RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 ATMINO43313 823 aaPredicted RBP9.99□□□□□ -0.81
SRP54-204ENST00000553923 KIF12Q96FN5 646 aa9.96□□□□□ -0.82
SRP54-204ENST00000553923 MIER1Q8N108 512 aa9.94□□□□□ -0.82
SRP54-204ENST00000553923 POTEJP0CG39 1038 aa9.93□□□□□ -0.82
SRP54-204ENST00000553923 RASEFQ8IZ41 740 aa9.93□□□□□ -0.82
SRP54-204ENST00000553923 METRNQ9UJH8 293 aa9.92□□□□□ -0.82
SRP54-204ENST00000553923 C7P10643 843 aa9.91□□□□□ -0.82
SRP54-204ENST00000553923 SLC39A7Q92504 469 aa9.91□□□□□ -0.82
SRP54-204ENST00000553923 ATN1P54259 1190 aaPredicted RBP9.9□□□□□ -0.82
SRP54-204ENST00000553923 TRPC6Q9Y210 931 aa9.9□□□□□ -0.82
SRP54-204ENST00000553923 MAP3K13O43283 966 aa9.88□□□□□ -0.83
SRP54-204ENST00000553923 PLEKHG5O94827 1062 aa9.87□□□□□ -0.83
SRP54-204ENST00000553923 BMP2KQ9NSY1 1161 aaPredicted RBP9.87□□□□□ -0.83
SRP54-204ENST00000553923 POTEFA5A3E0 1075 aa9.85□□□□□ -0.83
SRP54-204ENST00000553923 NUBP1P53384 320 aa9.85□□□□□ -0.83
SRP54-204ENST00000553923 TIE1P35590 1138 aa9.83□□□□□ -0.84
SRP54-204ENST00000553923 PLCD3Q8N3E9 789 aa9.82□□□□□ -0.84
SRP54-204ENST00000553923 FKBP8Q14318 412 aa9.8□□□□□ -0.84
SRP54-204ENST00000553923 SGIP1Q9BQI5 828 aa9.79□□□□□ -0.84
SRP54-204ENST00000553923 TTLL13PA6NNM8 815 aa9.77□□□□□ -0.85
SRP54-204ENST00000553923 ZBTB47Q9UFB7 747 aaPredicted RBP9.77□□□□□ -0.85
SRP54-204ENST00000553923 MAMSTRQ6ZN01 415 aa9.76□□□□□ -0.85
SRP54-204ENST00000553923 POTEMA6NI47 508 aa9.74□□□□□ -0.85
SRP54-204ENST00000553923 COLQQ9Y215 455 aaPredicted RBP9.74□□□□□ -0.85
SRP54-204ENST00000553923 LCE2DQ5TA82 110 aaPredicted RBP9.73□□□□□ -0.85
SRP54-204ENST00000553923 POTEGQ6S5H5 508 aa9.72□□□□□ -0.85
SRP54-204ENST00000553923 PCDHB13Q9Y5F0 798 aa9.72□□□□□ -0.85
SRP54-204ENST00000553923 IFNL1Q8IU54 200 aa9.71□□□□□ -0.86
SRP54-204ENST00000553923 PLSCR2Q9NRY7 297 aa9.69□□□□□ -0.86
SRP54-204ENST00000553923 TRIM35Q9UPQ4 493 aa9.69□□□□□ -0.86
SRP54-204ENST00000553923 IER5LQ5T953 404 aa9.68□□□□□ -0.86
SRP54-204ENST00000553923 SCUBE2Q9NQ36 999 aa9.68□□□□□ -0.86
SRP54-204ENST00000553923 FAM212AQ96EL1 285 aa9.67□□□□□ -0.86
SRP54-204ENST00000553923 SEC24BO95487 1268 aa9.63□□□□□ -0.87
SRP54-204ENST00000553923 TMEM106CQ9BVX2 250 aa9.62□□□□□ -0.87
SRP54-204ENST00000553923 FAM163AQ96GL9 167 aaPredicted RBP9.61□□□□□ -0.87
SRP54-204ENST00000553923 FBXO3Q9UK99 471 aa9.61□□□□□ -0.87
SRP54-204ENST00000553923 PCDH10Q9P2E7 1040 aa9.6□□□□□ -0.87
SRP54-204ENST00000553923 PYGBP11216 843 aa9.59□□□□□ -0.87
SRP54-204ENST00000553923 IRX5P78411 483 aaPredicted RBP9.59□□□□□ -0.87
SRP54-204ENST00000553923 DCAF8Q5TAQ9 597 aa9.59□□□□□ -0.87
SRP54-204ENST00000553923 PCDHB8Q9UN66 801 aa9.54□□□□□ -0.88
SRP54-204ENST00000553923 VASPP50552 380 aaPredicted RBP9.53□□□□□ -0.88
SRP54-204ENST00000553923 PLCG2P16885 1265 aa9.51□□□□□ -0.89
SRP54-204ENST00000553923 OCEL1Q9H607 264 aa9.5□□□□□ -0.89
SRP54-204ENST00000553923 SLAIN1Q8ND83 568 aa9.49□□□□□ -0.89
SRP54-204ENST00000553923 CHRM1P11229 460 aaPredicted RBP9.48□□□□□ -0.89
SRP54-204ENST00000553923 GSE1Q14687 1217 aa9.47□□□□□ -0.89
SRP54-204ENST00000553923 KLHL34Q8N239 644 aa9.46□□□□□ -0.9
SRP54-204ENST00000553923 ST18O60284 1047 aa9.45□□□□□ -0.9
SRP54-204ENST00000553923 ZNF467Q7Z7K2 595 aaPredicted RBP9.43□□□□□ -0.9
SRP54-204ENST00000553923 PDCD7Q8N8D1 485 aaKnown RBP9.42□□□□□ -0.9
SRP54-204ENST00000553923 IFNLR1Q8IU57 520 aaPredicted RBP9.41□□□□□ -0.9
SRP54-204ENST00000553923 CDAN1Q8IWY9 1227 aa9.39□□□□□ -0.91
SRP54-204ENST00000553923 ILDR1Q86SU0 546 aaPredicted RBP9.38□□□□□ -0.91
SRP54-204ENST00000553923 PSEN1P49768 467 aa9.37□□□□□ -0.91
SRP54-204ENST00000553923 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.36□□□□□ -0.91
SRP54-204ENST00000553923 MKRN3Q13064 507 aaKnown RBP9.34□□□□□ -0.91
SRP54-204ENST00000553923 SPOCK2Q92563 424 aa9.34□□□□□ -0.91
SRP54-204ENST00000553923 TMEM121BQ9BXQ6 578 aaPredicted RBP9.32□□□□□ -0.92
SRP54-204ENST00000553923 PDAP1Q13442 181 aaKnown RBP9.31□□□□□ -0.92
SRP54-204ENST00000553923 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.31□□□□□ -0.922e-12■■■□□ 17.7
SRP54-204ENST00000553923 SNPHO15079 494 aa9.3□□□□□ -0.92
SRP54-204ENST00000553923 GOLGA2Q08379 1002 aa9.3□□□□□ -0.92
SRP54-204ENST00000553923 L3MBTL3Q96JM7 780 aaPredicted RBP9.3□□□□□ -0.92
SRP54-204ENST00000553923 DPY19L2Q6NUT2 758 aa9.28□□□□□ -0.92
SRP54-204ENST00000553923 CIZ1Q9ULV3 898 aaPredicted RBP9.27□□□□□ -0.93
SRP54-204ENST00000553923 C3orf67Q6ZVT6 689 aa9.26□□□□□ -0.93
SRP54-204ENST00000553923 CABP2Q9NPB3 220 aa9.25□□□□□ -0.93
SRP54-204ENST00000553923 MARVELD3Q96A59 401 aa9.24□□□□□ -0.93
SRP54-204ENST00000553923 POTEB3A0JP26 581 aa9.19□□□□□ -0.94
SRP54-204ENST00000553923 POTEBQ6S5H4 581 aa9.19□□□□□ -0.94
SRP54-204ENST00000553923 SPNS2Q8IVW8 549 aa9.19□□□□□ -0.94
SRP54-204ENST00000553923 BOLA1Q9Y3E2 137 aa9.19□□□□□ -0.94
SRP54-204ENST00000553923 MMRN1Q13201 1228 aa9.17□□□□□ -0.94
SRP54-204ENST00000553923 TRIM41Q8WV44 630 aa9.17□□□□□ -0.94
SRP54-204ENST00000553923 HOXB3P14651 431 aaPredicted RBP9.16□□□□□ -0.94
SRP54-204ENST00000553923 EFCAB3Q8N7B9 438 aa9.15□□□□□ -0.94
SRP54-204ENST00000553923 EMP3P54852 163 aa9.14□□□□□ -0.95
SRP54-204ENST00000553923 RNF25Q96BH1 459 aaPredicted RBP9.13□□□□□ -0.95
SRP54-204ENST00000553923 HS3ST6Q96QI5 342 aa9.13□□□□□ -0.95
SRP54-204ENST00000553923 KRTAP3-3Q9BYR6 98 aa9.13□□□□□ -0.95
SRP54-204ENST00000553923 KRTAP3-2Q9BYR7 98 aa9.13□□□□□ -0.95
SRP54-204ENST00000553923 FAM205CA6NFA0 338 aa9.1□□□□□ -0.95
SRP54-204ENST00000553923 G3V3G9 751 aa9.08□□□□□ -0.96
SRP54-204ENST00000553923 HOXB1P14653 301 aaPredicted RBP9.08□□□□□ -0.96
SRP54-204ENST00000553923 TMEM92Q6UXU6 159 aa9.08□□□□□ -0.96
SRP54-204ENST00000553923 MS4A4AQ96JQ5 239 aa9.07□□□□□ -0.96
SRP54-204ENST00000553923 RIOK3O14730 519 aaKnown RBP9.06□□□□□ -0.96
SRP54-204ENST00000553923 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.05□□□□□ -0.96
SRP54-204ENST00000553923 SOX12O15370 315 aa9.05□□□□□ -0.96
SRP54-204ENST00000553923 MICALL2Q8IY33 904 aa9.05□□□□□ -0.96
SRP54-204ENST00000553923 ZFP91Q96JP5 570 aaPredicted RBP9.05□□□□□ -0.96
SRP54-204ENST00000553923 VGFO15240 615 aaPredicted RBP9.03□□□□□ -0.96
SRP54-204ENST00000553923 DOK7Q18PE1 504 aa9.02□□□□□ -0.97
SRP54-204ENST00000553923 PHF8Q9UPP1 1060 aa9.01□□□□□ -0.97
SRP54-204ENST00000553923 ZNF710Q8N1W2 664 aa9□□□□□ -0.97
SRP54-204ENST00000553923 GPR153Q6NV75 609 aa8.96□□□□□ -0.98
SRP54-204ENST00000553923 FBXO22Q8NEZ5 403 aa8.96□□□□□ -0.98
SRP54-204ENST00000553923 ZSWIM6Q9HCJ5 1215 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms