ -0.21
ATXN3-225ENST00000554214 RIOK3O14730 519 aaKnown RBP13.71□□□□□ -0.21
ATXN3-225ENST00000554214 RNF25Q96BH1 459 aaPredicted RBP13.71□□□□□ -0.21
ATXN3-225ENST00000554214 TMEM106CQ9BVX2 250 aa13.71□□□□□ -0.21
ATXN3-225ENST00000554214 TTLL13PA6NNM8 815 aa13.7□□□□□ -0.22
ATXN3-225ENST00000554214 PSEN1P49768 467 aa13.7□□□□□ -0.22
ATXN3-225ENST00000554214 ATN1P54259 1190 aaPredicted RBP13.69□□□□□ -0.22
ATXN3-225ENST00000554214 PDAP1Q13442 181 aaKnown RBP13.69□□□□□ -0.22
ATXN3-225ENST00000554214 PELP1Q8IZL8 1130 aaKnown RBP13.68□□□□□ -0.22
ATXN3-225ENST00000554214 RGL2O15211 777 aa13.67□□□□□ -0.22
ATXN3-225ENST00000554214 AMER1Q5JTC6 1135 aaPredicted RBP13.64□□□□□ -0.23
ATXN3-225ENST00000554214 VGFO15240 615 aaPredicted RBP13.62□□□□□ -0.23
ATXN3-225ENST00000554214 TRIM35Q9UPQ4 493 aa13.62□□□□□ -0.23
ATXN3-225ENST00000554214 RTN4Q9NQC3 1192 aaKnown RBP13.61□□□□□ -0.23
ATXN3-225ENST00000554214 TAOK2Q9UL54 1235 aa13.61□□□□□ -0.23
ATXN3-225ENST00000554214 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.57□□□□□ -0.24
ATXN3-225ENST00000554214 SLC39A7Q92504 469 aa13.57□□□□□ -0.24
ATXN3-225ENST00000554214 ZFP91Q96JP5 570 aaPredicted RBP13.57□□□□□ -0.24
ATXN3-225ENST00000554214 C7P10643 843 aa13.56□□□□□ -0.24
ATXN3-225ENST00000554214 GOLGA2Q08379 1002 aa13.54□□□□□ -0.24
ATXN3-225ENST00000554214 CABP2Q9NPB3 220 aa13.52□□□□□ -0.25
ATXN3-225ENST00000554214 METRNQ9UJH8 293 aa13.52□□□□□ -0.25
ATXN3-225ENST00000554214 IER5LQ5T953 404 aa13.5□□□□□ -0.25
ATXN3-225ENST00000554214 MKRN3Q13064 507 aaKnown RBP13.49□□□□□ -0.25
ATXN3-225ENST00000554214 STK25O00506 426 aa13.48□□□□□ -0.25
ATXN3-225ENST00000554214 BCL11BQ9C0K0 894 aaPredicted RBP13.48□□□□□ -0.25
ATXN3-225ENST00000554214 STK24Q9Y6E0 443 aa13.48□□□□□ -0.25
ATXN3-225ENST00000554214 SEC24BO95487 1268 aa13.47□□□□□ -0.25
ATXN3-225ENST00000554214 DCAF8L2P0C7V8 631 aa13.46□□□□□ -0.25
ATXN3-225ENST00000554214 EFCAB3Q8N7B9 438 aa13.44□□□□□ -0.26
ATXN3-225ENST00000554214 COLQQ9Y215 455 aaPredicted RBP13.44□□□□□ -0.26
ATXN3-225ENST00000554214 POTEFA5A3E0 1075 aa13.42□□□□□ -0.26
ATXN3-225ENST00000554214 CHGAP10645 457 aaKnown RBP13.42□□□□□ -0.26
ATXN3-225ENST00000554214 IRX5P78411 483 aaPredicted RBP13.41□□□□□ -0.26
ATXN3-225ENST00000554214 OCEL1Q9H607 264 aa13.41□□□□□ -0.26
ATXN3-225ENST00000554214 PLCG2P16885 1265 aa13.4□□□□□ -0.26
ATXN3-225ENST00000554214 LHX8Q68G74 356 aa13.4□□□□□ -0.26
ATXN3-225ENST00000554214 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.39□□□□□ -0.273e-6■■□□□ 13.5
ATXN3-225ENST00000554214 POTEB2H3BUK9 544 aa13.37□□□□□ -0.27
ATXN3-225ENST00000554214 HS6ST3Q8IZP7 471 aa13.36□□□□□ -0.27
ATXN3-225ENST00000554214 SOX12O15370 315 aa13.35□□□□□ -0.27
ATXN3-225ENST00000554214 ILDR1Q86SU0 546 aaPredicted RBP13.3□□□□□ -0.28
ATXN3-225ENST00000554214 PDCD7Q8N8D1 485 aaKnown RBP13.3□□□□□ -0.28
ATXN3-225ENST00000554214 PHF8Q9UPP1 1060 aa13.3□□□□□ -0.28
ATXN3-225ENST00000554214 POTEJP0CG39 1038 aa13.28□□□□□ -0.28
ATXN3-225ENST00000554214 NLRP6P59044 892 aa13.27□□□□□ -0.29
ATXN3-225ENST00000554214 DPY19L2Q6NUT2 758 aa13.27□□□□□ -0.29
ATXN3-225ENST00000554214 MFRPQ9BY79 579 aa13.25□□□□□ -0.29
ATXN3-225ENST00000554214 FBXO22Q8NEZ5 403 aa13.22□□□□□ -0.29
ATXN3-225ENST00000554214 L3MBTL3Q96JM7 780 aaPredicted RBP13.22□□□□□ -0.29
ATXN3-225ENST00000554214 DNAJC5Q9H3Z4 198 aa13.22□□□□□ -0.29
ATXN3-225ENST00000554214 MAMSTRQ6ZN01 415 aa13.21□□□□□ -0.29
ATXN3-225ENST00000554214 MS4A4AQ96JQ5 239 aa13.21□□□□□ -0.29
ATXN3-225ENST00000554214 NKX1-1Q15270 411 aaPredicted RBP13.2□□□□□ -0.3
ATXN3-225ENST00000554214 OTUD5Q96G74 571 aa13.19□□□□□ -0.3
ATXN3-225ENST00000554214 G3V3G9 751 aa13.16□□□□□ -0.3
ATXN3-225ENST00000554214 SCUBE2Q9NQ36 999 aa13.16□□□□□ -0.3
ATXN3-225ENST00000554214 BOLA1Q9Y3E2 137 aa13.15□□□□□ -0.3
ATXN3-225ENST00000554214 BBXQ8WY36 941 aaPredicted RBP13.13□□□□□ -0.31
ATXN3-225ENST00000554214 PPP1R37O75864 691 aa13.09□□□□□ -0.31
ATXN3-225ENST00000554214 RYDENQ9NUL5 291 aaKnown RBP13.09□□□□□ -0.31
ATXN3-225ENST00000554214 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.09□□□□□ -0.31
ATXN3-225ENST00000554214 C3orf67Q6ZVT6 689 aa13.08□□□□□ -0.32
ATXN3-225ENST00000554214 TMEM121BQ9BXQ6 578 aaPredicted RBP13.08□□□□□ -0.32
ATXN3-225ENST00000554214 GTPBP6O43824 516 aaPredicted RBP13.07□□□□□ -0.32
ATXN3-225ENST00000554214 MICALL2Q8IY33 904 aa13.07□□□□□ -0.32
ATXN3-225ENST00000554214 SLAIN1Q8ND83 568 aa13.04□□□□□ -0.32
ATXN3-225ENST00000554214 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.04□□□□□ -0.32
ATXN3-225ENST00000554214 SPRYD3Q8NCJ5 442 aa12.98□□□□□ -0.33
ATXN3-225ENST00000554214 PAXIP1Q6ZW49 1069 aaPredicted RBP12.94□□□□□ -0.34
ATXN3-225ENST00000554214 CFAP44Q96MT7 982 aa12.93□□□□□ -0.34
ATXN3-225ENST00000554214 TMEM92Q6UXU6 159 aa12.92□□□□□ -0.34
ATXN3-225ENST00000554214 TMC2Q8TDI7 906 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms