RNA–Protein interactions for RNA: ENST00000553491.5

ATXN3-220, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 857 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-220ENST00000553491 PHF12Q96QT6 1004 aa11.19□□□□□ -0.62
ATXN3-220ENST00000553491 CLCN6P51797 869 aa11.15□□□□□ -0.62
ATXN3-220ENST00000553491 SPOCK2Q92563 424 aa11.14□□□□□ -0.63
ATXN3-220ENST00000553491 FAM212AQ96EL1 285 aa11.12□□□□□ -0.63
ATXN3-220ENST00000553491 KIF12Q96FN5 646 aa11.11□□□□□ -0.63
ATXN3-220ENST00000553491 GALR2O43603 387 aaPredicted RBP11.1□□□□□ -0.63
ATXN3-220ENST00000553491 DCAF8Q5TAQ9 597 aa11.09□□□□□ -0.63
ATXN3-220ENST00000553491 MS4A3Q96HJ5 214 aa11.06□□□□□ -0.64
ATXN3-220ENST00000553491 MAP3K13O43283 966 aa11.05□□□□□ -0.64
ATXN3-220ENST00000553491 POTEIP0CG38 1075 aa11.05□□□□□ -0.64
ATXN3-220ENST00000553491 GSE1Q14687 1217 aa11.04□□□□□ -0.64
ATXN3-220ENST00000553491 PYGBP11216 843 aa11□□□□□ -0.65
ATXN3-220ENST00000553491 SGIP1Q9BQI5 828 aa11□□□□□ -0.65
ATXN3-220ENST00000553491 CHRM1P11229 460 aaPredicted RBP10.99□□□□□ -0.65
ATXN3-220ENST00000553491 TRPC6Q9Y210 931 aa10.98□□□□□ -0.65
ATXN3-220ENST00000553491 CIZ1Q9ULV3 898 aaPredicted RBP10.97□□□□□ -0.65
ATXN3-220ENST00000553491 PCDHB13Q9Y5F0 798 aa10.97□□□□□ -0.65
ATXN3-220ENST00000553491 IFNL1Q8IU54 200 aa10.96□□□□□ -0.65
ATXN3-220ENST00000553491 DCBLD2Q96PD2 775 aa10.93□□□□□ -0.66
ATXN3-220ENST00000553491 ASTLQ6HA08 431 aaPredicted RBP10.92□□□□□ -0.66
ATXN3-220ENST00000553491 NISCHQ9Y2I1 1504 aa10.91□□□□□ -0.66
ATXN3-220ENST00000553491 PCDHB8Q9UN66 801 aa10.9□□□□□ -0.66
ATXN3-220ENST00000553491 ATMINO43313 823 aaPredicted RBP10.89□□□□□ -0.67
ATXN3-220ENST00000553491 PELP1Q8IZL8 1130 aaKnown RBP10.89□□□□□ -0.67
ATXN3-220ENST00000553491 BMP2KQ9NSY1 1161 aaPredicted RBP10.89□□□□□ -0.67
ATXN3-220ENST00000553491 TIE1P35590 1138 aa10.88□□□□□ -0.67
ATXN3-220ENST00000553491 PKD2Q13563 968 aa10.87□□□□□ -0.67
ATXN3-220ENST00000553491 TRIM41Q8WV44 630 aa10.87□□□□□ -0.67
ATXN3-220ENST00000553491 ATN1P54259 1190 aaPredicted RBP10.86□□□□□ -0.67
ATXN3-220ENST00000553491 TTLL13PA6NNM8 815 aa10.84□□□□□ -0.67
ATXN3-220ENST00000553491 ZNF467Q7Z7K2 595 aaPredicted RBP10.83□□□□□ -0.68
ATXN3-220ENST00000553491 LHX8Q68G74 356 aa10.82□□□□□ -0.68
ATXN3-220ENST00000553491 RNF25Q96BH1 459 aaPredicted RBP10.82□□□□□ -0.68
ATXN3-220ENST00000553491 TMEM106CQ9BVX2 250 aa10.78□□□□□ -0.68
ATXN3-220ENST00000553491 ECM2O94769 699 aaPredicted RBP10.75□□□□□ -0.69
ATXN3-220ENST00000553491 TRIM35Q9UPQ4 493 aa10.75□□□□□ -0.69
ATXN3-220ENST00000553491 PSEN1P49768 467 aa10.74□□□□□ -0.69
ATXN3-220ENST00000553491 RIOK3O14730 519 aaKnown RBP10.73□□□□□ -0.69
ATXN3-220ENST00000553491 PDAP1Q13442 181 aaKnown RBP10.73□□□□□ -0.69
ATXN3-220ENST00000553491 SLC39A7Q92504 469 aa10.73□□□□□ -0.69
ATXN3-220ENST00000553491 POTEFA5A3E0 1075 aa10.72□□□□□ -0.69
ATXN3-220ENST00000553491 C7P10643 843 aa10.72□□□□□ -0.69
ATXN3-220ENST00000553491 RTN4Q9NQC3 1192 aaKnown RBP10.72□□□□□ -0.69
ATXN3-220ENST00000553491 RGL2O15211 777 aa10.71□□□□□ -0.69
ATXN3-220ENST00000553491 METRNQ9UJH8 293 aa10.71□□□□□ -0.69
ATXN3-220ENST00000553491 POTEB2H3BUK9 544 aa10.7□□□□□ -0.7
ATXN3-220ENST00000553491 AMER1Q5JTC6 1135 aaPredicted RBP10.69□□□□□ -0.7
ATXN3-220ENST00000553491 IER5LQ5T953 404 aa10.67□□□□□ -0.7
ATXN3-220ENST00000553491 VGFO15240 615 aaPredicted RBP10.66□□□□□ -0.7
ATXN3-220ENST00000553491 COLQQ9Y215 455 aaPredicted RBP10.66□□□□□ -0.7
ATXN3-220ENST00000553491 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.65□□□□□ -0.7
ATXN3-220ENST00000553491 ZFP91Q96JP5 570 aaPredicted RBP10.65□□□□□ -0.7
ATXN3-220ENST00000553491 IRX5P78411 483 aaPredicted RBP10.64□□□□□ -0.71
ATXN3-220ENST00000553491 PLSCR2Q9NRY7 297 aa10.64□□□□□ -0.71
ATXN3-220ENST00000553491 POTEJP0CG39 1038 aa10.63□□□□□ -0.71
ATXN3-220ENST00000553491 ILDR1Q86SU0 546 aaPredicted RBP10.6□□□□□ -0.71
ATXN3-220ENST00000553491 CABP2Q9NPB3 220 aa10.6□□□□□ -0.71
ATXN3-220ENST00000553491 SEC24BO95487 1268 aa10.56□□□□□ -0.72
ATXN3-220ENST00000553491 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
ATXN3-220ENST00000553491 PDCD7Q8N8D1 485 aaKnown RBP10.56□□□□□ -0.72
ATXN3-220ENST00000553491 OCEL1Q9H607 264 aa10.56□□□□□ -0.72
ATXN3-220ENST00000553491 TAOK2Q9UL54 1235 aa10.56□□□□□ -0.72
ATXN3-220ENST00000553491 EFCAB3Q8N7B9 438 aa10.55□□□□□ -0.72
ATXN3-220ENST00000553491 GOLGA2Q08379 1002 aa10.54□□□□□ -0.72
ATXN3-220ENST00000553491 OTUD5Q96G74 571 aa10.54□□□□□ -0.72
ATXN3-220ENST00000553491 BCL11BQ9C0K0 894 aaPredicted RBP10.54□□□□□ -0.72
ATXN3-220ENST00000553491 PLCG2P16885 1265 aa10.52□□□□□ -0.73
ATXN3-220ENST00000553491 STK25O00506 426 aa10.51□□□□□ -0.73
ATXN3-220ENST00000553491 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.51□□□□□ -0.733e-6■■□□□ 13.5
ATXN3-220ENST00000553491 STK24Q9Y6E0 443 aa10.5□□□□□ -0.73
ATXN3-220ENST00000553491 SOX12O15370 315 aa10.48□□□□□ -0.73
ATXN3-220ENST00000553491 DPY19L2Q6NUT2 758 aa10.48□□□□□ -0.73
ATXN3-220ENST00000553491 HS6ST3Q8IZP7 471 aa10.47□□□□□ -0.73
ATXN3-220ENST00000553491 MS4A4AQ96JQ5 239 aa10.45□□□□□ -0.74
ATXN3-220ENST00000553491 PHF8Q9UPP1 1060 aa10.45□□□□□ -0.74
ATXN3-220ENST00000553491 FBXO22Q8NEZ5 403 aa10.44□□□□□ -0.74
ATXN3-220ENST00000553491 MFRPQ9BY79 579 aa10.44□□□□□ -0.74
ATXN3-220ENST00000553491 DNAJC5Q9H3Z4 198 aa10.43□□□□□ -0.74
ATXN3-220ENST00000553491 MAMSTRQ6ZN01 415 aa10.42□□□□□ -0.74
ATXN3-220ENST00000553491 CHGAP10645 457 aaKnown RBP10.41□□□□□ -0.74
ATXN3-220ENST00000553491 SCUBE2Q9NQ36 999 aa10.39□□□□□ -0.75
ATXN3-220ENST00000553491 L3MBTL3Q96JM7 780 aaPredicted RBP10.38□□□□□ -0.75
ATXN3-220ENST00000553491 NLRP6P59044 892 aa10.37□□□□□ -0.75
ATXN3-220ENST00000553491 NKX1-1Q15270 411 aaPredicted RBP10.37□□□□□ -0.75
ATXN3-220ENST00000553491 TMEM121BQ9BXQ6 578 aaPredicted RBP10.37□□□□□ -0.75
ATXN3-220ENST00000553491 BOLA1Q9Y3E2 137 aa10.35□□□□□ -0.75
ATXN3-220ENST00000553491 DCAF8L2P0C7V8 631 aa10.3□□□□□ -0.76
ATXN3-220ENST00000553491 MICALL2Q8IY33 904 aa10.3□□□□□ -0.76
ATXN3-220ENST00000553491 PPP1R37O75864 691 aa10.29□□□□□ -0.76
ATXN3-220ENST00000553491 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.29□□□□□ -0.76
ATXN3-220ENST00000553491 SLAIN1Q8ND83 568 aa10.28□□□□□ -0.76
ATXN3-220ENST00000553491 C3orf67Q6ZVT6 689 aa10.26□□□□□ -0.77
ATXN3-220ENST00000553491 TMEM92Q6UXU6 159 aa10.25□□□□□ -0.77
ATXN3-220ENST00000553491 G3V3G9 751 aa10.23□□□□□ -0.77
ATXN3-220ENST00000553491 GTPBP6O43824 516 aaPredicted RBP10.23□□□□□ -0.77
ATXN3-220ENST00000553491 POTEMA6NI47 508 aa10.22□□□□□ -0.77
ATXN3-220ENST00000553491 LCE2DQ5TA82 110 aaPredicted RBP10.21□□□□□ -0.77
ATXN3-220ENST00000553491 SLC24A1O60721 1099 aa10.2□□□□□ -0.78
ATXN3-220ENST00000553491 BBXQ8WY36 941 aaPredicted RBP10.18□□□□□ -0.78
ATXN3-220ENST00000553491 POTEGQ6S5H5 508 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms