RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 HS6ST3Q8IZP7 471 aa10.91□□□□□ -0.66
USP28-211ENST00000544272 DNAJC5Q9H3Z4 198 aa10.91□□□□□ -0.66
USP28-211ENST00000544272 BCANQ96GW7 911 aa10.9□□□□□ -0.66
USP28-211ENST00000544272 PRR29P0C7W0 189 aa10.89□□□□□ -0.67
USP28-211ENST00000544272 CLEC11AQ9Y240 323 aa10.88□□□□□ -0.67
USP28-211ENST00000544272 DCAF8Q5TAQ9 597 aa10.85□□□□□ -0.67
USP28-211ENST00000544272 TSHZ2Q9NRE2 1034 aa10.85□□□□□ -0.67
USP28-211ENST00000544272 RIOK3O14730 519 aaKnown RBP10.82□□□□□ -0.68
USP28-211ENST00000544272 CHRM1P11229 460 aaPredicted RBP10.82□□□□□ -0.68
USP28-211ENST00000544272 FAM212AQ96EL1 285 aa10.82□□□□□ -0.68
USP28-211ENST00000544272 RASEFQ8IZ41 740 aa10.8□□□□□ -0.68
USP28-211ENST00000544272 PITPNM1O00562 1244 aa10.79□□□□□ -0.68
USP28-211ENST00000544272 TAOK2Q9UL54 1235 aa10.79□□□□□ -0.68
USP28-211ENST00000544272 NKX1-1Q15270 411 aaPredicted RBP10.76□□□□□ -0.69
USP28-211ENST00000544272 VGFO15240 615 aaPredicted RBP10.75□□□□□ -0.69
USP28-211ENST00000544272 SGIP1Q9BQI5 828 aa10.75□□□□□ -0.69
USP28-211ENST00000544272 GTPBP6O43824 516 aaPredicted RBP10.71□□□□□ -0.69
USP28-211ENST00000544272 STK25O00506 426 aa10.69□□□□□ -0.7
USP28-211ENST00000544272 PYGBP11216 843 aa10.66□□□□□ -0.7
USP28-211ENST00000544272 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.65□□□□□ -0.7
USP28-211ENST00000544272 PRKCSHP14314 528 aaPredicted RBP10.65□□□□□ -0.7
USP28-211ENST00000544272 ZFP91Q96JP5 570 aaPredicted RBP10.65□□□□□ -0.7
USP28-211ENST00000544272 BCL11BQ9C0K0 894 aaPredicted RBP10.63□□□□□ -0.71
USP28-211ENST00000544272 CHADLQ6NUI6 762 aa10.6□□□□□ -0.71
USP28-211ENST00000544272 STK24Q9Y6E0 443 aa10.6□□□□□ -0.71
USP28-211ENST00000544272 FARP1Q9Y4F1 1045 aaPredicted RBP10.59□□□□□ -0.71
USP28-211ENST00000544272 RYDENQ9NUL5 291 aaKnown RBP10.57□□□□□ -0.72
USP28-211ENST00000544272 ZNF467Q7Z7K2 595 aaPredicted RBP10.55□□□□□ -0.72
USP28-211ENST00000544272 TPRNQ4KMQ1 711 aa10.54□□□□□ -0.72
USP28-211ENST00000544272 TSPYL2Q9H2G4 693 aaPredicted RBP10.54□□□□□ -0.72
USP28-211ENST00000544272 CCDC61Q9Y6R9 512 aa10.52□□□□□ -0.73
USP28-211ENST00000544272 FXR2P51116 673 aaKnown RBP eCLIP10.51□□□□□ -0.73
USP28-211ENST00000544272 PRKAR2AP13861 404 aaKnown RBP10.5□□□□□ -0.73
USP28-211ENST00000544272 PDAP1Q13442 181 aaKnown RBP10.5□□□□□ -0.73
USP28-211ENST00000544272 NBR1Q14596 966 aa10.49□□□□□ -0.73
USP28-211ENST00000544272 ZNF579Q8NAF0 562 aaKnown RBP10.46□□□□□ -0.73
USP28-211ENST00000544272 PCDHB8Q9UN66 801 aa10.46□□□□□ -0.73
USP28-211ENST00000544272 PCDHB13Q9Y5F0 798 aa10.46□□□□□ -0.73
USP28-211ENST00000544272 PSEN1P49768 467 aa10.42□□□□□ -0.74
USP28-211ENST00000544272 POTEHQ6S545 545 aa10.4□□□□□ -0.74
USP28-211ENST00000544272 MFRPQ9BY79 579 aa10.39□□□□□ -0.75
USP28-211ENST00000544272 CADPS2Q86UW7 1296 aa10.37□□□□□ -0.75
USP28-211ENST00000544272 IFNL1Q8IU54 200 aa10.37□□□□□ -0.75
USP28-211ENST00000544272 PIP4P2Q8N4L2 257 aa10.37□□□□□ -0.75
USP28-211ENST00000544272 KIF12Q96FN5 646 aa10.37□□□□□ -0.75
USP28-211ENST00000544272 PAK3O75914 559 aaPredicted RBP10.36□□□□□ -0.75
USP28-211ENST00000544272 CHRDL2Q6WN34 429 aa10.36□□□□□ -0.75
USP28-211ENST00000544272 MAP3K13O43283 966 aa10.35□□□□□ -0.75
USP28-211ENST00000544272 P3H3Q8IVL6 736 aa10.33□□□□□ -0.76
USP28-211ENST00000544272 FBXO22Q8NEZ5 403 aa10.32□□□□□ -0.76
USP28-211ENST00000544272 SOX12O15370 315 aa10.29□□□□□ -0.76
USP28-211ENST00000544272 EFCAB3Q8N7B9 438 aa10.28□□□□□ -0.76
USP28-211ENST00000544272 PPP1R37O75864 691 aa10.27□□□□□ -0.77
USP28-211ENST00000544272 NLRP6P59044 892 aa10.27□□□□□ -0.77
USP28-211ENST00000544272 KCNV2Q8TDN2 545 aa10.27□□□□□ -0.77
USP28-211ENST00000544272 CABP2Q9NPB3 220 aa10.26□□□□□ -0.77
USP28-211ENST00000544272 WDR70Q9NW82 654 aa10.26□□□□□ -0.77
USP28-211ENST00000544272 PHF8Q9UPP1 1060 aa10.25□□□□□ -0.77
USP28-211ENST00000544272 ZRANB1Q9UGI0 708 aa10.24□□□□□ -0.77
USP28-211ENST00000544272 CD44P16070 742 aaKnown RBP10.22□□□□□ -0.77
USP28-211ENST00000544272 PHF12Q96QT6 1004 aa10.21□□□□□ -0.77
USP28-211ENST00000544272 MS4A4AQ96JQ5 239 aa10.18□□□□□ -0.78
USP28-211ENST00000544272 ARHGEF1Q92888 912 aaKnown RBP10.16□□□□□ -0.78
USP28-211ENST00000544272 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP28-211ENST00000544272 E2F4Q16254 413 aa10.14□□□□□ -0.79
USP28-211ENST00000544272 NCKAP5LQ9HCH0 1330 aa10.13□□□□□ -0.79
USP28-211ENST00000544272 C19orf67A6NJJ6 358 aa10.13□□□□□ -0.79
USP28-211ENST00000544272 MS4A3Q96HJ5 214 aa10.12□□□□□ -0.79
USP28-211ENST00000544272 TMEM106CQ9BVX2 250 aa10.12□□□□□ -0.79
USP28-211ENST00000544272 TRPC6Q9Y210 931 aa10.12□□□□□ -0.79
USP28-211ENST00000544272 MFSD10Q14728 455 aa10.11□□□□□ -0.79
USP28-211ENST00000544272 LMOD2Q6P5Q4 547 aa10.11□□□□□ -0.79
USP28-211ENST00000544272 CRISPLD2Q9H0B8 497 aa10.1□□□□□ -0.79
USP28-211ENST00000544272 ILDR1Q86SU0 546 aaPredicted RBP10.09□□□□□ -0.79
USP28-211ENST00000544272 PDE4AP27815 886 aa10.08□□□□□ -0.8
USP28-211ENST00000544272 GOLGA2Q08379 1002 aa10.07□□□□□ -0.8
USP28-211ENST00000544272 ARIH1Q9Y4X5 557 aaPredicted RBP10.07□□□□□ -0.8
USP28-211ENST00000544272 TIE1P35590 1138 aa10.06□□□□□ -0.8
USP28-211ENST00000544272 LARP6Q9BRS8 491 aaKnown RBP10.06□□□□□ -0.8
USP28-211ENST00000544272 TESPA1A2RU30 521 aaPredicted RBP10.05□□□□□ -0.8
USP28-211ENST00000544272 MKRN3Q13064 507 aaKnown RBP10.05□□□□□ -0.8
USP28-211ENST00000544272 TTLL13PA6NNM8 815 aa10.03□□□□□ -0.8
USP28-211ENST00000544272 CAMK2BQ13554 666 aa10.03□□□□□ -0.8
USP28-211ENST00000544272 TULP1O00294 542 aaPredicted RBP10.02□□□□□ -0.81
USP28-211ENST00000544272 SEMA3EO15041 775 aa10.02□□□□□ -0.81
USP28-211ENST00000544272 DDX27Q96GQ7 796 aaKnown RBP10.01□□□□□ -0.81
USP28-211ENST00000544272 BMP2KQ9NSY1 1161 aaPredicted RBP10□□□□□ -0.81
USP28-211ENST00000544272 ZC3H15Q8WU90 426 aaKnown RBP9.98□□□□□ -0.81
USP28-211ENST00000544272 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.97□□□□□ -0.81
USP28-211ENST00000544272 GPHNQ9NQX3 736 aaPredicted RBP9.95□□□□□ -0.82
USP28-211ENST00000544272 GALR2O43603 387 aaPredicted RBP9.94□□□□□ -0.82
USP28-211ENST00000544272 TMEM132AQ24JP5 1023 aa9.94□□□□□ -0.82
USP28-211ENST00000544272 TRIM35Q9UPQ4 493 aa9.94□□□□□ -0.82
USP28-211ENST00000544272 CLCN6P51797 869 aa9.93□□□□□ -0.82
USP28-211ENST00000544272 PPP1R15BQ5SWA1 713 aa9.92□□□□□ -0.82
USP28-211ENST00000544272 SMYD5Q6GMV2 418 aa9.92□□□□□ -0.82
USP28-211ENST00000544272 DPY19L2Q6NUT2 758 aa9.9□□□□□ -0.82
USP28-211ENST00000544272 PDCD7Q8N8D1 485 aaKnown RBP9.9□□□□□ -0.82
USP28-211ENST00000544272 ZMYND10O75800 440 aa9.88□□□□□ -0.83
USP28-211ENST00000544272 BRPF1P55201 1214 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms