RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 ATMINO43313 823 aaPredicted RBP14.56□□□□□ -0.08
VPS29-210ENST00000552130 TSPYL2Q9H2G4 693 aaPredicted RBP14.55□□□□□ -0.08
VPS29-210ENST00000552130 KIF12Q96FN5 646 aa14.52□□□□□ -0.09
VPS29-210ENST00000552130 METRNQ9UJH8 293 aa14.48□□□□□ -0.09
VPS29-210ENST00000552130 C7P10643 843 aa14.47□□□□□ -0.09
VPS29-210ENST00000552130 MIER1Q8N108 512 aa14.47□□□□□ -0.09
VPS29-210ENST00000552130 SLC39A7Q92504 469 aa14.47□□□□□ -0.09
VPS29-210ENST00000552130 RASEFQ8IZ41 740 aa14.46□□□□□ -0.09
VPS29-210ENST00000552130 POTEJP0CG39 1038 aa14.44□□□□□ -0.1
VPS29-210ENST00000552130 PLEKHG5O94827 1062 aa14.43□□□□□ -0.1
VPS29-210ENST00000552130 ATN1P54259 1190 aaPredicted RBP14.42□□□□□ -0.1
VPS29-210ENST00000552130 MAP3K13O43283 966 aa14.39□□□□□ -0.11
VPS29-210ENST00000552130 TRPC6Q9Y210 931 aa14.39□□□□□ -0.11
VPS29-210ENST00000552130 BMP2KQ9NSY1 1161 aaPredicted RBP14.38□□□□□ -0.11
VPS29-210ENST00000552130 TIE1P35590 1138 aa14.34□□□□□ -0.11
VPS29-210ENST00000552130 POTEFA5A3E0 1075 aa14.33□□□□□ -0.12
VPS29-210ENST00000552130 NUBP1P53384 320 aa14.32□□□□□ -0.12
VPS29-210ENST00000552130 PLCD3Q8N3E9 789 aa14.32□□□□□ -0.12
VPS29-210ENST00000552130 SGIP1Q9BQI5 828 aa14.29□□□□□ -0.12
VPS29-210ENST00000552130 MAMSTRQ6ZN01 415 aa14.27□□□□□ -0.13
VPS29-210ENST00000552130 ZBTB47Q9UFB7 747 aaPredicted RBP14.27□□□□□ -0.13
VPS29-210ENST00000552130 FKBP8Q14318 412 aa14.26□□□□□ -0.13
VPS29-210ENST00000552130 TTLL13PA6NNM8 815 aa14.25□□□□□ -0.13
VPS29-210ENST00000552130 POTEMA6NI47 508 aa14.22□□□□□ -0.13
VPS29-210ENST00000552130 PCDHB13Q9Y5F0 798 aa14.19□□□□□ -0.14
VPS29-210ENST00000552130 POTEGQ6S5H5 508 aa14.18□□□□□ -0.14
VPS29-210ENST00000552130 COLQQ9Y215 455 aaPredicted RBP14.17□□□□□ -0.14
VPS29-210ENST00000552130 LCE2DQ5TA82 110 aaPredicted RBP14.16□□□□□ -0.14
VPS29-210ENST00000552130 SCUBE2Q9NQ36 999 aa14.16□□□□□ -0.14
VPS29-210ENST00000552130 IFNL1Q8IU54 200 aa14.15□□□□□ -0.14
VPS29-210ENST00000552130 IER5LQ5T953 404 aa14.14□□□□□ -0.15
VPS29-210ENST00000552130 FAM212AQ96EL1 285 aa14.13□□□□□ -0.15
VPS29-210ENST00000552130 TRIM35Q9UPQ4 493 aa14.13□□□□□ -0.15
VPS29-210ENST00000552130 SEC24BO95487 1268 aa14.06□□□□□ -0.16
VPS29-210ENST00000552130 PCDH10Q9P2E7 1040 aa14.05□□□□□ -0.16
VPS29-210ENST00000552130 SLC24A1O60721 1099 aa14.04□□□□□ -0.16
VPS29-210ENST00000552130 FBXO3Q9UK99 471 aa14.03□□□□□ -0.16
VPS29-210ENST00000552130 TMEM106CQ9BVX2 250 aa14.02□□□□□ -0.17
VPS29-210ENST00000552130 FAM163AQ96GL9 167 aaPredicted RBP13.99□□□□□ -0.17
VPS29-210ENST00000552130 IRX5P78411 483 aaPredicted RBP13.97□□□□□ -0.17
VPS29-210ENST00000552130 DCAF8Q5TAQ9 597 aa13.96□□□□□ -0.17
VPS29-210ENST00000552130 PYGBP11216 843 aa13.95□□□□□ -0.18
VPS29-210ENST00000552130 PLCG2P16885 1265 aa13.89□□□□□ -0.19
VPS29-210ENST00000552130 VASPP50552 380 aaPredicted RBP13.89□□□□□ -0.19
VPS29-210ENST00000552130 PCDHB8Q9UN66 801 aa13.89□□□□□ -0.19
VPS29-210ENST00000552130 OCEL1Q9H607 264 aa13.85□□□□□ -0.19
VPS29-210ENST00000552130 SLAIN1Q8ND83 568 aa13.84□□□□□ -0.19
VPS29-210ENST00000552130 GSE1Q14687 1217 aa13.82□□□□□ -0.2
VPS29-210ENST00000552130 CHRM1P11229 460 aaPredicted RBP13.81□□□□□ -0.2
VPS29-210ENST00000552130 KLHL34Q8N239 644 aa13.78□□□□□ -0.2
VPS29-210ENST00000552130 ST18O60284 1047 aa13.77□□□□□ -0.21
VPS29-210ENST00000552130 ZNF467Q7Z7K2 595 aaPredicted RBP13.77□□□□□ -0.21
VPS29-210ENST00000552130 PDCD7Q8N8D1 485 aaKnown RBP13.74□□□□□ -0.21
VPS29-210ENST00000552130 CDAN1Q8IWY9 1227 aa13.7□□□□□ -0.22
VPS29-210ENST00000552130 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.67□□□□□ -0.22
VPS29-210ENST00000552130 ILDR1Q86SU0 546 aaPredicted RBP13.66□□□□□ -0.22
VPS29-210ENST00000552130 IFNLR1Q8IU57 520 aaPredicted RBP13.66□□□□□ -0.22
VPS29-210ENST00000552130 PSEN1P49768 467 aa13.65□□□□□ -0.22
VPS29-210ENST00000552130 TMEM121BQ9BXQ6 578 aaPredicted RBP13.63□□□□□ -0.23
VPS29-210ENST00000552130 MKRN3Q13064 507 aaKnown RBP13.62□□□□□ -0.23
VPS29-210ENST00000552130 SPOCK2Q92563 424 aa13.61□□□□□ -0.23
VPS29-210ENST00000552130 SNPHO15079 494 aa13.6□□□□□ -0.23
VPS29-210ENST00000552130 GOLGA2Q08379 1002 aa13.58□□□□□ -0.24
VPS29-210ENST00000552130 PDAP1Q13442 181 aaKnown RBP13.58□□□□□ -0.24
VPS29-210ENST00000552130 L3MBTL3Q96JM7 780 aaPredicted RBP13.58□□□□□ -0.24
VPS29-210ENST00000552130 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.57□□□□□ -0.24
VPS29-210ENST00000552130 C3orf67Q6ZVT6 689 aa13.53□□□□□ -0.24
VPS29-210ENST00000552130 CIZ1Q9ULV3 898 aaPredicted RBP13.5□□□□□ -0.25
VPS29-210ENST00000552130 DPY19L2Q6NUT2 758 aa13.49□□□□□ -0.25
VPS29-210ENST00000552130 MARVELD3Q96A59 401 aa13.47□□□□□ -0.25
VPS29-210ENST00000552130 CABP2Q9NPB3 220 aa13.47□□□□□ -0.25
VPS29-210ENST00000552130 SPNS2Q8IVW8 549 aa13.41□□□□□ -0.26
VPS29-210ENST00000552130 TRIM41Q8WV44 630 aa13.4□□□□□ -0.26
VPS29-210ENST00000552130 BOLA1Q9Y3E2 137 aa13.4□□□□□ -0.26
VPS29-210ENST00000552130 POTEB3A0JP26 581 aa13.37□□□□□ -0.27
VPS29-210ENST00000552130 MMRN1Q13201 1228 aa13.37□□□□□ -0.27
VPS29-210ENST00000552130 POTEBQ6S5H4 581 aa13.37□□□□□ -0.27
VPS29-210ENST00000552130 HOXB3P14651 431 aaPredicted RBP13.35□□□□□ -0.27
VPS29-210ENST00000552130 EMP3P54852 163 aa13.35□□□□□ -0.27
VPS29-210ENST00000552130 EFCAB3Q8N7B9 438 aa13.32□□□□□ -0.28
VPS29-210ENST00000552130 HS3ST6Q96QI5 342 aa13.32□□□□□ -0.28
VPS29-210ENST00000552130 KRTAP3-3Q9BYR6 98 aa13.3□□□□□ -0.28
VPS29-210ENST00000552130 KRTAP3-2Q9BYR7 98 aa13.3□□□□□ -0.28
VPS29-210ENST00000552130 FAM205CA6NFA0 338 aa13.27□□□□□ -0.29
VPS29-210ENST00000552130 G3V3G9 751 aa13.27□□□□□ -0.29
VPS29-210ENST00000552130 RNF25Q96BH1 459 aaPredicted RBP13.27□□□□□ -0.29
VPS29-210ENST00000552130 HOXB1P14653 301 aaPredicted RBP13.24□□□□□ -0.29
VPS29-210ENST00000552130 RIOK3O14730 519 aaKnown RBP13.22□□□□□ -0.29
VPS29-210ENST00000552130 SOX12O15370 315 aa13.21□□□□□ -0.29
VPS29-210ENST00000552130 MS4A4AQ96JQ5 239 aa13.2□□□□□ -0.3
VPS29-210ENST00000552130 TMEM92Q6UXU6 159 aa13.19□□□□□ -0.3
VPS29-210ENST00000552130 MICALL2Q8IY33 904 aa13.19□□□□□ -0.3
VPS29-210ENST00000552130 DOK7Q18PE1 504 aa13.18□□□□□ -0.3
VPS29-210ENST00000552130 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.17□□□□□ -0.3
VPS29-210ENST00000552130 ZFP91Q96JP5 570 aaPredicted RBP13.17□□□□□ -0.3
VPS29-210ENST00000552130 VGFO15240 615 aaPredicted RBP13.16□□□□□ -0.3
VPS29-210ENST00000552130 ZNF710Q8N1W2 664 aa13.14□□□□□ -0.31
VPS29-210ENST00000552130 PHF8Q9UPP1 1060 aa13.12□□□□□ -0.31
VPS29-210ENST00000552130 ZSWIM6Q9HCJ5 1215 aa13.09□□□□□ -0.31
VPS29-210ENST00000552130 RIMBP2O15034 1052 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms