RNA–Protein interactions for RNA: ENST00000550335.5

HCFC2-204, Transcript of host cell factor C2, humanhuman

TSL 5

Gene HCFC2, Length 1,223 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-204ENST00000550335 SPDYE1Q8NFV5 336 aaPredicted RBP12.42□□□□□ -0.42
HCFC2-204ENST00000550335 NUBP1P53384 320 aa12.41□□□□□ -0.42
HCFC2-204ENST00000550335 PRR29P0C7W0 189 aa12.4□□□□□ -0.42
HCFC2-204ENST00000550335 RNF25Q96BH1 459 aaPredicted RBP12.4□□□□□ -0.42
HCFC2-204ENST00000550335 RIOK3O14730 519 aaKnown RBP12.36□□□□□ -0.43
HCFC2-204ENST00000550335 FAM212AQ96EL1 285 aa12.35□□□□□ -0.43
HCFC2-204ENST00000550335 STK25O00506 426 aa12.33□□□□□ -0.44
HCFC2-204ENST00000550335 NBR1Q14596 966 aa12.33□□□□□ -0.44
HCFC2-204ENST00000550335 AKT1S1Q96B36 256 aa12.33□□□□□ -0.44
HCFC2-204ENST00000550335 RBM42Q9BTD8 480 aaKnown RBP12.33□□□□□ -0.44
HCFC2-204ENST00000550335 CREBZFQ9NS37 354 aa12.32□□□□□ -0.44
HCFC2-204ENST00000550335 NKX1-1Q15270 411 aaPredicted RBP12.27□□□□□ -0.45
HCFC2-204ENST00000550335 REM2Q8IYK8 340 aaPredicted RBP12.26□□□□□ -0.45
HCFC2-204ENST00000550335 VGFO15240 615 aaPredicted RBP12.25□□□□□ -0.45
HCFC2-204ENST00000550335 RASEFQ8IZ41 740 aa12.24□□□□□ -0.45
HCFC2-204ENST00000550335 STK24Q9Y6E0 443 aa12.24□□□□□ -0.45
HCFC2-204ENST00000550335 PYGBP11216 843 aa12.23□□□□□ -0.45
HCFC2-204ENST00000550335 GTPBP6O43824 516 aaPredicted RBP12.22□□□□□ -0.45
HCFC2-204ENST00000550335 MNX1P50219 401 aaPredicted RBP12.22□□□□□ -0.45
HCFC2-204ENST00000550335 DNAJC5Q9H3Z4 198 aa12.22□□□□□ -0.45
HCFC2-204ENST00000550335 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.19□□□□□ -0.46
HCFC2-204ENST00000550335 ZFP91Q96JP5 570 aaPredicted RBP12.19□□□□□ -0.46
HCFC2-204ENST00000550335 BCL11BQ9C0K0 894 aaPredicted RBP12.19□□□□□ -0.46
HCFC2-204ENST00000550335 CHRM1P11229 460 aaPredicted RBP12.17□□□□□ -0.46
HCFC2-204ENST00000550335 PITPNM1O00562 1244 aa12.11□□□□□ -0.47
HCFC2-204ENST00000550335 TSPYL2Q9H2G4 693 aaPredicted RBP12.1□□□□□ -0.47
HCFC2-204ENST00000550335 RYDENQ9NUL5 291 aaKnown RBP12.08□□□□□ -0.48
HCFC2-204ENST00000550335 SGIP1Q9BQI5 828 aa12.07□□□□□ -0.48
HCFC2-204ENST00000550335 CHADLQ6NUI6 762 aa12.06□□□□□ -0.48
HCFC2-204ENST00000550335 WDR70Q9NW82 654 aa11.98□□□□□ -0.49
HCFC2-204ENST00000550335 ZNF467Q7Z7K2 595 aaPredicted RBP11.97□□□□□ -0.49
HCFC2-204ENST00000550335 PCDHB8Q9UN66 801 aa11.97□□□□□ -0.49
HCFC2-204ENST00000550335 PCDHB13Q9Y5F0 798 aa11.97□□□□□ -0.49
HCFC2-204ENST00000550335 PDAP1Q13442 181 aaKnown RBP11.93□□□□□ -0.5
HCFC2-204ENST00000550335 FARP1Q9Y4F1 1045 aaPredicted RBP11.93□□□□□ -0.5
HCFC2-204ENST00000550335 P3H3Q8IVL6 736 aa11.9□□□□□ -0.5
HCFC2-204ENST00000550335 PSEN1P49768 467 aa11.88□□□□□ -0.51
HCFC2-204ENST00000550335 CADPS2Q86UW7 1296 aa11.88□□□□□ -0.51
HCFC2-204ENST00000550335 PRKAR2AP13861 404 aaKnown RBP11.86□□□□□ -0.51
HCFC2-204ENST00000550335 PAK3O75914 559 aaPredicted RBP11.81□□□□□ -0.52
HCFC2-204ENST00000550335 KCNV2Q8TDN2 545 aa11.81□□□□□ -0.52
HCFC2-204ENST00000550335 CCDC61Q9Y6R9 512 aa11.81□□□□□ -0.52
HCFC2-204ENST00000550335 ZNF579Q8NAF0 562 aaKnown RBP11.8□□□□□ -0.52
HCFC2-204ENST00000550335 MFRPQ9BY79 579 aa11.8□□□□□ -0.52
HCFC2-204ENST00000550335 CABP2Q9NPB3 220 aa11.77□□□□□ -0.53
HCFC2-204ENST00000550335 PPP1R37O75864 691 aa11.75□□□□□ -0.53
HCFC2-204ENST00000550335 IFNL1Q8IU54 200 aa11.75□□□□□ -0.53
HCFC2-204ENST00000550335 EFCAB3Q8N7B9 438 aa11.75□□□□□ -0.53
HCFC2-204ENST00000550335 LMOD2Q6P5Q4 547 aa11.74□□□□□ -0.53
HCFC2-204ENST00000550335 MAP3K13O43283 966 aa11.73□□□□□ -0.53
HCFC2-204ENST00000550335 TULP1O00294 542 aaPredicted RBP11.72□□□□□ -0.53
HCFC2-204ENST00000550335 NLRP6P59044 892 aa11.72□□□□□ -0.53
HCFC2-204ENST00000550335 PHF8Q9UPP1 1060 aa11.72□□□□□ -0.53
HCFC2-204ENST00000550335 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.71□□□□□ -0.53
HCFC2-204ENST00000550335 GTF3C3Q9Y5Q9 886 aa11.71□□□□□ -0.53
HCFC2-204ENST00000550335 FXR2P51116 673 aaKnown RBP eCLIP11.68□□□□□ -0.54
HCFC2-204ENST00000550335 SOX12O15370 315 aa11.67□□□□□ -0.54
HCFC2-204ENST00000550335 KIF12Q96FN5 646 aa11.67□□□□□ -0.54
HCFC2-204ENST00000550335 E2F4Q16254 413 aa11.66□□□□□ -0.54
HCFC2-204ENST00000550335 FBXO22Q8NEZ5 403 aa11.65□□□□□ -0.54
HCFC2-204ENST00000550335 ZRANB1Q9UGI0 708 aa11.64□□□□□ -0.55
HCFC2-204ENST00000550335 ARHGEF1Q92888 912 aaKnown RBP11.63□□□□□ -0.55
HCFC2-204ENST00000550335 TIMELESSQ9UNS1 1208 aa11.63□□□□□ -0.55
HCFC2-204ENST00000550335 GOLGA2Q08379 1002 aa11.62□□□□□ -0.55
HCFC2-204ENST00000550335 TMEM132AQ24JP5 1023 aa11.61□□□□□ -0.55
HCFC2-204ENST00000550335 LARP6Q9BRS8 491 aaKnown RBP11.6□□□□□ -0.55
HCFC2-204ENST00000550335 SEMA3EO15041 775 aa11.59□□□□□ -0.55
HCFC2-204ENST00000550335 PIP4P2Q8N4L2 257 aa11.59□□□□□ -0.55
HCFC2-204ENST00000550335 PDE4AP27815 886 aa11.57□□□□□ -0.56
HCFC2-204ENST00000550335 CHRDL2Q6WN34 429 aa11.57□□□□□ -0.56
HCFC2-204ENST00000550335 PHF12Q96QT6 1004 aa11.57□□□□□ -0.56
HCFC2-204ENST00000550335 CD44P16070 742 aaKnown RBP11.56□□□□□ -0.56
HCFC2-204ENST00000550335 ZC3H15Q8WU90 426 aaKnown RBP11.55□□□□□ -0.56
HCFC2-204ENST00000550335 TMEM106CQ9BVX2 250 aa11.53□□□□□ -0.56
HCFC2-204ENST00000550335 NCKAP5LQ9HCH0 1330 aa11.53□□□□□ -0.56
HCFC2-204ENST00000550335 MS4A4AQ96JQ5 239 aa11.51□□□□□ -0.57
HCFC2-204ENST00000550335 TESPA1A2RU30 521 aaPredicted RBP11.5□□□□□ -0.57
HCFC2-204ENST00000550335 MKRN3Q13064 507 aaKnown RBP11.5□□□□□ -0.57
HCFC2-204ENST00000550335 SLC24A3Q9HC58 644 aa11.5□□□□□ -0.57
HCFC2-204ENST00000550335 SMYD5Q6GMV2 418 aa11.49□□□□□ -0.57
HCFC2-204ENST00000550335 DDX27Q96GQ7 796 aaKnown RBP11.49□□□□□ -0.57
HCFC2-204ENST00000550335 NEUROD2Q15784 382 aa11.48□□□□□ -0.57
HCFC2-204ENST00000550335 BRPF1P55201 1214 aaPredicted RBP11.47□□□□□ -0.57
HCFC2-204ENST00000550335 ERICH6Q7L0X2 663 aa11.44□□□□□ -0.58
HCFC2-204ENST00000550335 C14orf37Q86TY3 774 aa11.44□□□□□ -0.58
HCFC2-204ENST00000550335 TRPC6Q9Y210 931 aa11.44□□□□□ -0.58
HCFC2-204ENST00000550335 CRISPLD2Q9H0B8 497 aa11.43□□□□□ -0.58
HCFC2-204ENST00000550335 MFSD10Q14728 455 aa11.42□□□□□ -0.58
HCFC2-204ENST00000550335 MS4A3Q96HJ5 214 aa11.42□□□□□ -0.58
HCFC2-204ENST00000550335 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.38□□□□□ -0.59
HCFC2-204ENST00000550335 ZMYND10O75800 440 aa11.35□□□□□ -0.59
HCFC2-204ENST00000550335 RBM26Q5T8P6 1007 aaKnown RBP11.35□□□□□ -0.59
HCFC2-204ENST00000550335 KRI1Q8N9T8 703 aaKnown RBP11.35□□□□□ -0.59
HCFC2-204ENST00000550335 MLLT3P42568 568 aaPredicted RBP11.34□□□□□ -0.59
HCFC2-204ENST00000550335 PPP1R15BQ5SWA1 713 aa11.34□□□□□ -0.59
HCFC2-204ENST00000550335 CAMK2BQ13554 666 aa11.32□□□□□ -0.6
HCFC2-204ENST00000550335 ARIH1Q9Y4X5 557 aaPredicted RBP11.31□□□□□ -0.6
HCFC2-204ENST00000550335 TTLL13PA6NNM8 815 aa11.3□□□□□ -0.6
HCFC2-204ENST00000550335 GPIHBP1Q8IV16 184 aa11.3□□□□□ -0.6
HCFC2-204ENST00000550335 DPYSL4O14531 572 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms