RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, humanhuman

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-208ENST00000552440 CCDC61Q9Y6R9 512 aa9.67□□□□□ -0.86
USP44-208ENST00000552440 MS4A3Q96HJ5 214 aa9.63□□□□□ -0.87
USP44-208ENST00000552440 KIF12Q96FN5 646 aa9.62□□□□□ -0.87
USP44-208ENST00000552440 SGIP1Q9BQI5 828 aa9.62□□□□□ -0.87
USP44-208ENST00000552440 FAM212AQ96EL1 285 aa9.61□□□□□ -0.87
USP44-208ENST00000552440 ASTLQ6HA08 431 aaPredicted RBP9.61□□□□□ -0.87
USP44-208ENST00000552440 RASEFQ8IZ41 740 aa9.61□□□□□ -0.87
USP44-208ENST00000552440 C7P10643 843 aa9.6□□□□□ -0.87
USP44-208ENST00000552440 SLC39A7Q92504 469 aa9.6□□□□□ -0.87
USP44-208ENST00000552440 ATMINO43313 823 aaPredicted RBP9.57□□□□□ -0.88
USP44-208ENST00000552440 NUBP1P53384 320 aa9.56□□□□□ -0.88
USP44-208ENST00000552440 TIE1P35590 1138 aa9.55□□□□□ -0.88
USP44-208ENST00000552440 MAP3K13O43283 966 aa9.54□□□□□ -0.88
USP44-208ENST00000552440 MAMSTRQ6ZN01 415 aa9.52□□□□□ -0.89
USP44-208ENST00000552440 METRNQ9UJH8 293 aa9.52□□□□□ -0.89
USP44-208ENST00000552440 KLHL34Q8N239 644 aa9.5□□□□□ -0.89
USP44-208ENST00000552440 PCDHB13Q9Y5F0 798 aa9.5□□□□□ -0.89
USP44-208ENST00000552440 VASPP50552 380 aaPredicted RBP9.49□□□□□ -0.89
USP44-208ENST00000552440 DCAF8Q5TAQ9 597 aa9.49□□□□□ -0.89
USP44-208ENST00000552440 PELP1Q8IZL8 1130 aaKnown RBP9.49□□□□□ -0.89
USP44-208ENST00000552440 GSE1Q14687 1217 aa9.47□□□□□ -0.89
USP44-208ENST00000552440 ATN1P54259 1190 aaPredicted RBP9.47□□□□□ -0.89
USP44-208ENST00000552440 BMP2KQ9NSY1 1161 aaPredicted RBP9.47□□□□□ -0.89
USP44-208ENST00000552440 IER5LQ5T953 404 aa9.45□□□□□ -0.9
USP44-208ENST00000552440 TTLL13PA6NNM8 815 aa9.42□□□□□ -0.9
USP44-208ENST00000552440 SEC24BO95487 1268 aa9.42□□□□□ -0.9
USP44-208ENST00000552440 OTUD5Q96G74 571 aa9.42□□□□□ -0.9
USP44-208ENST00000552440 SCUBE2Q9NQ36 999 aa9.41□□□□□ -0.9
USP44-208ENST00000552440 IFNL1Q8IU54 200 aa9.4□□□□□ -0.91
USP44-208ENST00000552440 POTEB2H3BUK9 544 aa9.39□□□□□ -0.91
USP44-208ENST00000552440 TRPC6Q9Y210 931 aa9.38□□□□□ -0.91
USP44-208ENST00000552440 ZNF467Q7Z7K2 595 aaPredicted RBP9.37□□□□□ -0.91
USP44-208ENST00000552440 TMEM106CQ9BVX2 250 aa9.37□□□□□ -0.91
USP44-208ENST00000552440 TRIM35Q9UPQ4 493 aa9.37□□□□□ -0.91
USP44-208ENST00000552440 SLC24A1O60721 1099 aa9.36□□□□□ -0.91
USP44-208ENST00000552440 CHRM1P11229 460 aaPredicted RBP9.36□□□□□ -0.91
USP44-208ENST00000552440 SPOCK2Q92563 424 aa9.35□□□□□ -0.91
USP44-208ENST00000552440 PYGBP11216 843 aa9.35□□□□□ -0.91
USP44-208ENST00000552440 PLCG2P16885 1265 aa9.31□□□□□ -0.92
USP44-208ENST00000552440 TRIM41Q8WV44 630 aa9.28□□□□□ -0.92
USP44-208ENST00000552440 GOLGA2Q08379 1002 aa9.28□□□□□ -0.92
USP44-208ENST00000552440 POTEFA5A3E0 1075 aa9.26□□□□□ -0.93
USP44-208ENST00000552440 POTEJP0CG39 1038 aa9.26□□□□□ -0.93
USP44-208ENST00000552440 IFNLR1Q8IU57 520 aaPredicted RBP9.26□□□□□ -0.93
USP44-208ENST00000552440 OCEL1Q9H607 264 aa9.26□□□□□ -0.93
USP44-208ENST00000552440 PCDHB8Q9UN66 801 aa9.26□□□□□ -0.93
USP44-208ENST00000552440 COLQQ9Y215 455 aaPredicted RBP9.26□□□□□ -0.93
USP44-208ENST00000552440 CIZ1Q9ULV3 898 aaPredicted RBP9.25□□□□□ -0.93
USP44-208ENST00000552440 IRX5P78411 483 aaPredicted RBP9.22□□□□□ -0.93
USP44-208ENST00000552440 MKRN3Q13064 507 aaKnown RBP9.22□□□□□ -0.93
USP44-208ENST00000552440 PCDH10Q9P2E7 1040 aa9.22□□□□□ -0.93
USP44-208ENST00000552440 PDAP1Q13442 181 aaKnown RBP9.21□□□□□ -0.93
USP44-208ENST00000552440 PSEN1P49768 467 aa9.2□□□□□ -0.94
USP44-208ENST00000552440 L3MBTL3Q96JM7 780 aaPredicted RBP9.18□□□□□ -0.94
USP44-208ENST00000552440 POTEMA6NI47 508 aa9.17□□□□□ -0.94
USP44-208ENST00000552440 POTEGQ6S5H5 508 aa9.16□□□□□ -0.94
USP44-208ENST00000552440 FAM163AQ96GL9 167 aaPredicted RBP9.16□□□□□ -0.94
USP44-208ENST00000552440 SLAIN1Q8ND83 568 aa9.15□□□□□ -0.94
USP44-208ENST00000552440 SNPHO15079 494 aa9.15□□□□□ -0.95
USP44-208ENST00000552440 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.15□□□□□ -0.95
USP44-208ENST00000552440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.12□□□□□ -0.95
USP44-208ENST00000552440 TAOK2Q9UL54 1235 aa9.1□□□□□ -0.95
USP44-208ENST00000552440 G3V3G9 751 aa9.1□□□□□ -0.95
USP44-208ENST00000552440 C3orf67Q6ZVT6 689 aa9.1□□□□□ -0.95
USP44-208ENST00000552440 PDCD7Q8N8D1 485 aaKnown RBP9.07□□□□□ -0.96
USP44-208ENST00000552440 CABP2Q9NPB3 220 aa9.06□□□□□ -0.96
USP44-208ENST00000552440 ILDR1Q86SU0 546 aaPredicted RBP9.05□□□□□ -0.96
USP44-208ENST00000552440 TMEM121BQ9BXQ6 578 aaPredicted RBP9.05□□□□□ -0.96
USP44-208ENST00000552440 PLSCR2Q9NRY7 297 aa9.05□□□□□ -0.96
USP44-208ENST00000552440 RIOK3O14730 519 aaKnown RBP9.03□□□□□ -0.96
USP44-208ENST00000552440 RTN4Q9NQC3 1192 aaKnown RBP9.03□□□□□ -0.96
USP44-208ENST00000552440 VGFO15240 615 aaPredicted RBP9.01□□□□□ -0.97
USP44-208ENST00000552440 AMER1Q5JTC6 1135 aaPredicted RBP9.01□□□□□ -0.97
USP44-208ENST00000552440 LCE2DQ5TA82 110 aaPredicted RBP9.01□□□□□ -0.97
USP44-208ENST00000552440 SOX12O15370 315 aa8.99□□□□□ -0.97
USP44-208ENST00000552440 BOLA1Q9Y3E2 137 aa8.98□□□□□ -0.97
USP44-208ENST00000552440 ST18O60284 1047 aa8.98□□□□□ -0.97
USP44-208ENST00000552440 EFCAB3Q8N7B9 438 aa8.94□□□□□ -0.98
USP44-208ENST00000552440 CDAN1Q8IWY9 1227 aa8.91□□□□□ -0.98
USP44-208ENST00000552440 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.91□□□□□ -0.98
USP44-208ENST00000552440 ZFP91Q96JP5 570 aaPredicted RBP8.91□□□□□ -0.98
USP44-208ENST00000552440 DPY19L2Q6NUT2 758 aa8.9□□□□□ -0.98
USP44-208ENST00000552440 RNF25Q96BH1 459 aaPredicted RBP8.88□□□□□ -0.99
USP44-208ENST00000552440 ECM2O94769 699 aaPredicted RBP8.87□□□□□ -0.99
USP44-208ENST00000552440 NLRP6P59044 892 aa8.87□□□□□ -0.99
USP44-208ENST00000552440 DOK7Q18PE1 504 aa8.87□□□□□ -0.99
USP44-208ENST00000552440 RIMBP2O15034 1052 aa8.87□□□□□ -0.99
USP44-208ENST00000552440 ZNF710Q8N1W2 664 aa8.84□□□□□ -0.99
USP44-208ENST00000552440 EMP3P54852 163 aa8.84□□□□□ -0.99
USP44-208ENST00000552440 BCL11BQ9C0K0 894 aaPredicted RBP8.83□□□□□ -1
USP44-208ENST00000552440 MICALL2Q8IY33 904 aa8.82□□□□□ -1
USP44-208ENST00000552440 STK24Q9Y6E0 443 aa8.82□□□□□ -1
USP44-208ENST00000552440 STK25O00506 426 aa8.81□□□□□ -1
USP44-208ENST00000552440 ZSWIM6Q9HCJ5 1215 aa8.8□□□□□ -1
USP44-208ENST00000552440 PHF8Q9UPP1 1060 aa8.8□□□□□ -1
USP44-208ENST00000552440 MARVELD3Q96A59 401 aa8.8□□□□□ -1
USP44-208ENST00000552440 HOXB1P14653 301 aaPredicted RBP8.77□□□□□ -1
USP44-208ENST00000552440 HOXB3P14651 431 aaPredicted RBP8.76□□□□□ -1.01
USP44-208ENST00000552440 PKD2Q13563 968 aa8.76□□□□□ -1.01
USP44-208ENST00000552440 MS4A4AQ96JQ5 239 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 189.3 ms